Rmu_co8345959.1_g000001

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8345959.1
OG0006691
Physical Location & Seq
Reverse (-)
2 .. 964
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8345959.1_g000001.1.cds

Sequence Viewer

Length: 691 bp
atgggaggggcagtggccttattgcttcataagaaggatcctaaattttggaatggtgctgttcttgttgcaccaatgtgtaagatatcagagaaagtaaagccgcatccactggttgtgaatgtattgactagagtggaggagattataccgaaatggaagattgtacccaccaaagacgtcattgattcagccttcaaggaccctgtaaagcgcgaagtgataagaagcaacaagcttatctaccaagacaagccgaggctgaaaacagctttggaaatgcttagaactagcatgagccttgaagacagtttacatgaggtgaaactgcctttctttgttttacacggggaggcagatacagttacagaccctgaagtaagcaagtctctgtacgaaaaagccagcagcccagacaagaccataaaattgtaccctggaatgtggcatgccttaacatcaggagagcctgatgggaacgtcgaaatcgtgtttgcagacatcacagtttggcttgagaagcacactacagacagcaatgtcatggttgtgcagccaattcaaacatttaatgacggcattgtgaagttgaacaccacggcatcatcacctgaaaccatgaacaaacggcagcaagggatctattgttgtgggttaaagggacgaagattacaacatcactcagcaatgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 ko05225 map00561 map01100 map04714 map04723 map04923 map05225
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

230

Amino Acids

25.82

Weight (kDa)

8.85

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 539
AatII GACGTC 1 cut(s) 183
AccII CGCG 1 cut(s) 216
AciI CCGC 1 cut(s) 104
AclWI GGATC 3 cut(s) 32, 45, 647
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 168, 395, 434
AgsI TTSAA 4 cut(s) 199, 305, 563, 592
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 76
AluBI AGCT 2 cut(s) 238, 272
AluI AGCT 2 cut(s) 238, 272
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 3 cut(s) 32, 45, 647
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 408, 553, 631
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 334, 600
AvaII GGWCC 1 cut(s) 202
BamHI GGATCC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 297, 329
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 420, 565, 643
BccI CCATC 1 cut(s) 467
BceAI ACGGC 3 cut(s) 592, 615, 644
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 2 cut(s) 132, 291
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 4 cut(s) 104, 409, 554, 632
BlsI GCNGC 4 cut(s) 105, 410, 555, 633
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 39, 204
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 2 cut(s) 115, 611
BpiI GAAGAC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 257, 436, 597
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 257, 436, 597
BseGI GGATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 544
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 420, 565, 643
BsgI GTGCAG 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 17
BslFI GGGAC 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 675
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 37, 639
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 17
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 39, 204
BspPI GGATC 3 cut(s) 32, 45, 647
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 3 cut(s) 257, 436, 597
BssMI GATC 2 cut(s) 37, 639
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 311, 364, 508
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 406, 450
BstDEI CTNAG 2 cut(s) 284, 682
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 2 cut(s) 40, 642
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 37, 639
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 528
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 420, 565, 643
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 37, 639
BstYI RGATCY 2 cut(s) 37, 639
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 110
Cac8I GCNNGC 2 cut(s) 406, 450
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 3 cut(s) 167, 394, 433
CviAII CATG 5 cut(s) 295, 317, 449, 544, 619
CviQI GTAC 3 cut(s) 167, 394, 433
DdeI CTNAG 2 cut(s) 284, 682
DpnI GATC 2 cut(s) 39, 641
DpnII GATC 2 cut(s) 37, 639
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 87
FaeI CATG 5 cut(s) 298, 320, 452, 547, 622
FaiI YATR 8 cut(s) 30, 149, 296, 318, 425, 450, 545, 620
FaqI GGGAC 1 cut(s) 675
FatI CATG 5 cut(s) 294, 316, 448, 543, 618
Fnu4HI GCNGC 4 cut(s) 104, 409, 554, 632
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 4 cut(s) 104, 409, 554, 632
FspBI CTAG 2 cut(s) 132, 291
GlaI GCGC 1 cut(s) 215
GluI GCNGC 4 cut(s) 104, 409, 554, 632
HaeIII GGCC 1 cut(s) 17
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 5 cut(s) 298, 320, 452, 547, 622
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 188
HphI GGTGA 2 cut(s) 334, 600
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 462
Hpy8I GTNNAC 1 cut(s) 314
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 2 cut(s) 28, 205
HpyCH4III ACNGT 3 cut(s) 311, 364, 508
HpyCH4IV ACGT 2 cut(s) 180, 480
HpyCH4V TGCA 3 cut(s) 71, 497, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 2 cut(s) 284, 682
HpySE526I ACGT 2 cut(s) 180, 480
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 5 cut(s) 298, 320, 452, 547, 622
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 2 cut(s) 37, 639
Lsp1109I GCAGC 3 cut(s) 420, 565, 643
LweI GCATC 2 cut(s) 115, 611
MaeI CTAG 2 cut(s) 132, 291
MaeII ACGT 2 cut(s) 180, 480
MaeIII GTNAC 1 cut(s) 364
MalI GATC 2 cut(s) 39, 641
MboI GATC 2 cut(s) 37, 639
MboII GAAGA 3 cut(s) 172, 317, 678
MflI RGATCY 2 cut(s) 37, 639
MluCI AATT 3 cut(s) 44, 428, 558
MnlI CCTC 4 cut(s) 133, 252, 313, 346
MseI TTAA 3 cut(s) 455, 570, 656
MslI CAYNNNNRTG 2 cut(s) 76, 548
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 2 cut(s) 37, 639
NlaIII CATG 5 cut(s) 298, 320, 452, 547, 622
NlaIV GGNNCC 2 cut(s) 39, 204
NmeAIII GCCGAG 1 cut(s) 282
NspI RCATGY 1 cut(s) 452
OliI CACNNNNGTG 1 cut(s) 76
PaeI GCATGC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 105, 410, 555, 633
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 39, 204
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 37, 639
RsaI GTAC 3 cut(s) 168, 395, 434
RsaNI GTAC 3 cut(s) 167, 394, 433
RseI CAYNNNNRTG 2 cut(s) 76, 548
SaqAI TTAA 3 cut(s) 455, 570, 656
SatI GCNGC 4 cut(s) 104, 409, 554, 632
Sau3AI GATC 2 cut(s) 37, 639
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 438
SetI ASST 6 cut(s) 183, 240, 274, 324, 483, 613
SfaNI GCATC 2 cut(s) 115, 611
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 2 cut(s) 76, 548
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SphI GCATGC 1 cut(s) 452
Sse9I AATT 3 cut(s) 44, 428, 558
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 132, 291
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 3 cut(s) 311, 364, 508
TaiI ACGT 2 cut(s) 183, 483
TaqI TCGA 1 cut(s) 483
TasI AATT 3 cut(s) 44, 428, 558
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 3 cut(s) 455, 570, 656
Tru9I TTAA 3 cut(s) 455, 570, 656
TscAI CASTG 2 cut(s) 18, 117
TseI GCWGC 3 cut(s) 408, 553, 631
TspDTI ATGAA 2 cut(s) 17, 635
TspRI CASTG 2 cut(s) 18, 117
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 44
XceI RCATGY 1 cut(s) 452
XspI CTAG 2 cut(s) 132, 291
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.