Rh6CG367400

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006691
Physical Location & Seq
Reverse (-)
55529199 .. 55537138
7940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG367400.1

Sequence Viewer

Length: 1212 bp
ATGGCAGGGGGAGCTATTGCTGCTCTATCAAGAAGCTGGAAACAGATCCCTGAAGATGATCTTAGAGATCCGAGTTTGAATCTGCTGGATGGAAACATATACGGTCGTCGAGTTGGGTTTGATTTAATTCCTAGTCTATTTTTTTCTCTCTCTTTTCTGTCGTTTGTTCTAAACTTGAACATGGATGGGGAATATCAAGAAGCTTACATAAGGAATTCGAGAGGAGTGCAGCTTTTCACTTGCAGATGGTTGCCTTTCTCTTCCCCAAAGGCCCTTGTTTTCCTTTGCCACGGTTACGGCATGGAGTGCAGCGGTTTCATGAAAGAATGCGGGGTCCGGCTAGCTAATGCCGGGTATGCGGTGTTCGGGATCGATTACGAGGGCCACGGACGTTCTCGGGGGGCAAGGTGTTACATTAAGAAGTTCGAAAACATCGTTAACGATTGCAATGACTTCTTCAAGTCGATTTGTGCGGAGGAAGAGTACAGGGACAAGTGTAGGTTCTTGTATGGGGAATCCATGGGAGGGGCAGTGGCCTTATTGCTTCATAAGAAGGATCCTAAATTTTGGAATGGTGCTGTTCTTGTTGCACCAATGTGTAAGATATCAGAGAAAGTAAAGCCGCATCCACTGGTTGTGAATGTATTGACTAGAGTGGAGGAGATTATACCGAAATGGAAGATTGTACCCACCAAAGACGTCATTGATTCAGCCTTCAAGGACCCTGTAAAGCGCGAAGTGATAAGAAGCAACAAGCTTATCTACCAAGACAAGCCGAGGCTGAAAACAGCTTTGGAAATGCTTAGAACTAGCATGAGCCTTGAAGACAGTTTACATGAGGTGAAACTGCCTTTCTTTGTTTTACACGGGGAGGCAGATACAGTTACGGACCCTGAAGTAAGCAAGTGTCTGTACGAAAAAGCCAGCAGCCCAGACAAAACCATAAAATTGTACCCTGGAATGTGGCATGCCTTAACATCAGGAGAGCCTGATGGGAACGTCGAAATCGTGTTTGCAGACATCACAGTTTGGCTTGAGAAGCACACTACAGACAGCACTGTCATGGTTGTGCAGCCAATTCAAGCATTTAATGACGGCATTGTGAAGTTGAACACCACAGCATCATCACCTGAAACCATGAACAAGCGGCAGAAAGGGAGCTATTTTTGTGGGTTAAAGGGACGAAGATTACAACATCACTCAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 ko05225 map00561 map01100 map04714 map04723 map04923 map05225
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

403

Amino Acids

45.45

Weight (kDa)

8.37

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 88 - 330 5.7e-65 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 92 - 203 3.4e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 93 - 326 1.3e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1058
AatII GACGTC 1 cut(s) 702
AccII CGCG 1 cut(s) 735
AciI CCGC 6 cut(s) 312, 330, 359, 473, 623, 1147
AclWI GGATC 5 cut(s) 40, 62, 377, 551, 564
AcsI RAATTY 2 cut(s) 214, 563
AcuI CTGAAG 2 cut(s) 72, 915
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 4 cut(s) 485, 687, 914, 953
AfiI CCNNNNNNNGG 1 cut(s) 525
AgsI TTSAA 7 cut(s) 79, 178, 460, 718, 824, 1082, 1111
AjnI CCWGG 1 cut(s) 955
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AleI CACNNNNGTG 1 cut(s) 595
AluBI AGCT 8 cut(s) 14, 36, 203, 232, 344, 757, 791, 1161
AluI AGCT 8 cut(s) 14, 36, 203, 232, 344, 757, 791, 1161
AlwI GGATC 5 cut(s) 40, 62, 377, 551, 564
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 3 cut(s) 270, 382, 534
ApeKI GCWGC 5 cut(s) 20, 229, 309, 927, 1072
ApoI RAATTY 2 cut(s) 214, 563
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 5 cut(s) 271, 334, 382, 721, 889
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 853, 1119
AsuII TTCGAA 1 cut(s) 426
AsuNHI GCTAGC 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 3 cut(s) 334, 721, 889
BamHI GGATCC 1 cut(s) 556
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
BbsI GAAGAC 1 cut(s) 831
BbvI GCAGC 5 cut(s) 7, 241, 321, 939, 1084
BccI CCATC 4 cut(s) 83, 179, 240, 986
BceAI ACGGC 2 cut(s) 313, 1111
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 957
BcnI CCSGG 1 cut(s) 352
BfaI CTAG 4 cut(s) 132, 341, 651, 810
BfmI CTRYAG 1 cut(s) 1047
BisI GCNGC 7 cut(s) 21, 230, 310, 623, 928, 1073, 1148
BlsI GCNGC 7 cut(s) 22, 231, 311, 624, 929, 1074, 1149
Bme1390I CCNGG 2 cut(s) 352, 957
Bme18I GGWCC 3 cut(s) 334, 721, 889
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 5 cut(s) 271, 334, 382, 721, 889
BmiI GGNNCC 4 cut(s) 335, 558, 723, 891
BmrFI CCNGG 2 cut(s) 352, 957
BmsI GCATC 2 cut(s) 634, 1130
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 1 cut(s) 352
Bsa29I ATCGAT 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 5 cut(s) 289, 385, 519, 776, 955
BsaXI ACNNNNNCTCC 4 cut(s) 467, 497, 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 2 cut(s) 454, 1212
BseBI CCWGG 1 cut(s) 957
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 289, 385, 519, 776, 955
BseGI GGATG 3 cut(s) 94, 190, 625
BseLI CCNNNNNNNGG 1 cut(s) 525
BseMI GCAATG 2 cut(s) 454, 1212
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 2 cut(s) 237, 674
BseXI GCAGC 5 cut(s) 7, 241, 321, 939, 1084
BsgI GTGCAG 3 cut(s) 248, 328, 1091
Bsh1236I CGCG 1 cut(s) 735
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 272, 384, 536
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 2 cut(s) 337, 351
BslFI GGGAC 2 cut(s) 503, 1194
BslI CCNNNNNNNGG 1 cut(s) 525
BsmFI GGGAC 2 cut(s) 503, 1194
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 3 cut(s) 272, 384, 536
BsoBI CYCGRG 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 426
Bsp143I GATC 5 cut(s) 45, 58, 67, 369, 556
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 6 cut(s) 312, 330, 359, 473, 623, 1147
BspANI GGCC 3 cut(s) 272, 384, 536
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 1 cut(s) 735
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 4 cut(s) 335, 558, 723, 891
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 5 cut(s) 40, 62, 377, 551, 564
BspT104I TTCGAA 1 cut(s) 426
BsrDI GCAATG 2 cut(s) 454, 1212
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 5 cut(s) 289, 385, 519, 776, 955
BssMI GATC 5 cut(s) 45, 58, 67, 369, 556
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 6 cut(s) 104, 293, 830, 883, 1027, 1060
Bst6I CTCTTC 2 cut(s) 265, 474
BstACI GRCGYC 1 cut(s) 699
BstAPI GCANNNNNTGC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 3 cut(s) 342, 925, 969
BstDEI CTNAG 3 cut(s) 62, 803, 1201
BstDSI CCRYGG 3 cut(s) 289, 385, 519
BstF5I GGATG 3 cut(s) 94, 190, 625
BstFNI CGCG 1 cut(s) 735
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 5 cut(s) 48, 61, 70, 372, 559
BstMBI GATC 5 cut(s) 45, 58, 67, 369, 556
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 306, 356, 1039
BstNI CCWGG 1 cut(s) 957
BstNSI RCATGY 1 cut(s) 971
BstSCI CCNGG 2 cut(s) 350, 955
BstSFI CTRYAG 1 cut(s) 1047
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 5 cut(s) 7, 241, 321, 939, 1084
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 3 cut(s) 45, 67, 556
BstYI RGATCY 3 cut(s) 45, 67, 556
Bsu15I ATCGAT 1 cut(s) 372
BsuRI GGCC 3 cut(s) 272, 384, 536
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 3 cut(s) 289, 385, 519
BtsCI GGATG 3 cut(s) 94, 190, 625
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 537, 629, 1056
Cac8I GCNNGC 3 cut(s) 342, 925, 969
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 735
Cfr13I GGNCC 5 cut(s) 271, 334, 382, 721, 889
ClaI ATCGAT 1 cut(s) 372
Csp6I GTAC 4 cut(s) 484, 686, 913, 952
CviAII CATG 9 cut(s) 181, 301, 319, 520, 814, 836, 968, 1063, 1138
CviQI GTAC 4 cut(s) 484, 686, 913, 952
DdeI CTNAG 3 cut(s) 62, 803, 1201
DpnI GATC 5 cut(s) 47, 60, 69, 371, 558
DpnII GATC 5 cut(s) 45, 58, 67, 369, 556
DrdI GACNNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 1058
Eam1104I CTCTTC 2 cut(s) 265, 474
EarI CTCTTC 2 cut(s) 265, 474
Eco130I CCWWGG 1 cut(s) 519
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 3 cut(s) 334, 721, 889
Eco57I CTGAAG 2 cut(s) 72, 915
Eco88I CYCGRG 1 cut(s) 396
EcoO109I RGGNCCY 2 cut(s) 271, 721
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 955
EcoRV GATATC 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 9 cut(s) 184, 304, 322, 523, 817, 839, 971, 1066, 1141
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 2 cut(s) 503, 1194
FatI CATG 9 cut(s) 180, 300, 318, 519, 813, 835, 967, 1062, 1137
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 7 cut(s) 21, 230, 310, 623, 928, 1073, 1148
FokI GGATG 3 cut(s) 101, 197, 612
Fsp4HI GCNGC 7 cut(s) 21, 230, 310, 623, 928, 1073, 1148
FspBI CTAG 4 cut(s) 132, 341, 651, 810
GlaI GCGC 1 cut(s) 734
GluI GCNGC 7 cut(s) 21, 230, 310, 623, 928, 1073, 1148
HaeIII GGCC 3 cut(s) 272, 384, 536
HapII CCGG 2 cut(s) 337, 351
HhaI GCGC 1 cut(s) 735
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 9 cut(s) 184, 304, 322, 523, 817, 839, 971, 1066, 1141
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 2 cut(s) 201, 755
HinfI GANTC 3 cut(s) 79, 515, 707
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 2 cut(s) 337, 351
HphI GGTGA 2 cut(s) 853, 1119
Hpy166II GTNNAC 2 cut(s) 439, 833
Hpy188I TCNGA 2 cut(s) 72, 610
Hpy188III TCNNGA 6 cut(s) 30, 197, 219, 319, 367, 981
Hpy8I GTNNAC 2 cut(s) 439, 833
Hpy99I CGWCG 2 cut(s) 111, 1004
HpyAV CCTTC 2 cut(s) 547, 724
HpyCH4III ACNGT 6 cut(s) 104, 293, 830, 883, 1027, 1060
HpyCH4IV ACGT 3 cut(s) 391, 699, 999
HpyCH4V TGCA 7 cut(s) 229, 243, 309, 447, 590, 1016, 1072
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 306, 356, 1039
HpyF3I CTNAG 3 cut(s) 62, 803, 1201
HpySE526I ACGT 3 cut(s) 391, 699, 999
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 9 cut(s) 184, 304, 322, 523, 817, 839, 971, 1066, 1141
HspAI GCGC 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 5 cut(s) 45, 58, 67, 369, 556
LmnI GCTCC 2 cut(s) 11, 1158
Lsp1109I GCAGC 5 cut(s) 7, 241, 321, 939, 1084
LweI GCATC 2 cut(s) 634, 1130
MaeI CTAG 4 cut(s) 132, 341, 651, 810
MaeII ACGT 3 cut(s) 391, 699, 999
MaeIII GTNAC 3 cut(s) 293, 410, 883
MalI GATC 5 cut(s) 47, 60, 69, 371, 558
MboI GATC 5 cut(s) 45, 58, 67, 369, 556
MboII GAAGA 7 cut(s) 65, 252, 448, 491, 691, 836, 1197
MflI RGATCY 3 cut(s) 45, 67, 556
MluCI AATT 5 cut(s) 126, 214, 563, 947, 1077
MnlI CCTC 8 cut(s) 215, 373, 469, 518, 652, 771, 832, 865
MseI TTAA 6 cut(s) 125, 417, 438, 974, 1089, 1175
MslI CAYNNNNRTG 3 cut(s) 595, 1061, 1067
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 2 cut(s) 337, 351
MspR9I CCNGG 2 cut(s) 352, 957
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 957
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 306, 356, 1039
NciI CCSGG 1 cut(s) 352
NcoI CCATGG 1 cut(s) 519
NdeII GATC 5 cut(s) 45, 58, 67, 369, 556
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 9 cut(s) 184, 304, 322, 523, 817, 839, 971, 1066, 1141
NlaIV GGNNCC 4 cut(s) 335, 558, 723, 891
NmeAIII GCCGAG 1 cut(s) 801
NspI RCATGY 1 cut(s) 971
NspV TTCGAA 1 cut(s) 426
OliI CACNNNNGTG 1 cut(s) 595
PaeI GCATGC 1 cut(s) 971
PagI TCATGA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 2 cut(s) 432, 1005
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 3 cut(s) 79, 515, 707
PkrI GCNGC 7 cut(s) 22, 231, 311, 624, 929, 1074, 1149
PpuMI RGGWCCY 1 cut(s) 721
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 1 cut(s) 955
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 4 cut(s) 335, 558, 723, 891
PspPI GGNCC 5 cut(s) 271, 334, 382, 721, 889
PspPPI RGGWCCY 1 cut(s) 721
PsrI GAACNNNNNNTAC 2 cut(s) 347, 379
PsuI RGATCY 3 cut(s) 45, 67, 556
RsaI GTAC 4 cut(s) 485, 687, 914, 953
RsaNI GTAC 4 cut(s) 484, 686, 913, 952
RseI CAYNNNNRTG 3 cut(s) 595, 1061, 1067
SaqAI TTAA 6 cut(s) 125, 417, 438, 974, 1089, 1175
SatI GCNGC 7 cut(s) 21, 230, 310, 623, 928, 1073, 1148
Sau3AI GATC 5 cut(s) 45, 58, 67, 369, 556
Sau96I GGNCC 5 cut(s) 271, 334, 382, 721, 889
ScrFI CCNGG 2 cut(s) 352, 957
SfaNI GCATC 2 cut(s) 634, 1130
SfcI CTRYAG 1 cut(s) 1047
SfuI TTCGAA 1 cut(s) 426
SinI GGWCC 3 cut(s) 334, 721, 889
SmiMI CAYNNNNRTG 3 cut(s) 595, 1061, 1067
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
SphI GCATGC 1 cut(s) 971
Sse9I AATT 5 cut(s) 126, 214, 563, 947, 1077
SsiI CCGC 6 cut(s) 312, 330, 359, 473, 623, 1147
SspMI CTAG 4 cut(s) 132, 341, 651, 810
StyD4I CCNGG 2 cut(s) 350, 955
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 6 cut(s) 104, 293, 830, 883, 1027, 1060
TaiI ACGT 3 cut(s) 394, 702, 1002
TaqI TCGA 6 cut(s) 109, 218, 372, 426, 464, 1002
TasI AATT 5 cut(s) 126, 214, 563, 947, 1077
TatI WGTACW 1 cut(s) 483
TauI GCSGC 2 cut(s) 625, 1150
TfiI GAWTC 3 cut(s) 79, 515, 707
Tru1I TTAA 6 cut(s) 125, 417, 438, 974, 1089, 1175
Tru9I TTAA 6 cut(s) 125, 417, 438, 974, 1089, 1175
TscAI CASTG 3 cut(s) 537, 636, 1063
TseI GCWGC 5 cut(s) 20, 229, 309, 927, 1072
TspDTI ATGAA 4 cut(s) 307, 335, 536, 1154
TspGWI ACGGA 2 cut(s) 402, 902
TspRI CASTG 3 cut(s) 537, 636, 1063
VpaK11BI GGWCC 3 cut(s) 334, 721, 889
XapI RAATTY 2 cut(s) 214, 563
XceI RCATGY 1 cut(s) 971
XspI CTAG 4 cut(s) 132, 341, 651, 810
ZraI GACGTC 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.