mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G48110 |
| fragaria_vesca | FvH4_2g23980 FvH4_2g23980 |
| malus_domestica | MD03G1269000.v1.1 MD11G1289800.v1.1 |
| prunus_persica | Prupe.8G245000_v2.0.a1 |
| pyrus_communis | pycom03g21480 pycom11g25720 |
| rosa_chinensis | RchiOBHm_Chr6g0291641 |
| rosa_laevigata | RLG00000012100 |
| rosa_multiflora | Rmu_co8449785.1_g000001 Rmu_sc0002226.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00175900 |
| rosa_rugosa | Rorug06G0220600 |
| rosa_samantha | Rh6AG333200 Rh6BG340000 Rh6CG346300 Rh6DG333500 |
| rosa_wichuraiana | Rw6G029020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 118, 3385 |
| AbsI | CCTCGAGG | 1 cut(s) | 753 |
| Acc36I | ACCTGC | 2 cut(s) | 2407, 3259 |
| Acc65I | GGTACC | 1 cut(s) | 2196 |
| AccB1I | GGYRCC | 1 cut(s) | 2196 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 492, 2702 |
| AccI | GTMKAC | 1 cut(s) | 1222 |
| AccII | CGCG | 1 cut(s) | 119 |
| AccIII | TCCGGA | 1 cut(s) | 145 |
| AciI | CCGC | 7 cut(s) | 83, 306, 1081, 1414, 2420, 2714, 3768 |
| AcoI | YGGCCR | 3 cut(s) | 563, 3046, 3533 |
| AcsI | RAATTY | 7 cut(s) | 397, 604, 680, 761, 1528, 2626, 3078 |
| AcuI | CTGAAG | 3 cut(s) | 83, 1068, 2322 |
| AdeI | CACNNNGTG | 1 cut(s) | 1831 |
| AfaI | GTAC | 8 cut(s) | 934, 1293, 1580, 2198, 2685, 2799, 3107, 3257 |
| AfeI | AGCGCT | 3 cut(s) | 883, 2789, 2891 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 492, 520, 1067, 2030, 2339, 2702, 3355, 3361, 3582 |
| AflIII | ACRYGT | 1 cut(s) | 3295 |
| AgeI | ACCGGT | 1 cut(s) | 899 |
| AgsI | TTSAA | 6 cut(s) | 890, 1571, 2226, 2296, 3232, 3692 |
| AhlI | ACTAGT | 1 cut(s) | 2743 |
| AjiI | CACGTC | 2 cut(s) | 2120, 3296 |
| AjnI | CCWGG | 7 cut(s) | 63, 376, 2840, 3094, 3315, 3354, 3494 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3420, 3452 |
| Alw21I | GWGCWC | 4 cut(s) | 376, 2461, 3040, 3120 |
| Alw26I | GTCTC | 9 cut(s) | 32, 334, 781, 1491, 3168, 3286, 3371, 3697, 3803 |
| Alw44I | GTGCAC | 2 cut(s) | 3036, 3116 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2326, 2672, 2973, 3367 |
| Ama87I | CYCGRG | 2 cut(s) | 753, 2478 |
| Aor13HI | TCCGGA | 1 cut(s) | 145 |
| Aor51HI | AGCGCT | 3 cut(s) | 883, 2789, 2891 |
| AoxI | GGCC | 9 cut(s) | 563, 2032, 2609, 2811, 2843, 3046, 3346, 3533, 3769 |
| ApaI | GGGCCC | 1 cut(s) | 2036 |
| ApaLI | GTGCAC | 2 cut(s) | 3036, 3116 |
| ApoI | RAATTY | 7 cut(s) | 397, 604, 680, 761, 1528, 2626, 3078 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3233, 3265 |
| AseI | ATTAAT | 3 cut(s) | 1232, 1236, 1925 |
| AsiGI | ACCGGT | 1 cut(s) | 899 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2128 |
| Asp718I | GGTACC | 1 cut(s) | 2196 |
| AspLEI | GCGC | 4 cut(s) | 884, 1762, 2790, 2892 |
| AspS9I | GGNCC | 9 cut(s) | 148, 1070, 1834, 2032, 2033, 2807, 2844, 2874, 3060 |
| AsuC2I | CCSGG | 4 cut(s) | 456, 2027, 2479, 2480 |
| AsuHPI | GGTGA | 6 cut(s) | 160, 1268, 1785, 1982, 2381, 3580 |
| AsuII | TTCGAA | 2 cut(s) | 843, 2132 |
| AsuNHI | GCTAGC | 1 cut(s) | 878 |
| AvaI | CYCGRG | 2 cut(s) | 753, 2478 |
| AvaII | GGWCC | 6 cut(s) | 148, 1070, 1834, 2807, 2874, 3060 |
| BaeGI | GKGCMC | 4 cut(s) | 1080, 2036, 3040, 3120 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2180, 2213 |
| BalI | TGGCCA | 2 cut(s) | 565, 3048 |
| BamHI | GGATCC | 3 cut(s) | 79, 1361, 2155 |
| BanI | GGYRCC | 1 cut(s) | 2196 |
| BanII | GRGCYC | 2 cut(s) | 97, 2036 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2676, 2708 |
| BauI | CACGAG | 2 cut(s) | 2568, 3196 |
| BbsI | GAAGAC | 2 cut(s) | 472, 852 |
| Bbv12I | GWGCWC | 4 cut(s) | 376, 2461, 3040, 3120 |
| BceAI | ACGGC | 3 cut(s) | 1604, 1747, 2061 |
| BciT130I | CCWGG | 7 cut(s) | 65, 378, 2842, 3096, 3317, 3356, 3496 |
| BclI | TGATCA | 4 cut(s) | 1168, 1987, 2383, 3369 |
| BcnI | CCSGG | 4 cut(s) | 456, 2027, 2479, 2480 |
| BcoDI | GTCTC | 9 cut(s) | 32, 334, 781, 1491, 3168, 3286, 3371, 3697, 3803 |
| BcuI | ACTAGT | 1 cut(s) | 2743 |
| BfmI | CTRYAG | 4 cut(s) | 313, 870, 3016, 3792 |
| BfoI | RGCGCY | 3 cut(s) | 885, 2791, 2893 |
| BfuAI | ACCTGC | 2 cut(s) | 2407, 3259 |
| BglII | AGATCT | 2 cut(s) | 554, 2658 |
| BlpI | GCTNAGC | 1 cut(s) | 1558 |
| Bme18I | GGWCC | 6 cut(s) | 148, 1070, 1834, 2807, 2874, 3060 |
| BmeT110I | CYCGRG | 2 cut(s) | 753, 2478 |
| BmgBI | CACGTC | 2 cut(s) | 2120, 3296 |
| BmgT120I | GGNCC | 9 cut(s) | 148, 1070, 1834, 2032, 2033, 2807, 2844, 2874, 3060 |
| BmrI | ACTGGG | 2 cut(s) | 2249, 3605 |
| BmtI | GCTAGC | 1 cut(s) | 882 |
| BmuI | ACTGGG | 2 cut(s) | 2249, 3605 |
| BpiI | GAAGAC | 2 cut(s) | 472, 852 |
| BpmI | CTGGAG | 6 cut(s) | 1530, 1701, 2385, 2905, 2914, 3093 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2282, 3479 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1558 |
| Bpu14I | TTCGAA | 2 cut(s) | 843, 2132 |
| BpuEI | CTTGAG | 2 cut(s) | 320, 2375 |
| BpuMI | CCSGG | 4 cut(s) | 456, 2027, 2479, 2480 |
| Bsa29I | ATCGAT | 2 cut(s) | 405, 3125 |
| BsaAI | YACGTR | 2 cut(s) | 1902, 3628 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2144 |
| BsaI | GGTCTC | 1 cut(s) | 1491 |
| BsaWI | WCCGGW | 3 cut(s) | 145, 899, 3341 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2335, 2365, 3420, 3450 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 492, 520, 1067, 2030, 2339, 2702, 3355, 3361, 3582 |
| Bse118I | RCCGGY | 6 cut(s) | 899, 2199, 2521, 2809, 3664, 3764 |
| Bse1I | ACTGG | 8 cut(s) | 804, 1195, 1600, 1921, 2255, 2612, 2677, 3600 |
| Bse3DI | GCAATG | 5 cut(s) | 914, 1820, 3189, 3294, 3662 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2144 |
| BseAI | TCCGGA | 1 cut(s) | 145 |
| BseBI | CCWGG | 7 cut(s) | 65, 378, 2842, 3096, 3317, 3356, 3496 |
| BseCI | ATCGAT | 2 cut(s) | 405, 3125 |
| BseGI | GGATG | 5 cut(s) | 301, 509, 747, 862, 3691 |
| BseJI | GATNNNNATC | 1 cut(s) | 2144 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 492, 520, 1067, 2030, 2339, 2702, 3355, 3361, 3582 |
| BseMI | GCAATG | 5 cut(s) | 914, 1820, 3189, 3294, 3662 |
| BseMII | CTCAG | 5 cut(s) | 1961, 2040, 2980, 3470, 3710 |
| BseNI | ACTGG | 8 cut(s) | 804, 1195, 1600, 1921, 2255, 2612, 2677, 3600 |
| BseRI | GAGGAG | 8 cut(s) | 186, 323, 769, 771, 1497, 1921, 2954, 3499 |
| BseSI | GKGCMC | 4 cut(s) | 1080, 2036, 3040, 3120 |
| BseYI | CCCAGC | 1 cut(s) | 2042 |
| BsgI | GTGCAG | 3 cut(s) | 798, 2724, 3807 |
| Bsh1236I | CGCG | 1 cut(s) | 119 |
| BshFI | GGCC | 9 cut(s) | 565, 2034, 2611, 2813, 2845, 3048, 3348, 3535, 3771 |
| BshNI | GGYRCC | 1 cut(s) | 2196 |
| BshTI | ACCGGT | 1 cut(s) | 899 |
| BshVI | ATCGAT | 2 cut(s) | 405, 3125 |
| BsiHKAI | GWGCWC | 4 cut(s) | 376, 2461, 3040, 3120 |
| BsiHKCI | CYCGRG | 2 cut(s) | 753, 2478 |
| BslFI | GGGAC | 6 cut(s) | 227, 874, 1820, 2083, 3046, 3790 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 492, 520, 1067, 2030, 2339, 2702, 3355, 3361, 3582 |
| BsmAI | GTCTC | 9 cut(s) | 32, 334, 781, 1491, 3168, 3286, 3371, 3697, 3803 |
| BsmBI | CGTCTC | 1 cut(s) | 3286 |
| BsmFI | GGGAC | 6 cut(s) | 227, 874, 1820, 2083, 3046, 3790 |
| BsmI | GAATGC | 1 cut(s) | 347 |
| BsnI | GGCC | 9 cut(s) | 565, 2034, 2611, 2813, 2845, 3048, 3348, 3535, 3771 |
| Bso31I | GGTCTC | 1 cut(s) | 1491 |
| BsoBI | CYCGRG | 2 cut(s) | 753, 2478 |
| Bsp119I | TTCGAA | 2 cut(s) | 843, 2132 |
| Bsp120I | GGGCCC | 1 cut(s) | 2032 |
| Bsp1286I | GDGCHC | 7 cut(s) | 97, 376, 1080, 2036, 2461, 3040, 3120 |
| Bsp13I | TCCGGA | 1 cut(s) | 145 |
| Bsp1407I | TGTACA | 2 cut(s) | 1291, 3105 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1558 |
| Bsp19I | CCATGG | 2 cut(s) | 2538, 3049 |
| BspACI | CCGC | 7 cut(s) | 83, 306, 1081, 1414, 2420, 2714, 3768 |
| BspANI | GGCC | 9 cut(s) | 565, 2034, 2611, 2813, 2845, 3048, 3348, 3535, 3771 |
| BspCNI | CTCAG | 5 cut(s) | 1962, 2041, 2979, 3471, 3711 |
| BspDI | ATCGAT | 2 cut(s) | 405, 3125 |
| BspEI | TCCGGA | 1 cut(s) | 145 |
| BspFNI | CGCG | 1 cut(s) | 119 |
| BspMAI | CTGCAG | 2 cut(s) | 874, 3020 |
| BspMI | ACCTGC | 2 cut(s) | 2407, 3259 |
| BspOI | GCTAGC | 1 cut(s) | 882 |
| BspQI | GCTCTTC | 2 cut(s) | 102, 3179 |
| BspT104I | TTCGAA | 2 cut(s) | 843, 2132 |
| BspT107I | GGYRCC | 1 cut(s) | 2196 |
| BspTNI | GGTCTC | 1 cut(s) | 1491 |
| BsrDI | GCAATG | 5 cut(s) | 914, 1820, 3189, 3294, 3662 |
| BsrFI | RCCGGY | 6 cut(s) | 899, 2199, 2521, 2809, 3664, 3764 |
| BsrGI | TGTACA | 2 cut(s) | 1291, 3105 |
| BsrI | ACTGG | 8 cut(s) | 804, 1195, 1600, 1921, 2255, 2612, 2677, 3600 |
| BssAI | RCCGGY | 6 cut(s) | 899, 2199, 2521, 2809, 3664, 3764 |
| BssSI | CACGAG | 2 cut(s) | 2568, 3196 |
| BssT1I | CCWWGG | 9 cut(s) | 275, 2538, 2687, 2989, 3043, 3049, 3536, 3576, 3772 |
| Bst2BI | CACGAG | 2 cut(s) | 2568, 3196 |
| Bst2UI | CCWGG | 7 cut(s) | 65, 378, 2842, 3096, 3317, 3356, 3496 |
| Bst4CI | ACNGT | 5 cut(s) | 1296, 1518, 2193, 2929, 3387 |
| Bst6I | CTCTTC | 4 cut(s) | 102, 608, 3171, 3179 |
| BstAUI | TGTACA | 2 cut(s) | 1291, 3105 |
| BstBAI | YACGTR | 2 cut(s) | 1902, 3628 |
| BstBI | TTCGAA | 2 cut(s) | 843, 2132 |
| BstDSI | CCRYGG | 3 cut(s) | 1620, 2538, 3049 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 518, 3359 |
| BstF5I | GGATG | 5 cut(s) | 301, 509, 747, 862, 3691 |
| BstFNI | CGCG | 1 cut(s) | 119 |
| BstH2I | RGCGCY | 3 cut(s) | 885, 2791, 2893 |
| BstHHI | GCGC | 4 cut(s) | 884, 1762, 2790, 2892 |
| BstMAI | GTCTC | 9 cut(s) | 32, 334, 781, 1491, 3168, 3286, 3371, 3697, 3803 |
| BstNI | CCWGG | 7 cut(s) | 65, 378, 2842, 3096, 3317, 3356, 3496 |
| BstNSI | RCATGY | 3 cut(s) | 347, 1679, 2854 |
| BstSFI | CTRYAG | 4 cut(s) | 313, 870, 3016, 3792 |
| BstSLI | GKGCMC | 4 cut(s) | 1080, 2036, 3040, 3120 |
| BstUI | CGCG | 1 cut(s) | 119 |
| BstV2I | GAAGAC | 2 cut(s) | 472, 852 |
| BstX2I | RGATCY | 7 cut(s) | 79, 554, 1057, 1361, 2155, 2658, 3336 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2167, 3056 |
| BstYI | RGATCY | 7 cut(s) | 79, 554, 1057, 1361, 2155, 2658, 3336 |
| Bsu15I | ATCGAT | 2 cut(s) | 405, 3125 |
| BsuRI | GGCC | 9 cut(s) | 565, 2034, 2611, 2813, 2845, 3048, 3348, 3535, 3771 |
| BsuTUI | ATCGAT | 2 cut(s) | 405, 3125 |
| BtgI | CCRYGG | 3 cut(s) | 1620, 2538, 3049 |
| BtgZI | GCGATG | 1 cut(s) | 2850 |
| BtrI | CACGTC | 2 cut(s) | 2120, 3296 |
| BtsCI | GGATG | 5 cut(s) | 301, 509, 747, 862, 3691 |
| BtsI | GCAGTG | 3 cut(s) | 1950, 3490, 3731 |
| BveI | ACCTGC | 2 cut(s) | 2407, 3259 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2326, 2672, 2973, 3367 |
| CfoI | GCGC | 4 cut(s) | 884, 1762, 2790, 2892 |
| Cfr10I | RCCGGY | 6 cut(s) | 899, 2199, 2521, 2809, 3664, 3764 |
| Cfr13I | GGNCC | 9 cut(s) | 148, 1070, 1834, 2032, 2033, 2807, 2844, 2874, 3060 |
| Cfr9I | CCCGGG | 1 cut(s) | 2478 |
| ClaI | ATCGAT | 2 cut(s) | 405, 3125 |
| CseI | GACGC | 1 cut(s) | 108 |
| CsiI | ACCWGGT | 1 cut(s) | 3354 |
| Csp6I | GTAC | 8 cut(s) | 933, 1292, 1579, 2197, 2684, 2798, 3106, 3256 |
| CspAI | ACCGGT | 1 cut(s) | 899 |
| CviQI | GTAC | 8 cut(s) | 933, 1292, 1579, 2197, 2684, 2798, 3106, 3256 |
| DraIII | CACNNNGTG | 1 cut(s) | 1831 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 118, 3385 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 118, 3385 |
| EaeI | YGGCCR | 3 cut(s) | 563, 3046, 3533 |
| Eam1104I | CTCTTC | 4 cut(s) | 102, 608, 3171, 3179 |
| EarI | CTCTTC | 4 cut(s) | 102, 608, 3171, 3179 |
| Eco130I | CCWWGG | 9 cut(s) | 275, 2538, 2687, 2989, 3043, 3049, 3536, 3576, 3772 |
| Eco24I | GRGCYC | 2 cut(s) | 97, 2036 |
| Eco31I | GGTCTC | 1 cut(s) | 1491 |
| Eco32I | GATATC | 6 cut(s) | 383, 412, 1791, 2146, 2410, 3591 |
| Eco47I | GGWCC | 6 cut(s) | 148, 1070, 1834, 2807, 2874, 3060 |
| Eco47III | AGCGCT | 3 cut(s) | 883, 2789, 2891 |
| Eco57I | CTGAAG | 3 cut(s) | 83, 1068, 2322 |
| Eco88I | CYCGRG | 2 cut(s) | 753, 2478 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 518, 3359 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1070, 2033, 3060 |
| EcoRI | GAATTC | 1 cut(s) | 397 |
| EcoRII | CCWGG | 7 cut(s) | 63, 376, 2840, 3094, 3315, 3354, 3494 |
| EcoRV | GATATC | 6 cut(s) | 383, 412, 1791, 2146, 2410, 3591 |
| EcoT14I | CCWWGG | 9 cut(s) | 275, 2538, 2687, 2989, 3043, 3049, 3536, 3576, 3772 |
| EcoT22I | ATGCAT | 3 cut(s) | 349, 511, 1029 |
| EcoT38I | GRGCYC | 2 cut(s) | 97, 2036 |
| ErhI | CCWWGG | 9 cut(s) | 275, 2538, 2687, 2989, 3043, 3049, 3536, 3576, 3772 |
| Esp3I | CGTCTC | 1 cut(s) | 3286 |
| FaqI | GGGAC | 6 cut(s) | 227, 874, 1820, 2083, 3046, 3790 |
| FauI | CCCGC | 2 cut(s) | 313, 1088 |
| FauNDI | CATATG | 1 cut(s) | 1029 |
| FbaI | TGATCA | 4 cut(s) | 1168, 1987, 2383, 3369 |
| FblI | GTMKAC | 1 cut(s) | 1222 |
| FokI | GGATG | 5 cut(s) | 288, 496, 734, 869, 3698 |
| FriOI | GRGCYC | 2 cut(s) | 97, 2036 |
| GlaI | GCGC | 4 cut(s) | 883, 1761, 2789, 2891 |
| GsaI | CCCAGC | 1 cut(s) | 2046 |
| GsuI | CTGGAG | 6 cut(s) | 1530, 1701, 2385, 2905, 2914, 3093 |
| HaeII | RGCGCY | 3 cut(s) | 885, 2791, 2893 |
| HaeIII | GGCC | 9 cut(s) | 565, 2034, 2611, 2813, 2845, 3048, 3348, 3535, 3771 |
| HgaI | GACGC | 1 cut(s) | 108 |
| HhaI | GCGC | 4 cut(s) | 884, 1762, 2790, 2892 |
| Hin6I | GCGC | 4 cut(s) | 882, 1760, 2788, 2890 |
| HinP1I | GCGC | 4 cut(s) | 882, 1760, 2788, 2890 |
| HincII | GTYRAC | 3 cut(s) | 1223, 1275, 2680 |
| HindII | GTYRAC | 3 cut(s) | 1223, 1275, 2680 |
| HindIII | AAGCTT | 5 cut(s) | 209, 296, 1267, 2768, 3621 |
| HphI | GGTGA | 6 cut(s) | 160, 1268, 1785, 1982, 2381, 3580 |
| Hpy99I | CGWCG | 4 cut(s) | 13, 49, 2124, 3534 |
| HpyAV | CCTTC | 6 cut(s) | 146, 275, 518, 1492, 2293, 3575 |
| HpyCH4III | ACNGT | 5 cut(s) | 1296, 1518, 2193, 2929, 3387 |
| HpyCH4IV | ACGT | 9 cut(s) | 44, 75, 1901, 2007, 2119, 2682, 3295, 3529, 3627 |
| HpySE526I | ACGT | 9 cut(s) | 44, 75, 1901, 2007, 2119, 2682, 3295, 3529, 3627 |
| HspAI | GCGC | 4 cut(s) | 882, 1760, 2788, 2890 |
| KflI | GGGWCCC | 1 cut(s) | 3060 |
| Kpn2I | TCCGGA | 1 cut(s) | 145 |
| KpnI | GGTACC | 1 cut(s) | 2200 |
| KroI | GCCGGC | 3 cut(s) | 2521, 3664, 3764 |
| KroNI | GCCGGC | 3 cut(s) | 2523, 3666, 3766 |
| Ksp22I | TGATCA | 4 cut(s) | 1168, 1987, 2383, 3369 |
| LguI | GCTCTTC | 2 cut(s) | 102, 3179 |
| MabI | ACCWGGT | 1 cut(s) | 3354 |
| MaeII | ACGT | 9 cut(s) | 44, 75, 1901, 2007, 2119, 2682, 3295, 3529, 3627 |
| MflI | RGATCY | 7 cut(s) | 79, 554, 1057, 1361, 2155, 2658, 3336 |
| MhlI | GDGCHC | 7 cut(s) | 97, 376, 1080, 2036, 2461, 3040, 3120 |
| MlsI | TGGCCA | 2 cut(s) | 565, 3048 |
| MluNI | TGGCCA | 2 cut(s) | 565, 3048 |
| MlyI | GAGTC | 5 cut(s) | 34, 1900, 2369, 2813, 3500 |
| MmeI | TCCRAC | 3 cut(s) | 43, 1014, 1640 |
| Mox20I | TGGCCA | 2 cut(s) | 565, 3048 |
| Mph1103I | ATGCAT | 3 cut(s) | 349, 511, 1029 |
| MroI | TCCGGA | 1 cut(s) | 145 |
| MroNI | GCCGGC | 3 cut(s) | 2521, 3664, 3764 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2128 |
| MscI | TGGCCA | 2 cut(s) | 565, 3048 |
| MseI | TTAA | 5 cut(s) | 1232, 1236, 1770, 1925, 2499 |
| MslI | CAYNNNNRTG | 5 cut(s) | 656, 1028, 2165, 2869, 3113 |
| Msp20I | TGGCCA | 2 cut(s) | 565, 3048 |
| MspA1I | CMGCKG | 2 cut(s) | 1721, 3089 |
| Mva1269I | GAATGC | 1 cut(s) | 347 |
| MvaI | CCWGG | 7 cut(s) | 65, 378, 2842, 3096, 3317, 3356, 3496 |
| MvnI | CGCG | 1 cut(s) | 119 |
| NaeI | GCCGGC | 3 cut(s) | 2523, 3666, 3766 |
| NciI | CCSGG | 4 cut(s) | 456, 2027, 2479, 2480 |
| NcoI | CCATGG | 2 cut(s) | 2538, 3049 |
| NdeI | CATATG | 1 cut(s) | 1029 |
| NgoMIV | GCCGGC | 3 cut(s) | 2521, 3664, 3764 |
| NheI | GCTAGC | 1 cut(s) | 878 |
| NmuCI | GTSAC | 6 cut(s) | 166, 697, 1114, 2322, 2860, 3628 |
| NsiI | ATGCAT | 3 cut(s) | 349, 511, 1029 |
| NspI | RCATGY | 3 cut(s) | 347, 1679, 2854 |
| NspV | TTCGAA | 2 cut(s) | 843, 2132 |
| PacI | TTAATTAA | 1 cut(s) | 1236 |
| PaeI | GCATGC | 1 cut(s) | 2854 |
| PaeR7I | CTCGAG | 1 cut(s) | 753 |
| PasI | CCCWGGG | 1 cut(s) | 3316 |
| PciSI | GCTCTTC | 2 cut(s) | 102, 3179 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2116 |
| PctI | GAATGC | 1 cut(s) | 347 |
| PdiI | GCCGGC | 3 cut(s) | 2523, 3666, 3766 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2128 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 492, 2702 |
| PinAI | ACCGGT | 1 cut(s) | 899 |
| PleI | GAGTC | 5 cut(s) | 33, 1900, 2369, 2813, 3500 |
| PpsI | GAGTC | 5 cut(s) | 33, 1900, 2369, 2813, 3500 |
| Ppu21I | YACGTR | 2 cut(s) | 1902, 3628 |
| PpuMI | RGGWCCY | 2 cut(s) | 1070, 3060 |
| PshBI | ATTAAT | 3 cut(s) | 1232, 1236, 1925 |
| Psp5II | RGGWCCY | 2 cut(s) | 1070, 3060 |
| Psp6I | CCWGG | 7 cut(s) | 63, 376, 2840, 3094, 3315, 3354, 3494 |
| PspFI | CCCAGC | 1 cut(s) | 2042 |
| PspGI | CCWGG | 7 cut(s) | 63, 376, 2840, 3094, 3315, 3354, 3494 |
| PspOMI | GGGCCC | 1 cut(s) | 2032 |
| PspPI | GGNCC | 9 cut(s) | 148, 1070, 1834, 2032, 2033, 2807, 2844, 2874, 3060 |
| PspPPI | RGGWCCY | 2 cut(s) | 1070, 3060 |
| PspXI | VCTCGAGB | 1 cut(s) | 753 |
| PstI | CTGCAG | 2 cut(s) | 874, 3020 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2326, 2672, 2973, 3367 |
| PsuI | RGATCY | 7 cut(s) | 79, 554, 1057, 1361, 2155, 2658, 3336 |
| PvuII | CAGCTG | 2 cut(s) | 1721, 3089 |
| RsaI | GTAC | 8 cut(s) | 934, 1293, 1580, 2198, 2685, 2799, 3107, 3257 |
| RsaNI | GTAC | 8 cut(s) | 933, 1292, 1579, 2197, 2684, 2798, 3106, 3256 |
| RseI | CAYNNNNRTG | 5 cut(s) | 656, 1028, 2165, 2869, 3113 |
| SalI | GTCGAC | 1 cut(s) | 1221 |
| SapI | GCTCTTC | 2 cut(s) | 102, 3179 |
| SaqAI | TTAA | 5 cut(s) | 1232, 1236, 1770, 1925, 2499 |
| Sau96I | GGNCC | 9 cut(s) | 148, 1070, 1834, 2032, 2033, 2807, 2844, 2874, 3060 |
| SchI | GAGTC | 5 cut(s) | 34, 1900, 2369, 2813, 3500 |
| SduI | GDGCHC | 7 cut(s) | 97, 376, 1080, 2036, 2461, 3040, 3120 |
| SexAI | ACCWGGT | 1 cut(s) | 3354 |
| SfcI | CTRYAG | 4 cut(s) | 313, 870, 3016, 3792 |
| Sfr274I | CTCGAG | 1 cut(s) | 753 |
| SfuI | TTCGAA | 2 cut(s) | 843, 2132 |
| SinI | GGWCC | 6 cut(s) | 148, 1070, 1834, 2807, 2874, 3060 |
| SlaI | CTCGAG | 1 cut(s) | 753 |
| SmaI | CCCGGG | 1 cut(s) | 2480 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 656, 1028, 2165, 2869, 3113 |
| SmlI | CTYRAG | 3 cut(s) | 335, 753, 2390 |
| SmoI | CTYRAG | 3 cut(s) | 335, 753, 2390 |
| SpeI | ACTAGT | 1 cut(s) | 2743 |
| SphI | GCATGC | 1 cut(s) | 2854 |
| SsiI | CCGC | 7 cut(s) | 83, 306, 1081, 1414, 2420, 2714, 3768 |
| SspI | AATATT | 3 cut(s) | 238, 1041, 1138 |
| StyI | CCWWGG | 9 cut(s) | 275, 2538, 2687, 2989, 3043, 3049, 3536, 3576, 3772 |
| TaaI | ACNGT | 5 cut(s) | 1296, 1518, 2193, 2929, 3387 |
| TaiI | ACGT | 9 cut(s) | 47, 78, 1904, 2010, 2122, 2685, 3298, 3532, 3630 |
| TatI | WGTACW | 4 cut(s) | 932, 1291, 2797, 3105 |
| TauI | GCSGC | 3 cut(s) | 2423, 2717, 3771 |
| Tru1I | TTAA | 5 cut(s) | 1232, 1236, 1770, 1925, 2499 |
| Tru9I | TTAA | 5 cut(s) | 1232, 1236, 1770, 1925, 2499 |
| TseFI | GTSAC | 6 cut(s) | 166, 697, 1114, 2322, 2860, 3628 |
| Tsp45I | GTSAC | 6 cut(s) | 166, 697, 1114, 2322, 2860, 3628 |
| TspGWI | ACGGA | 4 cut(s) | 220, 1288, 2613, 3423 |
| TspMI | CCCGGG | 1 cut(s) | 2478 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 492, 2702 |
| VneI | GTGCAC | 2 cut(s) | 3036, 3116 |
| VpaK11BI | GGWCC | 6 cut(s) | 148, 1070, 1834, 2807, 2874, 3060 |
| VspI | ATTAAT | 3 cut(s) | 1232, 1236, 1925 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 518, 3359 |
| XapI | RAATTY | 7 cut(s) | 397, 604, 680, 761, 1528, 2626, 3078 |
| XceI | RCATGY | 3 cut(s) | 347, 1679, 2854 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1194, 1899, 3543 |
| XhoI | CTCGAG | 1 cut(s) | 753 |
| XmaI | CCCGGG | 1 cut(s) | 2478 |
| XmiI | GTMKAC | 1 cut(s) | 1222 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2128 |
| Zsp2I | ATGCAT | 3 cut(s) | 349, 511, 1029 |