Rroxscaffold_7G00173720

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006691
Physical Location & Seq
Forward (+)
13630203 .. 13631525
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173720.1

Sequence Viewer

Length: 867 bp
ATGGACGCTAGTTTATCCAAACAAGTTTTGCCGATGATCTACATTGACTGTAAAGTAACTCGGAGCCTTTTTGGGAAGACAAAAATCAACTGTAACCTAACCCAGGGATTTCATAATGGTGTCACAGCGGAGGAAGACTACAGGGACAAGTGTAGGTTCCTGTATGGAGAATCCATGGGAGGGGCAGTGGCTTTATTGCTTCATAAGAAGGACCCTAAATTTTGGAATGGTGCTGTTCTTGTTGCACCAATGTGTAAGATATCAGAGAAAGTAAAACCGCATCCACTGGTTGTGAATGTATTGACTAGAGTGGAGGAGATTATACCGAAATGGAAGATTGTACCCACCAAAGACGTCATTGATTCAGCCTTCAAGGACCCTGTAAAGCGCGAAGTGATAAGAAGCAACAAGCTTATCTACCAAGACAAGCCGAGGCTGAAAACAGCTTTGGAAATGCTTAGAACTAGCATGAGCCTTGAAGACAGTTTACATGAGGTGAAACTGCCTTTCTTTGTTTTACACGGGGAGGCAGATACAGTTACAGACCCTGAAGTAAGCAAGTCTCTGTACGAAAAAGCCAGCAGCCCAGACAAGACCATAAAATTGTACCCTGGAATGTGGCATGGCTTAACATCAGGAGAGCCTGATGGGAACGTCGAAATCGTGTTTGCAGACATCACAGTTTGGCTTGAGAAGCACACTACAGACAGCAATGTCATGGTTGTGCAGCCAATTCAAACATTTAATGACGGCATTGTGAAGTTGAACACCACAGCATCATCACCTGAAACCATGAACAAACGGCAGCAAGGGATCTATTGTTGTGGGTTAAAGGGACGAAGATTACAACATCATTCAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 ko05225 map00561 map01100 map04714 map04723 map04923 map05225
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

288

Amino Acids

32.43

Weight (kDa)

8.75

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 44 - 215 7.4e-42 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 713
AatII GACGTC 1 cut(s) 357
AccII CGCG 1 cut(s) 390
AciI CCGC 2 cut(s) 128, 278
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 3 cut(s) 342, 569, 608
AfiI CCNNNNNNNGG 2 cut(s) 103, 180
AgsI TTSAA 4 cut(s) 373, 479, 737, 766
AjnI CCWGG 2 cut(s) 102, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AleI CACNNNNGTG 1 cut(s) 250
AluBI AGCT 2 cut(s) 412, 446
AluI AGCT 2 cut(s) 412, 446
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 1 cut(s) 821
AlwNI CAGNNNCTG 1 cut(s) 548
ApeKI GCWGC 3 cut(s) 582, 727, 805
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 211, 376
AsuHPI GGTGA 2 cut(s) 508, 774
AvaII GGWCC 2 cut(s) 211, 376
BarI GAAGNNNNNNTAC 2 cut(s) 471, 503
BbsI GAAGAC 3 cut(s) 83, 141, 486
BbvI GCAGC 3 cut(s) 594, 739, 817
BccI CCATC 1 cut(s) 641
BceAI ACGGC 2 cut(s) 766, 818
BciT130I CCWGG 2 cut(s) 104, 612
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 3 cut(s) 9, 306, 465
BfmI CTRYAG 2 cut(s) 139, 702
BisI GCNGC 3 cut(s) 583, 728, 806
BlsI GCNGC 3 cut(s) 584, 729, 807
Bme1390I CCNGG 2 cut(s) 104, 612
Bme18I GGWCC 2 cut(s) 211, 376
BmgT120I GGNCC 2 cut(s) 211, 376
BmiI GGNNCC 4 cut(s) 65, 158, 213, 378
BmrFI CCNGG 2 cut(s) 104, 612
BmsI GCATC 2 cut(s) 289, 785
BpiI GAAGAC 3 cut(s) 83, 141, 486
BpuEI CTTGAG 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 5 cut(s) 102, 103, 174, 431, 610
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 180
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 2 cut(s) 718, 867
BseBI CCWGG 2 cut(s) 104, 612
BseDI CCNNGG 5 cut(s) 102, 103, 174, 431, 610
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 103, 180
BseMI GCAATG 2 cut(s) 718, 867
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 3 cut(s) 594, 739, 817
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 158, 849
BslI CCNNNNNNNGG 2 cut(s) 103, 180
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 158, 849
Bsp143I GATC 2 cut(s) 36, 813
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 2 cut(s) 128, 278
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 4 cut(s) 65, 158, 213, 378
BspPI GGATC 1 cut(s) 821
BsrDI GCAATG 2 cut(s) 718, 867
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 5 cut(s) 102, 103, 174, 431, 610
BssMI GATC 2 cut(s) 36, 813
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 104, 612
Bst4CI ACNGT 5 cut(s) 50, 92, 485, 538, 682
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 174
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 39, 816
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 2 cut(s) 36, 813
BstMWI GCNNNNNNNGC 1 cut(s) 694
BstNI CCWGG 2 cut(s) 104, 612
BstSCI CCNGG 2 cut(s) 102, 610
BstSFI CTRYAG 2 cut(s) 139, 702
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 594, 739, 817
BstV2I GAAGAC 3 cut(s) 83, 141, 486
BstX2I RGATCY 1 cut(s) 813
BstYI RGATCY 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 284
Cac8I GCNNGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 548
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 211, 376
CseI GACGC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 341, 568, 607
CviAII CATG 6 cut(s) 175, 469, 491, 623, 718, 793
CviQI GTAC 3 cut(s) 341, 568, 607
DdeI CTNAG 1 cut(s) 458
DpnI GATC 2 cut(s) 38, 815
DpnII GATC 2 cut(s) 36, 813
DrdI GACNNNNNNGTC 1 cut(s) 713
DseDI GACNNNNNNGTC 1 cut(s) 713
Eco130I CCWWGG 1 cut(s) 174
Eco32I GATATC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 211, 376
Eco57I CTGAAG 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO109I RGGNCCY 2 cut(s) 211, 376
EcoRII CCWGG 2 cut(s) 102, 610
EcoRV GATATC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 6 cut(s) 178, 472, 494, 626, 721, 796
FaqI GGGAC 2 cut(s) 158, 849
FatI CATG 6 cut(s) 174, 468, 490, 622, 717, 792
Fnu4HI GCNGC 3 cut(s) 583, 728, 806
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 583, 728, 806
FspBI CTAG 3 cut(s) 9, 306, 465
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 583, 728, 806
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 6 cut(s) 178, 472, 494, 626, 721, 796
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 2 cut(s) 170, 362
HphI GGTGA 2 cut(s) 508, 774
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 2 cut(s) 63, 265
Hpy188III TCNNGA 1 cut(s) 636
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 2 cut(s) 202, 379
HpyCH4III ACNGT 5 cut(s) 50, 92, 485, 538, 682
HpyCH4IV ACGT 2 cut(s) 354, 654
HpyCH4V TGCA 3 cut(s) 245, 671, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 694
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 2 cut(s) 354, 654
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 6 cut(s) 178, 472, 494, 626, 721, 796
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 36, 813
LmnI GCTCC 1 cut(s) 63
Lsp1109I GCAGC 3 cut(s) 594, 739, 817
LweI GCATC 2 cut(s) 289, 785
MaeI CTAG 3 cut(s) 9, 306, 465
MaeII ACGT 2 cut(s) 354, 654
MaeIII GTNAC 4 cut(s) 55, 92, 121, 538
MalI GATC 2 cut(s) 38, 815
MboI GATC 2 cut(s) 36, 813
MboII GAAGA 5 cut(s) 88, 146, 346, 491, 852
MflI RGATCY 1 cut(s) 813
MluCI AATT 3 cut(s) 218, 602, 732
MnlI CCTC 6 cut(s) 124, 173, 307, 426, 487, 520
MseI TTAA 3 cut(s) 629, 744, 830
MslI CAYNNNNRTG 3 cut(s) 117, 250, 722
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 104, 612
MvaI CCWGG 2 cut(s) 104, 612
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 694
NcoI CCATGG 1 cut(s) 174
NdeII GATC 2 cut(s) 36, 813
NlaIII CATG 6 cut(s) 178, 472, 494, 626, 721, 796
NlaIV GGNNCC 4 cut(s) 65, 158, 213, 378
NmeAIII GCCGAG 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 250
PasI CCCWGGG 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PfeI GAWTC 2 cut(s) 170, 362
PkrI GCNGC 3 cut(s) 584, 729, 807
PpuMI RGGWCCY 2 cut(s) 211, 376
Psp5II RGGWCCY 2 cut(s) 211, 376
Psp6I CCWGG 2 cut(s) 102, 610
PspGI CCWGG 2 cut(s) 102, 610
PspN4I GGNNCC 4 cut(s) 65, 158, 213, 378
PspPI GGNCC 2 cut(s) 211, 376
PspPPI RGGWCCY 2 cut(s) 211, 376
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 813
RsaI GTAC 3 cut(s) 342, 569, 608
RsaNI GTAC 3 cut(s) 341, 568, 607
RseI CAYNNNNRTG 3 cut(s) 117, 250, 722
SaqAI TTAA 3 cut(s) 629, 744, 830
SatI GCNGC 3 cut(s) 583, 728, 806
Sau3AI GATC 2 cut(s) 36, 813
Sau96I GGNCC 2 cut(s) 211, 376
ScrFI CCNGG 2 cut(s) 104, 612
SetI ASST 8 cut(s) 99, 158, 357, 414, 448, 498, 657, 787
SfaNI GCATC 2 cut(s) 289, 785
SfcI CTRYAG 2 cut(s) 139, 702
SinI GGWCC 2 cut(s) 211, 376
SmiMI CAYNNNNRTG 3 cut(s) 117, 250, 722
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 3 cut(s) 218, 602, 732
SsiI CCGC 2 cut(s) 128, 278
SspMI CTAG 3 cut(s) 9, 306, 465
StyD4I CCNGG 2 cut(s) 102, 610
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 5 cut(s) 50, 92, 485, 538, 682
TaiI ACGT 2 cut(s) 357, 657
TaqI TCGA 1 cut(s) 657
TasI AATT 3 cut(s) 218, 602, 732
TfiI GAWTC 2 cut(s) 170, 362
Tru1I TTAA 3 cut(s) 629, 744, 830
Tru9I TTAA 3 cut(s) 629, 744, 830
TscAI CASTG 2 cut(s) 192, 291
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 582, 727, 805
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 101, 191, 809
TspRI CASTG 2 cut(s) 192, 291
VpaK11BI GGWCC 2 cut(s) 211, 376
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 218
XspI CTAG 3 cut(s) 9, 306, 465
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.