Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Reverse (-)

59173172 .. 59175980

Gene Structure 2809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG361300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAGAGAACAACAGCGGCACGGAGGTTCCGGCGAACCAGACGATCTACATCAACAACCTGAACGAGAAAATCAAGCTCGACGAATTGAAGAAGACGCTGCACGCCATGTTCTCGCAGTTCGGCAAGGTTCTGGATGTGCTGGCCTTCAAGACGCTCAAGCACAAAGGTCAAGCTTGGGTCGTCTTCGAGGACGTCTCTTCTGCCACCAATGCCATTCGCCAAATGCAGAGCTTCCCTTTCTATGACAAGCCCATGAAAATACAATATGCCAAGACGAAATCAGATATAATAGCAAAGGCTGATGGTACGTTTGTTCCACGTGAAAGACGAAAAAGGCATGAGGAGAAGGGGAAAAAACGGAAAGAGCAGCAGGATGCTATCCAAGCTGGAATGGGTCTCAATCCTGCTTATCCTGGTGCCTATGGTGGAGCACCTCCGGTAAGTATTCTCTTTTTGTTTTTGTTTTTTAAAGTATCATGTCTTCTGTTTAAGGAGAAAACACTTCTTTCAATTTATCTTTCTATAACTCTTAATGTTTTGATTTGGATATCTATCTGTTTAATGTTTGTGTATTCTTCTATTGGTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

198

Amino Acids

22.42

Weight (kDa)

9.56

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	16 - 86	2.3e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	419
AciI	CCGC	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	91, 151, 513
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	4 cut(s)	79, 176, 234, 389
AluI	AGCT	4 cut(s)	79, 176, 234, 389
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	202, 404
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	100, 370
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BanI	GGYRCC	1 cut(s)	419
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	4 cut(s)	101, 178, 476, 581
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	2 cut(s)	87, 382
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	202, 404
BisI	GCNGC	3 cut(s)	19, 101, 371
BlsI	GCNGC	3 cut(s)	20, 102, 372
Bme1390I	CCNGG	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	30, 421
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	4 cut(s)	101, 178, 476, 581
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	323
BsaBI	GATNNNNATC	2 cut(s)	50, 554
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	439
Bse8I	GATNNNNATC	2 cut(s)	50, 554
BseBI	CCWGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	142, 382
BseJI	GATNNNNATC	2 cut(s)	50, 554
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	87, 382
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	32, 440
BsmAI	GTCTC	2 cut(s)	202, 404
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	30, 421
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	404
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	105, 144
BstF5I	GGATG	2 cut(s)	142, 382
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	202, 404
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 386
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	87, 382
BstV2I	GAAGAC	4 cut(s)	101, 178, 476, 581
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	142, 382
Cac8I	GCNNGC	2 cut(s)	105, 144
CseI	GACGC	2 cut(s)	106, 163
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	4 cut(s)	109, 256, 341, 480
CviJI	RGCY	7 cut(s)	79, 146, 176, 234, 253, 302, 389
CviKI_1	RGCY	7 cut(s)	79, 146, 176, 234, 253, 302, 389
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	552
Eco72I	CACGTG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	4 cut(s)	112, 259, 344, 483
FaiI	YATR	9 cut(s)	110, 246, 257, 270, 290, 342, 426, 481, 527
FatI	CATG	4 cut(s)	108, 255, 340, 479
Fnu4HI	GCNGC	3 cut(s)	19, 101, 371
FokI	GGATG	2 cut(s)	149, 389
Fsp4HI	GCNGC	3 cut(s)	19, 101, 371
GluI	GCNGC	3 cut(s)	19, 101, 371
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	32, 440
HgaI	GACGC	2 cut(s)	106, 163
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	112, 259, 344, 483
HindIII	AAGCTT	1 cut(s)	174
HpaII	CCGG	2 cut(s)	32, 440
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	134, 151
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	157, 343
HpyCH4IV	ACGT	3 cut(s)	195, 311, 322
HpyCH4V	TGCA	2 cut(s)	103, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 386
HpySE526I	ACGT	3 cut(s)	195, 311, 322
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	112, 259, 344, 483
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	87, 382
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	3 cut(s)	195, 311, 322
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	7 cut(s)	103, 106, 178, 192, 476, 570, 581
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	2 cut(s)	86, 513
MnlI	CCTC	4 cut(s)	19, 184, 337, 447
MseI	TTAA	4 cut(s)	471, 492, 534, 563
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	2 cut(s)	32, 440
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	212, 386
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	4 cut(s)	112, 259, 344, 483
NlaIV	GGNNCC	2 cut(s)	30, 421
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PkrI	GCNGC	3 cut(s)	20, 102, 372
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	30, 421
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	471, 492, 534, 563
SatI	GCNGC	3 cut(s)	19, 101, 371
Sau3AI	GATC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	86, 513
SsiI	CCGC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	415
TaiI	ACGT	3 cut(s)	198, 314, 325
TaqI	TCGA	2 cut(s)	81, 189
TasI	AATT	2 cut(s)	86, 513
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	4 cut(s)	471, 492, 534, 563
Tru9I	TTAA	4 cut(s)	471, 492, 534, 563
TseI	GCWGC	2 cut(s)	100, 370
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	2 cut(s)	38, 376
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.