Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Forward (+)

38578433 .. 38578768

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0242200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTTACCACACTCGCTCTAACAGCTTCCCATCAAGGCCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGTTCATCCGAGTCCACATCCACATCTTCATCATCAATAAGCAACAAACTAAATGGCCTGCACGACTTACTTTATTGTGTTGATAGGTTGCTTCAGTTGCAAGGCACCCAATTTAGGCAAGCATTAGCACAAGAGCAACAACAGAAATGGGCCAGTGAGCTATTAGACGGCTCTCTCCGGCTCTTGGATATTTGTAGCACTGCAAAGGATGCCCTCTCGCAGAGCAAGGAGTGCATACAAGACCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

5.72

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	44 - 111	3.3e-21	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	198, 268
AgsI	TTSAA	2 cut(s)	56, 332
AluBI	AGCT	2 cut(s)	27, 244
AluI	AGCT	2 cut(s)	27, 244
AoxI	GGCC	3 cut(s)	38, 139, 234
AspS9I	GGNCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	188
BccI	CCATC	2 cut(s)	40, 56
BceAI	ACGGC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 268
Bse1I	ACTGG	1 cut(s)	237
BseGI	GGATG	3 cut(s)	89, 101, 298
BseLI	CCNNNNNNNGG	2 cut(s)	198, 268
BseNI	ACTGG	1 cut(s)	237
BsgI	GTGCAG	2 cut(s)	97, 128
BshFI	GGCC	3 cut(s)	40, 141, 236
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	198, 268
BsnI	GGCC	3 cut(s)	40, 141, 236
BspANI	GGCC	3 cut(s)	40, 141, 236
BspLI	GGNNCC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	237
BstAPI	GCANNNNNTGC	2 cut(s)	293, 315
BstC8I	GCNNGC	2 cut(s)	143, 204
BstF5I	GGATG	3 cut(s)	89, 101, 298
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 181, 293, 315
BsuRI	GGCC	3 cut(s)	40, 141, 236
BtsCI	GGATG	3 cut(s)	89, 101, 298
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	244, 282
Cac8I	GCNNGC	2 cut(s)	143, 204
Cfr13I	GGNCC	1 cut(s)	234
CviJI	RGCY	8 cut(s)	5, 27, 40, 141, 236, 244, 255, 265
CviKI_1	RGCY	8 cut(s)	5, 27, 40, 141, 236, 244, 255, 265
Eco57I	CTGAAG	1 cut(s)	161
FaiI	YATR	1 cut(s)	320
FokI	GGATG	3 cut(s)	76, 88, 305
HaeIII	GGCC	3 cut(s)	40, 141, 236
HapII	CCGG	1 cut(s)	262
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	78, 145, 184, 287, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 181, 293, 315
LpnPI	CCDG	3 cut(s)	155, 250, 275
LweI	GCATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	102
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	308
MspI	CCGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	4 cut(s)	24, 181, 293, 315
NlaIV	GGNNCC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	104
SetI	ASST	4 cut(s)	29, 173, 246, 330
SfaNI	GCATC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	194
TasI	AATT	1 cut(s)	194
TscAI	CASTG	2 cut(s)	244, 289
TspDTI	ATGAA	3 cut(s)	78, 81, 102
TspRI	CASTG	2 cut(s)	244, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.