AT2G47630

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006691
Physical Location & Seq
Forward (+)
19534473 .. 19537074
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47630.1

Sequence Viewer

Length: 1056 bp
ATGAAGTCGTCGGAATTCCAATACCACGAGGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGGTTATGGAATGGAGTGTAGCGACTCCATGAAAGAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACTATGAAGGTCATGGAAGGTCCATGGGATCTCGTTGCTACATCAAGAAGTTTGCGAATGTTGTGAATGATTGCTATGACTACTACACATCTATTTGTGCGCAAGAGGAGTACATGGACAAAGGCAGATTCTTGTATGGAGAATCCATGGGAGGCGCAGTCACTTTATTGCTTCACAAAAAAGATCCTTTGTTTTGGAACGGCGCCATTCTAGTTGCTCCAATGTGTAAGATATCTGAGAAGGTGAAGCCACACCCTATAGTGATTAATCTGTTAACTAGAGTCGAAGAAATCATACCTAAATGGAAAATAGTTCCAACAAAAGACGTGATTGACGCTGCTTTCAAGGACCTCGTCAAGCGAGAAGAGGTAAGGAACAACAAGCTGATATATCAAGACAAGCCTAGGCTCAAAACCGCACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGATCCAGAGGTAAGCAAAGCTCTGTACGAGAAAGCTAGCACAAGGGACAAGACGCTCAAGTTGTATCCAGGGATGTGGCACGCTCTGACGTCAGGTGAGCCTGACTGTAACGTGGACCTTGTTTTTGCTGACATCATCAATTGGCTTGACCTTCGAACCGCTGACCCTGCCTCTCTCACTGTCACTCCTATACGAGTTGGTAACACTACGAGCGTCCAGAGGGTAACTACTGTTAACGGCGTTAGTAACGGTCATAGGAGGCCTAAACGTCCCTTCTTCAATCTCCTTTGTGGTTTGAACCGTGGCCGTTTGGTTCCACGATCCACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 ko05225 map00561 map01100 map04714 map04723 map04923 map05225
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

351

Amino Acids

39.71

Weight (kDa)

8.57

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 33 - 275 8.7e-62 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 37 - 156 8.3e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 38 - 270 7.5e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 815
Acc16I TGCGCA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 410
AccII CGCG 1 cut(s) 194
AciI CCGC 4 cut(s) 165, 194, 624, 882
AclWI GGATC 7 cut(s) 73, 86, 244, 386, 719, 732, 1038
AcoI YGGCCR 1 cut(s) 1027
AcsI RAATTY 2 cut(s) 14, 43
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 2 cut(s) 411, 812
AfaI GTAC 2 cut(s) 320, 749
AgsI TTSAA 4 cut(s) 48, 553, 1003, 1021
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 5 cut(s) 107, 185, 592, 743, 758
AluI AGCT 5 cut(s) 107, 185, 592, 743, 758
AlwI GGATC 7 cut(s) 73, 86, 244, 386, 719, 732, 1038
AoxI GGCC 2 cut(s) 983, 1027
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 2 cut(s) 14, 43
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AseI ATTAAT 1 cut(s) 474
AspA2I CCTAGG 1 cut(s) 611
AspLEI GCGC 3 cut(s) 310, 365, 413
AspS9I GGNCC 3 cut(s) 228, 556, 838
AsuHPI GGTGA 2 cut(s) 463, 830
AsuII TTCGAA 1 cut(s) 877
AsuNHI GCTAGC 1 cut(s) 758
AvaII GGWCC 3 cut(s) 228, 556, 838
AvrII CCTAGG 1 cut(s) 611
BamHI GGATCC 2 cut(s) 78, 724
BanI GGYRCC 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BauI CACGAG 2 cut(s) 26, 671
BbsI GAAGAC 2 cut(s) 87, 666
BbvI GCAGC 1 cut(s) 532
BccI CCATC 2 cut(s) 69, 91
BceAI ACGGC 3 cut(s) 424, 976, 1014
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 2 cut(s) 182, 798
BfaI CTAG 5 cut(s) 419, 486, 612, 656, 759
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 414
BfuI GTATCC 2 cut(s) 182, 798
BisI GCNGC 1 cut(s) 546
BlnI CCTAGG 1 cut(s) 611
BlsI GCNGC 1 cut(s) 547
Bme1390I CCNGG 1 cut(s) 792
Bme18I GGWCC 3 cut(s) 228, 556, 838
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 3 cut(s) 228, 556, 838
BmiI GGNNCC 4 cut(s) 80, 412, 726, 1038
BmrFI CCNGG 1 cut(s) 792
BmsI GCATC 1 cut(s) 624
BmtI GCTAGC 1 cut(s) 762
BpiI GAAGAC 2 cut(s) 87, 666
Bpu10I CCTNAGC 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 877
BpuEI CTTGAG 2 cut(s) 650, 764
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 411, 812
BsaJI CCNNGG 6 cut(s) 124, 231, 354, 611, 791, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 892, 922
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 6 cut(s) 124, 231, 354, 611, 791, 1024
BseGI GGATG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 2 cut(s) 985, 1029
BshNI GGYRCC 1 cut(s) 410
BslFI GGGAC 2 cut(s) 782, 978
BsmFI GGGAC 2 cut(s) 782, 978
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 985, 1029
Bsp119I TTCGAA 1 cut(s) 877
Bsp143I GATC 5 cut(s) 78, 236, 391, 724, 1043
Bsp19I CCATGG 3 cut(s) 124, 231, 354
BspACI CCGC 4 cut(s) 165, 194, 624, 882
BspANI GGCC 2 cut(s) 985, 1029
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 4 cut(s) 80, 412, 726, 1038
BspOI GCTAGC 1 cut(s) 762
BspPI GGATC 7 cut(s) 73, 86, 244, 386, 719, 732, 1038
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 410
BssECI CCNNGG 6 cut(s) 124, 231, 354, 611, 791, 1024
BssMI GATC 5 cut(s) 78, 236, 391, 724, 1043
BssNI GRCGYC 2 cut(s) 411, 812
BssSI CACGAG 2 cut(s) 26, 671
BssT1I CCWWGG 4 cut(s) 124, 231, 354, 611
Bst2BI CACGAG 2 cut(s) 26, 671
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 7 cut(s) 718, 830, 904, 955, 974, 1025, 1051
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 2 cut(s) 411, 812
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 3 cut(s) 177, 760, 804
BstDEI CTNAG 2 cut(s) 444, 638
BstDSI CCRYGG 4 cut(s) 124, 231, 354, 1024
BstF5I GGATG 1 cut(s) 801
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 3 cut(s) 310, 365, 413
BstKTI GATC 5 cut(s) 81, 239, 394, 727, 1046
BstMBI GATC 5 cut(s) 78, 236, 391, 724, 1043
BstMWI GCNNNNNNNGC 2 cut(s) 191, 890
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 2 cut(s) 87, 666
BstX2I RGATCY 4 cut(s) 78, 236, 391, 724
BstXI CCANNNNNNTGG 3 cut(s) 109, 131, 798
BstYI RGATCY 4 cut(s) 78, 236, 391, 724
BsuI GTATCC 2 cut(s) 182, 798
BsuRI GGCC 2 cut(s) 985, 1029
BtgI CCRYGG 4 cut(s) 124, 231, 354, 1024
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 723, 900, 1047
Cac8I GCNNGC 3 cut(s) 177, 760, 804
CfoI GCGC 3 cut(s) 310, 365, 413
Cfr13I GGNCC 3 cut(s) 228, 556, 838
CseI GACGC 3 cut(s) 551, 784, 925
Csp6I GTAC 2 cut(s) 319, 748
CviAII CATG 8 cut(s) 69, 125, 154, 221, 232, 322, 355, 649
CviQI GTAC 2 cut(s) 319, 748
DdeI CTNAG 2 cut(s) 444, 638
DinI GGCGCC 1 cut(s) 412
DpnI GATC 5 cut(s) 80, 238, 393, 726, 1045
DpnII GATC 5 cut(s) 78, 236, 391, 724, 1043
EaeI YGGCCR 1 cut(s) 1027
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco130I CCWWGG 4 cut(s) 124, 231, 354, 611
Eco147I AGGCCT 1 cut(s) 985
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 3 cut(s) 228, 556, 838
Eco57I CTGAAG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 790
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 4 cut(s) 124, 231, 354, 611
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
ErhI CCWWGG 4 cut(s) 124, 231, 354, 611
FaeI CATG 8 cut(s) 72, 128, 157, 224, 235, 325, 358, 652
FaqI GGGAC 2 cut(s) 782, 978
FatI CATG 8 cut(s) 68, 124, 153, 220, 231, 321, 354, 648
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 1 cut(s) 808
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 5 cut(s) 419, 486, 612, 656, 759
FspI TGCGCA 1 cut(s) 309
GlaI GCGC 3 cut(s) 309, 364, 412
GluI GCNGC 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 2 cut(s) 985, 1029
HgaI GACGC 3 cut(s) 551, 784, 925
HhaI GCGC 3 cut(s) 310, 365, 413
Hin1I GRCGYC 2 cut(s) 411, 812
Hin1II CATG 8 cut(s) 72, 128, 157, 224, 235, 325, 358, 652
Hin6I GCGC 3 cut(s) 308, 363, 411
HinP1I GCGC 3 cut(s) 308, 363, 411
HincII GTYRAC 2 cut(s) 483, 958
HindII GTYRAC 2 cut(s) 483, 958
HinfI GANTC 5 cut(s) 149, 168, 336, 350, 489
HpaI GTTAAC 2 cut(s) 483, 958
HphI GGTGA 2 cut(s) 463, 830
Hpy166II GTNNAC 3 cut(s) 483, 838, 958
Hpy188I TCNGA 3 cut(s) 13, 445, 810
Hpy188III TCNNGA 5 cut(s) 48, 253, 602, 728, 940
Hpy8I GTNNAC 3 cut(s) 483, 838, 958
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 5 cut(s) 209, 219, 442, 884, 1006
HpyCH4III ACNGT 7 cut(s) 718, 830, 904, 955, 974, 1025, 1051
HpyCH4IV ACGT 5 cut(s) 36, 534, 812, 834, 991
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 890
HpyF3I CTNAG 2 cut(s) 444, 638
HpySE526I ACGT 5 cut(s) 36, 534, 812, 834, 991
Hsp92I GRCGYC 2 cut(s) 411, 812
Hsp92II CATG 8 cut(s) 72, 128, 157, 224, 235, 325, 358, 652
HspAI GCGC 3 cut(s) 308, 363, 411
KasI GGCGCC 1 cut(s) 410
KspAI GTTAAC 2 cut(s) 483, 958
Kzo9I GATC 5 cut(s) 78, 236, 391, 724, 1043
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 1 cut(s) 624
MaeI CTAG 5 cut(s) 419, 486, 612, 656, 759
MaeII ACGT 5 cut(s) 36, 534, 812, 834, 991
MaeIII GTNAC 7 cut(s) 367, 718, 830, 904, 923, 946, 968
MalI GATC 5 cut(s) 80, 238, 393, 726, 1045
MboI GATC 5 cut(s) 78, 236, 391, 724, 1043
MboII GAAGA 7 cut(s) 78, 81, 87, 506, 584, 671, 991
MfeI CAATTG 1 cut(s) 862
MflI RGATCY 4 cut(s) 78, 236, 391, 724
MluCI AATT 3 cut(s) 14, 43, 862
Mly113I GGCGCC 1 cut(s) 411
MlyI GAGTC 2 cut(s) 143, 498
MmeI TCCRAC 1 cut(s) 548
MseI TTAA 3 cut(s) 474, 482, 957
MslI CAYNNNNRTG 2 cut(s) 73, 129
MspA1I CMGCKG 2 cut(s) 185, 884
MspR9I CCNGG 1 cut(s) 792
MunI CAATTG 1 cut(s) 862
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 191, 890
NarI GGCGCC 1 cut(s) 411
NcoI CCATGG 3 cut(s) 124, 231, 354
NdeII GATC 5 cut(s) 78, 236, 391, 724, 1043
NheI GCTAGC 1 cut(s) 758
NlaIII CATG 8 cut(s) 72, 128, 157, 224, 235, 325, 358, 652
NlaIV GGNNCC 4 cut(s) 80, 412, 726, 1038
NmuCI GTSAC 3 cut(s) 367, 718, 904
NsbI TGCGCA 1 cut(s) 309
NspI RCATGY 1 cut(s) 72
NspV TTCGAA 1 cut(s) 877
PceI AGGCCT 1 cut(s) 985
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 3 cut(s) 168, 336, 350
PflFI GACNNNGTC 1 cut(s) 560
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 143, 497
PluTI GGCGCC 1 cut(s) 414
PpsI GAGTC 2 cut(s) 143, 497
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 4 cut(s) 80, 412, 726, 1038
PspPI GGNCC 3 cut(s) 228, 556, 838
PspPPI RGGWCCY 1 cut(s) 556
PsuI RGATCY 4 cut(s) 78, 236, 391, 724
PsyI GACNNNGTC 1 cut(s) 560
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 320, 749
RsaNI GTAC 2 cut(s) 319, 748
RseI CAYNNNNRTG 2 cut(s) 73, 129
SaqAI TTAA 3 cut(s) 474, 482, 957
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 5 cut(s) 78, 236, 391, 724, 1043
Sau96I GGNCC 3 cut(s) 228, 556, 838
SchI GAGTC 2 cut(s) 143, 498
ScrFI CCNGG 1 cut(s) 792
SfaNI GCATC 1 cut(s) 624
SfcI CTRYAG 1 cut(s) 465
SfoI GGCGCC 1 cut(s) 412
SfuI TTCGAA 1 cut(s) 877
SinI GGWCC 3 cut(s) 228, 556, 838
SmiMI CAYNNNNRTG 2 cut(s) 73, 129
SmlI CTYRAG 2 cut(s) 629, 779
SmoI CTYRAG 2 cut(s) 629, 779
Sse9I AATT 3 cut(s) 14, 43, 862
SseBI AGGCCT 1 cut(s) 985
SsiI CCGC 4 cut(s) 165, 194, 624, 882
SspDI GGCGCC 1 cut(s) 410
SspMI CTAG 5 cut(s) 419, 486, 612, 656, 759
StuI AGGCCT 1 cut(s) 985
StyD4I CCNGG 1 cut(s) 790
StyI CCWWGG 4 cut(s) 124, 231, 354, 611
TaaI ACNGT 7 cut(s) 718, 830, 904, 955, 974, 1025, 1051
TaiI ACGT 5 cut(s) 39, 537, 815, 837, 994
TaqI TCGA 2 cut(s) 492, 877
TasI AATT 3 cut(s) 14, 43, 862
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 3 cut(s) 168, 336, 350
Tru1I TTAA 3 cut(s) 474, 482, 957
Tru9I TTAA 3 cut(s) 474, 482, 957
TscAI CASTG 3 cut(s) 723, 907, 1054
TseFI GTSAC 3 cut(s) 367, 718, 904
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 3 cut(s) 367, 718, 904
TspDTI ATGAA 4 cut(s) 17, 170, 228, 665
TspGWI ACGGA 2 cut(s) 717, 737
TspRI CASTG 3 cut(s) 723, 907, 1054
Tth111I GACNNNGTC 1 cut(s) 560
VpaK11BI GGWCC 3 cut(s) 228, 556, 838
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 2 cut(s) 14, 43
XceI RCATGY 1 cut(s) 72
XmaJI CCTAGG 1 cut(s) 611
XspI CTAG 5 cut(s) 419, 486, 612, 656, 759
ZraI GACGTC 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.