Rorug06G0240300

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006691
Physical Location & Seq
Forward (+)
38303522 .. 38305139
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0240300.1

Sequence Viewer

Length: 843 bp
ATGGTTTTCTCTTCCTTTTCATACTACTACACTTTGTGGATTCTGATCAGCAAAATCAAAATGGCTTTGTTTCTTTGCACATTCCTCTTCTTTCTCGTCTCCTCTGCTACTGCCTGTGATCGCTGTGTGCATCAAACCAAGGCAGCTTACTTCTCCAAAGCCGCTGCACTTTCTTCTGGGGCTTGTGGGTATGGTTCTTTAGCTTTGGGACTTAGTGGTGGACACCTTGCTGCTGCTGTGCCTTCAATTTATAAAGATGGAGCTGGTTGTGGTTCATGTTTTCAGATAAGATGTAAGAATGCAACACTCTGTACAAAACAAGGGACTAGAGTGATCACAAGTGATCTCAATCACAATAACCAAACAGATTTTGTTCTAAGCAGCAGAGCTTTCATGGCCATGGCTCAAAAGGATTTGGGCCAGGACATTTTGAAACATGGAATTGTGGATGTGGAGTATAAAAGGGTACCATGTGAATACAAGAACCAAAACTTAGCCTTACGTGTGGAAGAATCAAGCAAGAAGCCACATTACTTAGCAGTCAAAGTTCTATACCAAGGTGGTCAGACAGAGATAGTAGCCATTGATGTTGCTCAGGTTGGTTCTTCTAACTGGAGTTTCCTGACTCGAAATTACGGGGCAGTATGGGACACCAGTAGGGTTCCGACTGGAGCGCTGCAATTCCGGTTCGTGGTGACTGGCGGGTTCGATGGAAAGATGGTTTGGGCAAAGAATGTGCTTCCTGCTGACTGGAAGCCTAGGATGGTATATGACACAAAGGTTCAAATCAGTGATATTGCACAGGAGGGTTGCTCTCCGTGTGATGATGGGATTTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 ko05225 map00561 map01100 map04714 map04723 map04923 map05225
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

280

Amino Acids

30.77

Weight (kDa)

8.89

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 78 - 153 1.2e-10 Lytic transglycolase
Expansin_C PF01357 167 - 248 8e-20 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
Acc65I GGTACC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 466
AciI CCGC 2 cut(s) 162, 702
AcoI YGGCCR 1 cut(s) 396
AdeI CACNNNGTG 1 cut(s) 36
AfaI GTAC 2 cut(s) 313, 468
AfeI AGCGCT 1 cut(s) 675
AfiI CCNNNNNNNGG 1 cut(s) 691
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 3 cut(s) 246, 433, 785
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
AluBI AGCT 4 cut(s) 146, 203, 263, 389
AluI AGCT 4 cut(s) 146, 203, 263, 389
Alw26I GTCTC 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 675
AoxI GGCC 2 cut(s) 396, 418
ApeKI GCWGC 6 cut(s) 143, 164, 230, 233, 381, 676
Asp718I GGTACC 1 cut(s) 466
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 706
AvrII CCTAGG 1 cut(s) 758
BalI TGGCCA 1 cut(s) 398
BanI GGYRCC 1 cut(s) 466
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbvI GCAGC 6 cut(s) 151, 155, 217, 220, 393, 663
BccI CCATC 5 cut(s) 251, 704, 712, 757, 821
BciT130I CCWGG 1 cut(s) 422
BclI TGATCA 2 cut(s) 45, 333
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 327, 759
BfoI RGCGCY 1 cut(s) 677
BisI GCNGC 7 cut(s) 144, 162, 165, 231, 234, 382, 677
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 7 cut(s) 145, 163, 166, 232, 235, 383, 678
Bme1390I CCNGG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 468, 663
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 797, 829
BpmI CTGGAG 2 cut(s) 634, 690
Bpu10I CCTNAGC 1 cut(s) 594
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 2 cut(s) 44, 348
BsaJI CCNNGG 4 cut(s) 138, 399, 556, 758
BsaWI WCCGGW 1 cut(s) 684
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse1I ACTGG 5 cut(s) 617, 654, 673, 703, 755
Bse8I GATNNNNATC 2 cut(s) 44, 348
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 4 cut(s) 138, 399, 556, 758
BseGI GGATG 2 cut(s) 454, 768
BseJI GATNNNNATC 2 cut(s) 44, 348
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 5 cut(s) 617, 654, 673, 703, 755
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 6 cut(s) 151, 155, 217, 220, 393, 663
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 2 cut(s) 398, 420
BshNI GGYRCC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 685
BslFI GGGAC 3 cut(s) 222, 337, 662
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 222, 337, 662
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 398, 420
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 4 cut(s) 45, 118, 333, 343
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 2 cut(s) 162, 702
BspANI GGCC 2 cut(s) 398, 420
BspCNI CTCAG 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 468, 663
BspT107I GGYRCC 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 311
BsrI ACTGG 5 cut(s) 617, 654, 673, 703, 755
BssECI CCNNGG 4 cut(s) 138, 399, 556, 758
BssMI GATC 4 cut(s) 45, 118, 333, 343
BssT1I CCWWGG 4 cut(s) 138, 399, 556, 758
Bst2UI CCWGG 1 cut(s) 422
Bst6I CTCTTC 2 cut(s) 16, 92
BstAUI TGTACA 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 503
BstDEI CTNAG 5 cut(s) 212, 377, 493, 535, 594
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 454, 768
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 4 cut(s) 48, 121, 336, 346
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 4 cut(s) 45, 118, 333, 343
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstV1I GCAGC 6 cut(s) 151, 155, 217, 220, 393, 663
BsuRI GGCC 2 cut(s) 398, 420
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 454, 768
BtsIMutI CAGTG 1 cut(s) 796
CfoI GCGC 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 312, 467
CviAII CATG 5 cut(s) 276, 394, 400, 437, 471
CviQI GTAC 2 cut(s) 312, 467
DdeI CTNAG 5 cut(s) 212, 377, 493, 535, 594
DpnI GATC 4 cut(s) 47, 120, 335, 345
DpnII GATC 4 cut(s) 45, 118, 333, 343
DraIII CACNNNGTG 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 16, 92
EarI CTCTTC 2 cut(s) 16, 92
Eco130I CCWWGG 4 cut(s) 138, 399, 556, 758
Eco47III AGCGCT 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 4 cut(s) 138, 399, 556, 758
ErhI CCWWGG 4 cut(s) 138, 399, 556, 758
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 5 cut(s) 279, 397, 403, 440, 474
FaqI GGGAC 3 cut(s) 222, 337, 662
FatI CATG 5 cut(s) 275, 393, 399, 436, 470
FauI CCCGC 1 cut(s) 695
FbaI TGATCA 2 cut(s) 45, 333
Fnu4HI GCNGC 7 cut(s) 144, 162, 165, 231, 234, 382, 677
FokI GGATG 2 cut(s) 461, 775
Fsp4HI GCNGC 7 cut(s) 144, 162, 165, 231, 234, 382, 677
FspBI CTAG 2 cut(s) 327, 759
GlaI GCGC 1 cut(s) 675
GluI GCNGC 7 cut(s) 144, 162, 165, 231, 234, 382, 677
GsuI CTGGAG 2 cut(s) 634, 690
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 2 cut(s) 398, 420
HapII CCGG 1 cut(s) 685
HhaI GCGC 1 cut(s) 676
Hin1II CATG 5 cut(s) 279, 397, 403, 440, 474
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HinfI GANTC 3 cut(s) 40, 512, 625
HpaII CCGG 1 cut(s) 685
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 4 cut(s) 45, 285, 567, 666
Hpy188III TCNNGA 1 cut(s) 622
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 6 cut(s) 78, 130, 167, 302, 679, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 5 cut(s) 212, 377, 493, 535, 594
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 5 cut(s) 279, 397, 403, 440, 474
HspAI GCGC 1 cut(s) 674
KpnI GGTACC 1 cut(s) 470
Ksp22I TGATCA 2 cut(s) 45, 333
Kzo9I GATC 4 cut(s) 45, 118, 333, 343
LmnI GCTCC 2 cut(s) 260, 671
Lsp1109I GCAGC 6 cut(s) 151, 155, 217, 220, 393, 663
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 327, 759
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 694
MalI GATC 4 cut(s) 47, 120, 335, 345
MboI GATC 4 cut(s) 45, 118, 333, 343
MboII GAAGA 5 cut(s) 3, 79, 165, 521, 597
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 4 cut(s) 246, 441, 631, 680
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 1 cut(s) 689
MnlI CCTC 3 cut(s) 95, 112, 799
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 398
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 685
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 395
NcoI CCATGG 1 cut(s) 399
NdeII GATC 4 cut(s) 45, 118, 333, 343
NlaIII CATG 5 cut(s) 279, 397, 403, 440, 474
NlaIV GGNNCC 2 cut(s) 468, 663
NmuCI GTSAC 1 cut(s) 694
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 40, 512
PkrI GCNGC 7 cut(s) 145, 163, 166, 232, 235, 383, 678
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
Ppu21I YACGTR 1 cut(s) 503
PsiI TTATAA 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 468, 663
PspPI GGNCC 1 cut(s) 418
RsaI GTAC 2 cut(s) 313, 468
RsaNI GTAC 2 cut(s) 312, 467
RseI CAYNNNNRTG 1 cut(s) 398
SatI GCNGC 7 cut(s) 144, 162, 165, 231, 234, 382, 677
Sau3AI GATC 4 cut(s) 45, 118, 333, 343
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 1 cut(s) 422
SetI ASST 9 cut(s) 148, 205, 228, 265, 391, 505, 562, 600, 783
SfaNI GCATC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 4 cut(s) 246, 441, 631, 680
SsiI CCGC 2 cut(s) 162, 702
SspMI CTAG 2 cut(s) 327, 759
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 4 cut(s) 138, 399, 556, 758
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 628, 708
TasI AATT 4 cut(s) 246, 441, 631, 680
TatI WGTACW 1 cut(s) 311
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 40, 512
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 6 cut(s) 143, 164, 230, 233, 381, 676
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 3 cut(s) 9, 264, 382
TspGWI ACGGA 1 cut(s) 807
TspRI CASTG 1 cut(s) 796
XmaJI CCTAGG 1 cut(s) 758
XspI CTAG 2 cut(s) 327, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.