Rorug06G0240100

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006691
Physical Location & Seq
Forward (+)
38252648 .. 38252979
332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0240100.1

Sequence Viewer

Length: 255 bp
ATGGTCAATCTGTCGGAAGTGGCCGTATTTGCTGCCCGTTTGCCTCGACTAAGAGCAATTGTGCTGCATAGTTTGATATTAGAAGATAATCGAGCTGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTACTGATTTTGCTTTATGGAAGAAGTTATGTTACAGTCGATCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGCACTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 ko05225 map00561 map01100 map04714 map04723 map04923 map05225
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

7.91

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 27 - 72 7.6e-07 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 21
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 32, 64
AsuHPI GGTGA 2 cut(s) 110, 200
BaeGI GKGCMC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 19, 51
BceAI ACGGC 1 cut(s) 8
BcgI CGANNNNNNTGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 227
BisI GCNGC 2 cut(s) 33, 65
BlsI GCNGC 2 cut(s) 34, 66
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 2 cut(s) 19, 51
BshFI GGCC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 209
BspANI GGCC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 112, 170, 206
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 209
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 19, 51
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 108, 215, 252
CsiI ACCWGGT 1 cut(s) 225
CviAII CATG 2 cut(s) 210, 252
CviJI RGCY 2 cut(s) 23, 95
CviKI_1 RGCY 2 cut(s) 23, 95
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 2 cut(s) 213, 255
FaiI YATR 6 cut(s) 69, 151, 163, 211, 236, 253
FaqI GGGAC 1 cut(s) 215
FatI CATG 2 cut(s) 209, 251
Fnu4HI GCNGC 2 cut(s) 33, 65
Fsp4HI GCNGC 2 cut(s) 33, 65
GluI GCNGC 2 cut(s) 33, 65
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 2 cut(s) 213, 255
HinfI GANTC 2 cut(s) 105, 116
HphI GGTGA 2 cut(s) 110, 200
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 179, 205
HpyCH4III ACNGT 3 cut(s) 112, 170, 206
HpyCH4V TGCA 3 cut(s) 67, 179, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 2 cut(s) 213, 255
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 5 cut(s) 81, 184, 203, 212, 239
Lsp1109I GCAGC 2 cut(s) 19, 51
MabI ACCWGGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 106, 164
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 4 cut(s) 95, 136, 166, 233
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 209
NdeII GATC 1 cut(s) 173
NlaIII CATG 2 cut(s) 213, 255
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 34, 66
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
SatI GCNGC 2 cut(s) 33, 65
Sau3AI GATC 1 cut(s) 173
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 217
SetI ASST 3 cut(s) 97, 190, 228
SexAI ACCWGGT 1 cut(s) 225
Sse9I AATT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 3 cut(s) 112, 170, 206
TaqI TCGA 4 cut(s) 46, 91, 172, 239
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 3 cut(s) 115, 222, 252
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 32, 64
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 3 cut(s) 115, 222, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.