mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G48110 |
| fragaria_vesca | FvH4_2g23980 FvH4_2g23980 |
| malus_domestica | MD03G1269000.v1.1 MD11G1289800.v1.1 |
| prunus_persica | Prupe.8G245000_v2.0.a1 |
| pyrus_communis | pycom03g21480 pycom11g25720 |
| rosa_chinensis | RchiOBHm_Chr6g0291641 |
| rosa_laevigata | RLG00000012100 |
| rosa_multiflora | Rmu_co8449785.1_g000001 Rmu_sc0002226.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00175900 |
| rosa_rugosa | Rorug06G0220600 |
| rosa_samantha | Rh6AG333200 Rh6BG340000 Rh6CG346300 Rh6DG333500 |
| rosa_wichuraiana | Rw6G029020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1877, 2324, 2949 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 390 |
| Acc36I | ACCTGC | 1 cut(s) | 1208 |
| Acc65I | GGTACC | 1 cut(s) | 2379 |
| AccB1I | GGYRCC | 3 cut(s) | 2379, 2578, 3215 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 213 |
| AccBSI | CCGCTC | 2 cut(s) | 71, 94 |
| AccI | GTMKAC | 2 cut(s) | 575, 868 |
| AccII | CGCG | 4 cut(s) | 164, 1335, 3192, 3458 |
| AclWI | GGATC | 9 cut(s) | 1033, 1160, 1173, 1299, 2298, 2361, 3266, 3485, 3597 |
| AcoI | YGGCCR | 9 cut(s) | 132, 1589, 1639, 1651, 2792, 3026, 3226, 3439, 3716 |
| AcsI | RAATTY | 7 cut(s) | 742, 1879, 2318, 2809, 3001, 3279, 3743 |
| AcuI | CTGAAG | 4 cut(s) | 2319, 2505, 2702, 2763 |
| AcvI | CACGTG | 3 cut(s) | 202, 213, 2191 |
| AcyI | GRCGYC | 1 cut(s) | 3698 |
| AdeI | CACNNNGTG | 1 cut(s) | 967 |
| AfaI | GTAC | 7 cut(s) | 18, 1297, 1445, 1623, 1992, 2381, 2427 |
| AfeI | AGCGCT | 2 cut(s) | 2893, 3074 |
| AflII | CTTAAG | 1 cut(s) | 344 |
| AflIII | ACRYGT | 3 cut(s) | 863, 2188, 3292 |
| AjiI | CACGTC | 2 cut(s) | 866, 1501 |
| AjnI | CCWGG | 9 cut(s) | 463, 578, 1321, 1591, 1636, 1648, 1660, 2428, 3441 |
| AleI | CACNNNNGTG | 1 cut(s) | 3126 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3305, 3337 |
| Alw21I | GWGCWC | 5 cut(s) | 54, 162, 1609, 1860, 3342 |
| Alw26I | GTCTC | 6 cut(s) | 181, 343, 939, 1370, 2939, 3360 |
| Alw44I | GTGCAC | 1 cut(s) | 1605 |
| AlwI | GGATC | 9 cut(s) | 1033, 1160, 1173, 1299, 2298, 2361, 3266, 3485, 3597 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1901, 3977 |
| Ama87I | CYCGRG | 4 cut(s) | 224, 879, 3173, 3728 |
| Aor51HI | AGCGCT | 2 cut(s) | 2893, 3074 |
| ApaI | GGGCCC | 1 cut(s) | 3061 |
| ApaLI | GTGCAC | 1 cut(s) | 1605 |
| ApoI | RAATTY | 7 cut(s) | 742, 1879, 2318, 2809, 3001, 3279, 3743 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2311, 2653 |
| Asp718I | GGTACC | 1 cut(s) | 2379 |
| AspLEI | GCGC | 7 cut(s) | 166, 2894, 3075, 3194, 3736, 3758, 3971 |
| AsuC2I | CCSGG | 2 cut(s) | 3276, 3817 |
| AsuHPI | GGTGA | 5 cut(s) | 52, 302, 1379, 1680, 3140 |
| AsuII | TTCGAA | 1 cut(s) | 2251 |
| AsuNHI | GCTAGC | 2 cut(s) | 3752, 3982 |
| AvaI | CYCGRG | 4 cut(s) | 224, 879, 3173, 3728 |
| AvaII | GGWCC | 6 cut(s) | 383, 1178, 2088, 2228, 3139, 3303 |
| AxyI | CCTNAGG | 1 cut(s) | 2272 |
| BaeGI | GKGCMC | 6 cut(s) | 207, 1609, 2644, 2977, 3061, 3220 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2363, 2396 |
| BalI | TGGCCA | 7 cut(s) | 1591, 1641, 1653, 2794, 3028, 3228, 3441 |
| BamHI | GGATCC | 1 cut(s) | 1165 |
| BanI | GGYRCC | 3 cut(s) | 2379, 2578, 3215 |
| BanII | GRGCYC | 2 cut(s) | 162, 3061 |
| BauI | CACGAG | 1 cut(s) | 3468 |
| BbrPI | CACGTG | 3 cut(s) | 202, 213, 2191 |
| BbsI | GAAGAC | 4 cut(s) | 918, 936, 1662, 2656 |
| Bbv12I | GWGCWC | 5 cut(s) | 54, 162, 1609, 1860, 3342 |
| BceAI | ACGGC | 3 cut(s) | 733, 917, 1544 |
| BciT130I | CCWGG | 9 cut(s) | 465, 580, 1323, 1593, 1638, 1650, 1662, 2430, 3443 |
| BciVI | GTATCC | 2 cut(s) | 1466, 3823 |
| BclI | TGATCA | 3 cut(s) | 1932, 2170, 3543 |
| BcnI | CCSGG | 2 cut(s) | 3276, 3817 |
| BcoDI | GTCTC | 6 cut(s) | 181, 343, 939, 1370, 2939, 3360 |
| BfmI | CTRYAG | 7 cut(s) | 315, 845, 1082, 1425, 1902, 1980, 2673 |
| BfoI | RGCGCY | 2 cut(s) | 2895, 3076 |
| BfrI | CTTAAG | 1 cut(s) | 344 |
| BfuAI | ACCTGC | 1 cut(s) | 1208 |
| BfuI | GTATCC | 2 cut(s) | 1466, 3823 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 140 |
| BlpI | GCTNAGC | 6 cut(s) | 29, 113, 1266, 1741, 3890, 3978 |
| BmcAI | AGTACT | 1 cut(s) | 1623 |
| Bme18I | GGWCC | 6 cut(s) | 383, 1178, 2088, 2228, 3139, 3303 |
| BmeT110I | CYCGRG | 4 cut(s) | 224, 879, 3173, 3728 |
| BmgBI | CACGTC | 2 cut(s) | 866, 1501 |
| BmrI | ACTGGG | 1 cut(s) | 3788 |
| BmtI | GCTAGC | 2 cut(s) | 3756, 3986 |
| BmuI | ACTGGG | 1 cut(s) | 3788 |
| BpiI | GAAGAC | 4 cut(s) | 918, 936, 1662, 2656 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3326, 3358 |
| BpmI | CTGGAG | 8 cut(s) | 38, 486, 816, 1305, 1878, 2880, 3097, 3630 |
| Bpu10I | CCTNAGC | 2 cut(s) | 72, 3902 |
| Bpu1102I | GCTNAGC | 6 cut(s) | 29, 113, 1266, 1741, 3890, 3978 |
| Bpu14I | TTCGAA | 1 cut(s) | 2251 |
| BpuEI | CTTGAG | 2 cut(s) | 2558, 3134 |
| BpuMI | CCSGG | 2 cut(s) | 3276, 3817 |
| BsaAI | YACGTR | 6 cut(s) | 202, 213, 1610, 1628, 2191, 3293 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2266 |
| BsaHI | GRCGYC | 1 cut(s) | 3698 |
| BsaI | GGTCTC | 2 cut(s) | 939, 1370 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3603, 3633 |
| Bse118I | RCCGGY | 2 cut(s) | 134, 3700 |
| Bse1I | ACTGG | 6 cut(s) | 1069, 1895, 2673, 2860, 3765, 3783 |
| Bse21I | CCTNAGG | 1 cut(s) | 2272 |
| Bse3DI | GCAATG | 3 cut(s) | 675, 3369, 3468 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2266 |
| BseBI | CCWGG | 9 cut(s) | 465, 580, 1323, 1593, 1638, 1650, 1662, 2430, 3443 |
| BseJI | GATNNNNATC | 1 cut(s) | 2266 |
| BseMI | GCAATG | 3 cut(s) | 675, 3369, 3468 |
| BseNI | ACTGG | 6 cut(s) | 1069, 1895, 2673, 2860, 3765, 3783 |
| BseRI | GAGGAG | 5 cut(s) | 86, 161, 1556, 1805, 3932 |
| BseSI | GKGCMC | 6 cut(s) | 207, 1609, 2644, 2977, 3061, 3220 |
| BseX3I | CGGCCG | 1 cut(s) | 132 |
| BseYI | CCCAGC | 3 cut(s) | 189, 435, 3628 |
| Bsh1236I | CGCG | 4 cut(s) | 164, 1335, 3192, 3458 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshNI | GGYRCC | 3 cut(s) | 2379, 2578, 3215 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 5 cut(s) | 54, 162, 1609, 1860, 3342 |
| BsiHKCI | CYCGRG | 4 cut(s) | 224, 879, 3173, 3728 |
| BsiSI | CCGG | 4 cut(s) | 135, 3276, 3701, 3816 |
| BslFI | GGGAC | 8 cut(s) | 56, 236, 823, 1169, 1643, 2213, 2446, 3682 |
| BsmAI | GTCTC | 6 cut(s) | 181, 343, 939, 1370, 2939, 3360 |
| BsmBI | CGTCTC | 1 cut(s) | 181 |
| BsmFI | GGGAC | 8 cut(s) | 56, 236, 823, 1169, 1643, 2213, 2446, 3682 |
| BsmI | GAATGC | 2 cut(s) | 890, 3998 |
| Bso31I | GGTCTC | 2 cut(s) | 939, 1370 |
| BsoBI | CYCGRG | 4 cut(s) | 224, 879, 3173, 3728 |
| Bsp119I | TTCGAA | 1 cut(s) | 2251 |
| Bsp120I | GGGCCC | 1 cut(s) | 3057 |
| Bsp1407I | TGTACA | 2 cut(s) | 1443, 1990 |
| Bsp1720I | GCTNAGC | 6 cut(s) | 29, 113, 1266, 1741, 3890, 3978 |
| Bsp19I | CCATGG | 6 cut(s) | 2286, 2349, 2644, 2721, 3229, 3963 |
| Bsp68I | TCGCGA | 1 cut(s) | 1335 |
| BspFNI | CGCG | 4 cut(s) | 164, 1335, 3192, 3458 |
| BspHI | TCATGA | 2 cut(s) | 607, 3324 |
| BspMAI | CTGCAG | 5 cut(s) | 319, 849, 1086, 1429, 1906 |
| BspMI | ACCTGC | 1 cut(s) | 1208 |
| BspOI | GCTAGC | 2 cut(s) | 3756, 3986 |
| BspPI | GGATC | 9 cut(s) | 1033, 1160, 1173, 1299, 2298, 2361, 3266, 3485, 3597 |
| BspT104I | TTCGAA | 1 cut(s) | 2251 |
| BspT107I | GGYRCC | 3 cut(s) | 2379, 2578, 3215 |
| BspTI | CTTAAG | 1 cut(s) | 344 |
| BspTNI | GGTCTC | 2 cut(s) | 939, 1370 |
| BsrBI | CCGCTC | 2 cut(s) | 71, 94 |
| BsrDI | GCAATG | 3 cut(s) | 675, 3369, 3468 |
| BsrFI | RCCGGY | 2 cut(s) | 134, 3700 |
| BsrGI | TGTACA | 2 cut(s) | 1443, 1990 |
| BsrI | ACTGG | 6 cut(s) | 1069, 1895, 2673, 2860, 3765, 3783 |
| BssAI | RCCGGY | 2 cut(s) | 134, 3700 |
| BssNI | GRCGYC | 1 cut(s) | 3698 |
| BssSI | CACGAG | 1 cut(s) | 3468 |
| Bst2BI | CACGAG | 1 cut(s) | 3468 |
| Bst2UI | CCWGG | 9 cut(s) | 465, 580, 1323, 1593, 1638, 1650, 1662, 2430, 3443 |
| Bst4CI | ACNGT | 8 cut(s) | 49, 241, 1462, 1990, 2212, 3112, 3200, 3561 |
| Bst6I | CTCTTC | 5 cut(s) | 620, 1251, 2302, 3327, 3878 |
| BstACI | GRCGYC | 1 cut(s) | 3698 |
| BstAFI | CTTAAG | 1 cut(s) | 344 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 665 |
| BstAUI | TGTACA | 2 cut(s) | 1443, 1990 |
| BstBAI | YACGTR | 6 cut(s) | 202, 213, 1610, 1628, 2191, 3293 |
| BstBI | TTCGAA | 1 cut(s) | 2251 |
| BstDSI | CCRYGG | 7 cut(s) | 2286, 2349, 2644, 2721, 3229, 3456, 3963 |
| BstEII | GGTNACC | 1 cut(s) | 1686 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 227, 2097 |
| BstFNI | CGCG | 4 cut(s) | 164, 1335, 3192, 3458 |
| BstH2I | RGCGCY | 2 cut(s) | 2895, 3076 |
| BstHHI | GCGC | 7 cut(s) | 166, 2894, 3075, 3194, 3736, 3758, 3971 |
| BstMAI | GTCTC | 6 cut(s) | 181, 343, 939, 1370, 2939, 3360 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstNI | CCWGG | 9 cut(s) | 465, 580, 1323, 1593, 1638, 1650, 1662, 2430, 3443 |
| BstNSI | RCATGY | 2 cut(s) | 1213, 3037 |
| BstPI | GGTNACC | 1 cut(s) | 1686 |
| BstSFI | CTRYAG | 7 cut(s) | 315, 845, 1082, 1425, 1902, 1980, 2673 |
| BstSLI | GKGCMC | 6 cut(s) | 207, 1609, 2644, 2977, 3061, 3220 |
| BstSNI | TACGTA | 1 cut(s) | 1628 |
| BstUI | CGCG | 4 cut(s) | 164, 1335, 3192, 3458 |
| BstV2I | GAAGAC | 4 cut(s) | 918, 936, 1662, 2656 |
| BstX2I | RGATCY | 2 cut(s) | 1165, 3258 |
| BstXI | CCANNNNNNTGG | 7 cut(s) | 443, 1649, 1661, 2350, 3125, 3236, 3251 |
| BstYI | RGATCY | 2 cut(s) | 1165, 3258 |
| BstZI | CGGCCG | 1 cut(s) | 132 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2272 |
| BsuI | GTATCC | 2 cut(s) | 1466, 3823 |
| BtgI | CCRYGG | 7 cut(s) | 2286, 2349, 2644, 2721, 3229, 3456, 3963 |
| BtrI | CACGTC | 2 cut(s) | 866, 1501 |
| BtsI | GCAGTG | 4 cut(s) | 1242, 2130, 3141, 3663 |
| BtsIMutI | CAGTG | 8 cut(s) | 1242, 2130, 2853, 2996, 3141, 3663, 3758, 3776 |
| BtuMI | TCGCGA | 1 cut(s) | 1335 |
| BveI | ACCTGC | 1 cut(s) | 1208 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1901, 3977 |
| CciI | TCATGA | 2 cut(s) | 607, 3324 |
| CfoI | GCGC | 7 cut(s) | 166, 2894, 3075, 3194, 3736, 3758, 3971 |
| Cfr10I | RCCGGY | 2 cut(s) | 134, 3700 |
| Cfr42I | CCGCGG | 1 cut(s) | 3459 |
| CpoI | CGGWCCG | 1 cut(s) | 3303 |
| CseI | GACGC | 3 cut(s) | 1319, 2532, 3706 |
| Csp6I | GTAC | 7 cut(s) | 17, 1296, 1444, 1622, 1991, 2380, 2426 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2842, 2877 |
| CspI | CGGWCCG | 1 cut(s) | 3303 |
| CviQI | GTAC | 7 cut(s) | 17, 1296, 1444, 1622, 1991, 2380, 2426 |
| DraIII | CACNNNGTG | 1 cut(s) | 967 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 390 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 390 |
| EaeI | YGGCCR | 9 cut(s) | 132, 1589, 1639, 1651, 2792, 3026, 3226, 3439, 3716 |
| EagI | CGGCCG | 1 cut(s) | 132 |
| Eam1104I | CTCTTC | 5 cut(s) | 620, 1251, 2302, 3327, 3878 |
| EarI | CTCTTC | 5 cut(s) | 620, 1251, 2302, 3327, 3878 |
| Ecl136II | GAGCTC | 1 cut(s) | 160 |
| EclXI | CGGCCG | 1 cut(s) | 132 |
| Eco105I | TACGTA | 1 cut(s) | 1628 |
| Eco147I | AGGCCT | 2 cut(s) | 233, 1455 |
| Eco24I | GRGCYC | 2 cut(s) | 162, 3061 |
| Eco31I | GGTCTC | 2 cut(s) | 939, 1370 |
| Eco32I | GATATC | 3 cut(s) | 1800, 2593, 3513 |
| Eco47I | GGWCC | 6 cut(s) | 383, 1178, 2088, 2228, 3139, 3303 |
| Eco47III | AGCGCT | 2 cut(s) | 2893, 3074 |
| Eco52I | CGGCCG | 1 cut(s) | 132 |
| Eco53kI | GAGCTC | 1 cut(s) | 160 |
| Eco57I | CTGAAG | 4 cut(s) | 2319, 2505, 2702, 2763 |
| Eco72I | CACGTG | 3 cut(s) | 202, 213, 2191 |
| Eco81I | CCTNAGG | 1 cut(s) | 2272 |
| Eco88I | CYCGRG | 4 cut(s) | 224, 879, 3173, 3728 |
| Eco91I | GGTNACC | 1 cut(s) | 1686 |
| EcoICRI | GAGCTC | 1 cut(s) | 160 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 227, 2097 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1178 |
| EcoO65I | GGTNACC | 1 cut(s) | 1686 |
| EcoRI | GAATTC | 2 cut(s) | 3001, 3279 |
| EcoRII | CCWGG | 9 cut(s) | 463, 578, 1321, 1591, 1636, 1648, 1660, 2428, 3441 |
| EcoRV | GATATC | 3 cut(s) | 1800, 2593, 3513 |
| EcoT22I | ATGCAT | 4 cut(s) | 520, 1117, 1211, 3035 |
| EcoT38I | GRGCYC | 2 cut(s) | 162, 3061 |
| Esp3I | CGTCTC | 1 cut(s) | 181 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3143, 3175 |
| FaqI | GGGAC | 8 cut(s) | 56, 236, 823, 1169, 1643, 2213, 2446, 3682 |
| FauI | CCCGC | 5 cut(s) | 99, 3197, 3659, 3795, 3944 |
| FauNDI | CATATG | 2 cut(s) | 500, 3808 |
| FbaI | TGATCA | 3 cut(s) | 1932, 2170, 3543 |
| FblI | GTMKAC | 2 cut(s) | 575, 868 |
| FriOI | GRGCYC | 2 cut(s) | 162, 3061 |
| GlaI | GCGC | 7 cut(s) | 165, 2893, 3074, 3193, 3735, 3757, 3970 |
| GsaI | CCCAGC | 3 cut(s) | 193, 439, 3632 |
| GsuI | CTGGAG | 8 cut(s) | 38, 486, 816, 1305, 1878, 2880, 3097, 3630 |
| HaeII | RGCGCY | 2 cut(s) | 2895, 3076 |
| HapII | CCGG | 4 cut(s) | 135, 3276, 3701, 3816 |
| HgaI | GACGC | 3 cut(s) | 1319, 2532, 3706 |
| HhaI | GCGC | 7 cut(s) | 166, 2894, 3075, 3194, 3736, 3758, 3971 |
| Hin1I | GRCGYC | 1 cut(s) | 3698 |
| Hin6I | GCGC | 7 cut(s) | 164, 2892, 3073, 3192, 3734, 3756, 3969 |
| HinP1I | GCGC | 7 cut(s) | 164, 2892, 3073, 3192, 3734, 3756, 3969 |
| HincII | GTYRAC | 2 cut(s) | 852, 869 |
| HindII | GTYRAC | 2 cut(s) | 852, 869 |
| HpaII | CCGG | 4 cut(s) | 135, 3276, 3701, 3816 |
| HphI | GGTGA | 5 cut(s) | 52, 302, 1379, 1680, 3140 |
| Hpy166II | GTNNAC | 9 cut(s) | 461, 576, 852, 869, 1607, 2666, 3096, 3403, 3688 |
| Hpy8I | GTNNAC | 9 cut(s) | 461, 576, 852, 869, 1607, 2666, 3096, 3403, 3688 |
| Hpy99I | CGWCG | 4 cut(s) | 158, 870, 1335, 2548 |
| HpyCH4III | ACNGT | 8 cut(s) | 49, 241, 1462, 1990, 2212, 3112, 3200, 3561 |
| HpyCH4IV | ACGT | 8 cut(s) | 201, 212, 865, 1500, 1609, 1627, 2190, 3292 |
| HpySE526I | ACGT | 8 cut(s) | 201, 212, 865, 1500, 1609, 1627, 2190, 3292 |
| Hsp92I | GRCGYC | 1 cut(s) | 3698 |
| HspAI | GCGC | 7 cut(s) | 164, 2892, 3073, 3192, 3734, 3756, 3969 |
| KpnI | GGTACC | 1 cut(s) | 2383 |
| KroI | GCCGGC | 2 cut(s) | 134, 3700 |
| KroNI | GCCGGC | 2 cut(s) | 136, 3702 |
| Ksp22I | TGATCA | 3 cut(s) | 1932, 2170, 3543 |
| KspI | CCGCGG | 1 cut(s) | 3459 |
| MaeII | ACGT | 8 cut(s) | 201, 212, 865, 1500, 1609, 1627, 2190, 3292 |
| MaeIII | GTNAC | 9 cut(s) | 507, 709, 750, 1237, 1686, 1807, 2746, 3080, 3694 |
| MbiI | CCGCTC | 2 cut(s) | 71, 94 |
| MfeI | CAATTG | 2 cut(s) | 374, 2817 |
| MflI | RGATCY | 2 cut(s) | 1165, 3258 |
| MlsI | TGGCCA | 7 cut(s) | 1591, 1641, 1653, 2794, 3028, 3228, 3441 |
| MluNI | TGGCCA | 7 cut(s) | 1591, 1641, 1653, 2794, 3028, 3228, 3441 |
| MlyI | GAGTC | 9 cut(s) | 845, 871, 1381, 2428, 2503, 2565, 2567, 3480, 3683 |
| Mox20I | TGGCCA | 7 cut(s) | 1591, 1641, 1653, 2794, 3028, 3228, 3441 |
| Mph1103I | ATGCAT | 4 cut(s) | 520, 1117, 1211, 3035 |
| MroNI | GCCGGC | 2 cut(s) | 134, 3700 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2311, 2653 |
| MscI | TGGCCA | 7 cut(s) | 1591, 1641, 1653, 2794, 3028, 3228, 3441 |
| MseI | TTAA | 8 cut(s) | 345, 618, 1092, 1343, 1710, 1953, 3350, 4003 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2348, 3123, 3126 |
| Msp20I | TGGCCA | 7 cut(s) | 1591, 1641, 1653, 2794, 3028, 3228, 3441 |
| MspA1I | CMGCKG | 8 cut(s) | 28, 439, 1270, 1360, 2033, 2741, 3458, 3977 |
| MspCI | CTTAAG | 1 cut(s) | 344 |
| MspI | CCGG | 4 cut(s) | 135, 3276, 3701, 3816 |
| MunI | CAATTG | 2 cut(s) | 374, 2817 |
| Mva1269I | GAATGC | 2 cut(s) | 890, 3998 |
| MvaI | CCWGG | 9 cut(s) | 465, 580, 1323, 1593, 1638, 1650, 1662, 2430, 3443 |
| MvnI | CGCG | 4 cut(s) | 164, 1335, 3192, 3458 |
| NaeI | GCCGGC | 2 cut(s) | 136, 3702 |
| NciI | CCSGG | 2 cut(s) | 3276, 3817 |
| NcoI | CCATGG | 6 cut(s) | 2286, 2349, 2644, 2721, 3229, 3963 |
| NdeI | CATATG | 2 cut(s) | 500, 3808 |
| NgoMIV | GCCGGC | 2 cut(s) | 134, 3700 |
| NheI | GCTAGC | 2 cut(s) | 3752, 3982 |
| NmeAIII | GCCGAG | 1 cut(s) | 110 |
| NmuCI | GTSAC | 5 cut(s) | 750, 1237, 1686, 3080, 3694 |
| NruI | TCGCGA | 1 cut(s) | 1335 |
| NsiI | ATGCAT | 4 cut(s) | 520, 1117, 1211, 3035 |
| NspI | RCATGY | 2 cut(s) | 1213, 3037 |
| NspV | TTCGAA | 1 cut(s) | 2251 |
| OliI | CACNNNNGTG | 1 cut(s) | 3126 |
| PaeI | GCATGC | 1 cut(s) | 3037 |
| PaeR7I | CTCGAG | 1 cut(s) | 224 |
| PagI | TCATGA | 2 cut(s) | 607, 3324 |
| PceI | AGGCCT | 2 cut(s) | 233, 1455 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2257 |
| PctI | GAATGC | 2 cut(s) | 890, 3998 |
| PdiI | GCCGGC | 2 cut(s) | 136, 3702 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2311, 2653 |
| PfeI | GAWTC | 4 cut(s) | 1481, 1561, 2295, 3605 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 213 |
| PfoI | TCCNGGA | 1 cut(s) | 1321 |
| PleI | GAGTC | 9 cut(s) | 844, 871, 1381, 2428, 2503, 2565, 2566, 3479, 3683 |
| PmaCI | CACGTG | 3 cut(s) | 202, 213, 2191 |
| PmlI | CACGTG | 3 cut(s) | 202, 213, 2191 |
| PpsI | GAGTC | 9 cut(s) | 844, 871, 1381, 2428, 2503, 2565, 2566, 3479, 3683 |
| Ppu21I | YACGTR | 6 cut(s) | 202, 213, 1610, 1628, 2191, 3293 |
| PpuMI | RGGWCCY | 1 cut(s) | 1178 |
| PsiI | TTATAA | 3 cut(s) | 1877, 2324, 2949 |
| Psp124BI | GAGCTC | 1 cut(s) | 162 |
| Psp5II | RGGWCCY | 1 cut(s) | 1178 |
| Psp6I | CCWGG | 9 cut(s) | 463, 578, 1321, 1591, 1636, 1648, 1660, 2428, 3441 |
| PspCI | CACGTG | 3 cut(s) | 202, 213, 2191 |
| PspEI | GGTNACC | 1 cut(s) | 1686 |
| PspFI | CCCAGC | 3 cut(s) | 189, 435, 3628 |
| PspGI | CCWGG | 9 cut(s) | 463, 578, 1321, 1591, 1636, 1648, 1660, 2428, 3441 |
| PspOMI | GGGCCC | 1 cut(s) | 3057 |
| PspPPI | RGGWCCY | 1 cut(s) | 1178 |
| PstI | CTGCAG | 5 cut(s) | 319, 849, 1086, 1429, 1906 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1901, 3977 |
| PsuI | RGATCY | 2 cut(s) | 1165, 3258 |
| PvuII | CAGCTG | 5 cut(s) | 439, 1270, 2033, 2741, 3977 |
| RruI | TCGCGA | 1 cut(s) | 1335 |
| RsaI | GTAC | 7 cut(s) | 18, 1297, 1445, 1623, 1992, 2381, 2427 |
| RsaNI | GTAC | 7 cut(s) | 17, 1296, 1444, 1622, 1991, 2380, 2426 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2348, 3123, 3126 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3303 |
| RsrII | CGGWCCG | 1 cut(s) | 3303 |
| SacI | GAGCTC | 1 cut(s) | 162 |
| SacII | CCGCGG | 1 cut(s) | 3459 |
| SalI | GTCGAC | 1 cut(s) | 867 |
| SaqAI | TTAA | 8 cut(s) | 345, 618, 1092, 1343, 1710, 1953, 3350, 4003 |
| ScaI | AGTACT | 1 cut(s) | 1623 |
| SchI | GAGTC | 9 cut(s) | 845, 871, 1381, 2428, 2503, 2565, 2567, 3480, 3683 |
| SfcI | CTRYAG | 7 cut(s) | 315, 845, 1082, 1425, 1902, 1980, 2673 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 140 |
| Sfr274I | CTCGAG | 1 cut(s) | 224 |
| Sfr303I | CCGCGG | 1 cut(s) | 3459 |
| SfuI | TTCGAA | 1 cut(s) | 2251 |
| SgrBI | CCGCGG | 1 cut(s) | 3459 |
| SinI | GGWCC | 6 cut(s) | 383, 1178, 2088, 2228, 3139, 3303 |
| SlaI | CTCGAG | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2348, 3123, 3126 |
| SmlI | CTYRAG | 4 cut(s) | 224, 344, 2573, 3149 |
| SmoI | CTYRAG | 4 cut(s) | 224, 344, 2573, 3149 |
| SnaBI | TACGTA | 1 cut(s) | 1628 |
| SphI | GCATGC | 1 cut(s) | 3037 |
| SseBI | AGGCCT | 2 cut(s) | 233, 1455 |
| SspI | AATATT | 1 cut(s) | 1246 |
| SstI | GAGCTC | 1 cut(s) | 162 |
| StuI | AGGCCT | 2 cut(s) | 233, 1455 |
| TaaI | ACNGT | 8 cut(s) | 49, 241, 1462, 1990, 2212, 3112, 3200, 3561 |
| TaiI | ACGT | 8 cut(s) | 204, 215, 868, 1503, 1612, 1630, 2193, 3295 |
| TaqII | GACCGA | 1 cut(s) | 3291 |
| TatI | WGTACW | 3 cut(s) | 1443, 1621, 1990 |
| TauI | GCSGC | 4 cut(s) | 3458, 3461, 3715, 3718 |
| TfiI | GAWTC | 4 cut(s) | 1481, 1561, 2295, 3605 |
| Tru1I | TTAA | 8 cut(s) | 345, 618, 1092, 1343, 1710, 1953, 3350, 4003 |
| Tru9I | TTAA | 8 cut(s) | 345, 618, 1092, 1343, 1710, 1953, 3350, 4003 |
| TscAI | CASTG | 8 cut(s) | 1242, 2130, 2860, 3003, 3141, 3663, 3765, 3783 |
| TseFI | GTSAC | 5 cut(s) | 750, 1237, 1686, 3080, 3694 |
| Tsp45I | GTSAC | 5 cut(s) | 750, 1237, 1686, 3080, 3694 |
| TspGWI | ACGGA | 7 cut(s) | 4, 142, 978, 2567, 3295, 3349, 3682 |
| TspRI | CASTG | 8 cut(s) | 1242, 2130, 2860, 3003, 3141, 3663, 3765, 3783 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 213 |
| Vha464I | CTTAAG | 1 cut(s) | 344 |
| VneI | GTGCAC | 1 cut(s) | 1605 |
| VpaK11BI | GGWCC | 6 cut(s) | 383, 1178, 2088, 2228, 3139, 3303 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 227, 2097 |
| XapI | RAATTY | 7 cut(s) | 742, 1879, 2318, 2809, 3001, 3279, 3743 |
| XbaI | TCTAGA | 1 cut(s) | 566 |
| XceI | RCATGY | 2 cut(s) | 1213, 3037 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3251, 3397, 3583 |
| XhoI | CTCGAG | 1 cut(s) | 224 |
| XmiI | GTMKAC | 2 cut(s) | 575, 868 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2311, 2653 |
| ZrmI | AGTACT | 1 cut(s) | 1623 |
| Zsp2I | ATGCAT | 4 cut(s) | 520, 1117, 1211, 3035 |