mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G48110 |
| fragaria_vesca | FvH4_2g23980 FvH4_2g23980 |
| malus_domestica | MD03G1269000.v1.1 MD11G1289800.v1.1 |
| prunus_persica | Prupe.8G245000_v2.0.a1 |
| pyrus_communis | pycom03g21480 pycom11g25720 |
| rosa_chinensis | RchiOBHm_Chr6g0291641 |
| rosa_laevigata | RLG00000012100 |
| rosa_multiflora | Rmu_co8449785.1_g000001 Rmu_sc0002226.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00175900 |
| rosa_rugosa | Rorug06G0220600 |
| rosa_samantha | Rh6AG333200 Rh6BG340000 Rh6CG346300 Rh6DG333500 |
| rosa_wichuraiana | Rw6G029020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2084, 2531 |
| AarI | CACCTGC | 1 cut(s) | 2078 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1618 |
| Acc16I | TGCGCA | 1 cut(s) | 1826 |
| Acc36I | ACCTGC | 3 cut(s) | 1427, 1580, 2078 |
| Acc65I | GGTACC | 1 cut(s) | 2586 |
| AccB1I | GGYRCC | 4 cut(s) | 67, 229, 2586, 3422 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3793 |
| AccBSI | CCGCTC | 2 cut(s) | 313, 1507 |
| AccI | GTMKAC | 2 cut(s) | 1087, 3894 |
| AciI | CCGC | 7 cut(s) | 224, 311, 351, 354, 1256, 1507, 3012 |
| AcoI | YGGCCR | 6 cut(s) | 1650, 1811, 1858, 2999, 3233, 3433 |
| AcsI | RAATTY | 9 cut(s) | 607, 1127, 2525, 3016, 3048, 3208, 3486, 3950, 3978 |
| AcuI | CTGAAG | 8 cut(s) | 86, 134, 890, 2094, 2526, 2712, 2970, 3558 |
| AcvI | CACGTG | 2 cut(s) | 421, 432 |
| AdeI | CACNNNGTG | 1 cut(s) | 2713 |
| AfaI | GTAC | 5 cut(s) | 237, 947, 2444, 2588, 2634 |
| AfeI | AGCGCT | 2 cut(s) | 3100, 3281 |
| AflII | CTTAAG | 2 cut(s) | 563, 3356 |
| AgeI | ACCGGT | 2 cut(s) | 35, 3062 |
| AhlI | ACTAGT | 2 cut(s) | 1262, 4189 |
| AjiI | CACGTC | 2 cut(s) | 956, 1085 |
| AjnI | CCWGG | 6 cut(s) | 682, 1813, 2635, 3481, 3884, 4137 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2407, 2439 |
| AleI | CACNNNNGTG | 1 cut(s) | 3333 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 972, 1004, 2262, 2294 |
| Alw21I | GWGCWC | 5 cut(s) | 381, 785, 1008, 2067, 3967 |
| Alw26I | GTCTC | 4 cut(s) | 400, 1899, 3146, 3916 |
| Alw44I | GTGCAC | 1 cut(s) | 3963 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 997, 2759, 4184 |
| Ama87I | CYCGRG | 2 cut(s) | 443, 1007 |
| Aor51HI | AGCGCT | 2 cut(s) | 3100, 3281 |
| ApaI | GGGCCC | 2 cut(s) | 325, 3268 |
| ApaLI | GTGCAC | 1 cut(s) | 3963 |
| ApoI | RAATTY | 9 cut(s) | 607, 1127, 2525, 3016, 3048, 3208, 3486, 3950, 3978 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4098, 4130 |
| AseI | ATTAAT | 2 cut(s) | 1311, 1883 |
| AsiGI | ACCGGT | 2 cut(s) | 35, 3062 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2518, 2860, 3543 |
| Asp718I | GGTACC | 1 cut(s) | 2586 |
| AspLEI | GCGC | 4 cut(s) | 1827, 3101, 3282, 3943 |
| AsuHPI | GGTGA | 9 cut(s) | 245, 271, 521, 1601, 2372, 2481, 2699, 3178, 3897 |
| AsuII | TTCGAA | 1 cut(s) | 2458 |
| AvaI | CYCGRG | 2 cut(s) | 443, 1007 |
| AvaII | GGWCC | 7 cut(s) | 268, 602, 824, 1397, 1510, 2435, 3197 |
| BaeGI | GKGCMC | 9 cut(s) | 234, 325, 363, 1015, 2851, 3184, 3268, 3427, 3967 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2570, 2603 |
| BalI | TGGCCA | 6 cut(s) | 1652, 1813, 1860, 3001, 3235, 3435 |
| BamHI | GGATCC | 2 cut(s) | 1151, 1384 |
| BanI | GGYRCC | 4 cut(s) | 67, 229, 2586, 3422 |
| BanII | GRGCYC | 4 cut(s) | 325, 381, 785, 3268 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 900, 932, 3336, 3368 |
| BauI | CACGAG | 1 cut(s) | 3675 |
| BbrPI | CACGTG | 2 cut(s) | 421, 432 |
| BbsI | GAAGAC | 7 cut(s) | 659, 1155, 1869, 2863, 3313, 3629, 4097 |
| Bbv12I | GWGCWC | 5 cut(s) | 381, 785, 1008, 2067, 3967 |
| BceAI | ACGGC | 3 cut(s) | 341, 352, 1121 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4002, 4036 |
| BciT130I | CCWGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| BciVI | GTATCC | 1 cut(s) | 1688 |
| BclI | TGATCA | 3 cut(s) | 1591, 2139, 3750 |
| BcoDI | GTCTC | 4 cut(s) | 400, 1899, 3146, 3916 |
| BcuI | ACTAGT | 2 cut(s) | 1262, 4189 |
| BfmI | CTRYAG | 7 cut(s) | 534, 1064, 1301, 2187, 2880, 3342, 3663 |
| BfoI | RGCGCY | 2 cut(s) | 3102, 3283 |
| BfrI | CTTAAG | 2 cut(s) | 563, 3356 |
| BfuAI | ACCTGC | 3 cut(s) | 1427, 1580, 2078 |
| BfuI | GTATCC | 1 cut(s) | 1688 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3272 |
| BglII | AGATCT | 1 cut(s) | 2893 |
| BlpI | GCTNAGC | 4 cut(s) | 332, 1948, 3386, 4097 |
| Bme1390I | CCNGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| Bme18I | GGWCC | 7 cut(s) | 268, 602, 824, 1397, 1510, 2435, 3197 |
| BmeT110I | CYCGRG | 2 cut(s) | 443, 1007 |
| BmgBI | CACGTC | 2 cut(s) | 956, 1085 |
| BmrFI | CCNGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| BmrI | ACTGGG | 3 cut(s) | 2277, 4006, 4157 |
| BmuI | ACTGGG | 3 cut(s) | 2277, 4006, 4157 |
| BpiI | GAAGAC | 7 cut(s) | 659, 1155, 1869, 2863, 3313, 3629, 4097 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3533, 3565 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 332, 1948, 3386, 4097 |
| Bpu14I | TTCGAA | 1 cut(s) | 2458 |
| BpuEI | CTTGAG | 1 cut(s) | 752 |
| BsaAI | YACGTR | 2 cut(s) | 421, 432 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2473 |
| BsaI | GGTCTC | 2 cut(s) | 1899, 3916 |
| BsaWI | WCCGGW | 3 cut(s) | 35, 2101, 3062 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 767, 797, 972, 1002, 3810, 3840 |
| Bse118I | RCCGGY | 2 cut(s) | 35, 3062 |
| Bse1I | ACTGG | 8 cut(s) | 671, 1288, 1542, 2283, 2880, 3473, 4001, 4152 |
| Bse3DI | GCAATG | 3 cut(s) | 894, 3415, 3675 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2473 |
| BseBI | CCWGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| BseGI | GGATG | 7 cut(s) | 200, 1246, 1999, 2474, 2799, 3246, 3642 |
| BseJI | GATNNNNATC | 1 cut(s) | 2473 |
| BseMI | GCAATG | 3 cut(s) | 894, 3415, 3675 |
| BseMII | CTCAG | 8 cut(s) | 305, 346, 1494, 1631, 2133, 3912, 4067, 4088 |
| BseNI | ACTGG | 8 cut(s) | 671, 1288, 1542, 2283, 2880, 3473, 4001, 4152 |
| BseRI | GAGGAG | 6 cut(s) | 159, 305, 380, 485, 1887, 3382 |
| BseSI | GKGCMC | 9 cut(s) | 234, 325, 363, 1015, 2851, 3184, 3268, 3427, 3967 |
| BseYI | CCCAGC | 2 cut(s) | 408, 3835 |
| BsgI | GTGCAG | 3 cut(s) | 60, 2226, 4197 |
| BshNI | GGYRCC | 4 cut(s) | 67, 229, 2586, 3422 |
| BshTI | ACCGGT | 2 cut(s) | 35, 3062 |
| BsiHKAI | GWGCWC | 5 cut(s) | 381, 785, 1008, 2067, 3967 |
| BsiHKCI | CYCGRG | 2 cut(s) | 443, 1007 |
| BsiSI | CCGG | 3 cut(s) | 36, 2102, 3063 |
| BsmAI | GTCTC | 4 cut(s) | 400, 1899, 3146, 3916 |
| BsmBI | CGTCTC | 1 cut(s) | 400 |
| BsmI | GAATGC | 1 cut(s) | 4205 |
| Bso31I | GGTCTC | 2 cut(s) | 1899, 3916 |
| BsoBI | CYCGRG | 2 cut(s) | 443, 1007 |
| Bsp119I | TTCGAA | 1 cut(s) | 2458 |
| Bsp120I | GGGCCC | 2 cut(s) | 321, 3264 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 332, 1948, 3386, 4097 |
| Bsp19I | CCATGG | 5 cut(s) | 2851, 2928, 3436, 3787, 4170 |
| BspACI | CCGC | 7 cut(s) | 224, 311, 351, 354, 1256, 1507, 3012 |
| BspCNI | CTCAG | 8 cut(s) | 304, 345, 1495, 1630, 2132, 3911, 4066, 4089 |
| BspHI | TCATGA | 3 cut(s) | 621, 1594, 3531 |
| BspMAI | CTGCAG | 3 cut(s) | 538, 1068, 3667 |
| BspMI | ACCTGC | 3 cut(s) | 1427, 1580, 2078 |
| BspT104I | TTCGAA | 1 cut(s) | 2458 |
| BspT107I | GGYRCC | 4 cut(s) | 67, 229, 2586, 3422 |
| BspTI | CTTAAG | 2 cut(s) | 563, 3356 |
| BspTNI | GGTCTC | 2 cut(s) | 1899, 3916 |
| BsrBI | CCGCTC | 2 cut(s) | 313, 1507 |
| BsrDI | GCAATG | 3 cut(s) | 894, 3415, 3675 |
| BsrFI | RCCGGY | 2 cut(s) | 35, 3062 |
| BsrI | ACTGG | 8 cut(s) | 671, 1288, 1542, 2283, 2880, 3473, 4001, 4152 |
| BssAI | RCCGGY | 2 cut(s) | 35, 3062 |
| BssSI | CACGAG | 1 cut(s) | 3675 |
| Bst2BI | CACGAG | 1 cut(s) | 3675 |
| Bst2UI | CCWGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| Bst4CI | ACNGT | 8 cut(s) | 246, 460, 1437, 1491, 2197, 2419, 3319, 3850 |
| Bst6I | CTCTTC | 6 cut(s) | 105, 1470, 1992, 2509, 3534, 4122 |
| BstAFI | CTTAAG | 2 cut(s) | 563, 3356 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 884, 3860 |
| BstBAI | YACGTR | 2 cut(s) | 421, 432 |
| BstBI | TTCGAA | 1 cut(s) | 2458 |
| BstDSI | CCRYGG | 5 cut(s) | 2851, 2928, 3436, 3787, 4170 |
| BstEII | GGTNACC | 1 cut(s) | 3591 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 446, 2304 |
| BstF5I | GGATG | 7 cut(s) | 200, 1246, 1999, 2474, 2799, 3246, 3642 |
| BstH2I | RGCGCY | 2 cut(s) | 3102, 3283 |
| BstHHI | GCGC | 4 cut(s) | 1827, 3101, 3282, 3943 |
| BstMAI | GTCTC | 4 cut(s) | 400, 1899, 3146, 3916 |
| BstNI | CCWGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| BstNSI | RCATGY | 3 cut(s) | 1432, 1726, 3244 |
| BstPI | GGTNACC | 1 cut(s) | 3591 |
| BstSCI | CCNGG | 6 cut(s) | 682, 1813, 2635, 3481, 3884, 4137 |
| BstSFI | CTRYAG | 7 cut(s) | 534, 1064, 1301, 2187, 2880, 3342, 3663 |
| BstSLI | GKGCMC | 9 cut(s) | 234, 325, 363, 1015, 2851, 3184, 3268, 3427, 3967 |
| BstV2I | GAAGAC | 7 cut(s) | 659, 1155, 1869, 2863, 3313, 3629, 4097 |
| BstX2I | RGATCY | 5 cut(s) | 626, 1151, 1384, 2545, 2893 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 662, 975, 2557, 3443, 3458 |
| BstYI | RGATCY | 5 cut(s) | 626, 1151, 1384, 2545, 2893 |
| BsuI | GTATCC | 1 cut(s) | 1688 |
| BtgI | CCRYGG | 5 cut(s) | 2851, 2928, 3436, 3787, 4170 |
| BtgZI | GCGATG | 1 cut(s) | 1673 |
| BtrI | CACGTC | 2 cut(s) | 956, 1085 |
| BtsCI | GGATG | 7 cut(s) | 200, 1246, 1999, 2474, 2799, 3246, 3642 |
| BtsI | GCAGTG | 1 cut(s) | 3870 |
| BtsIMutI | CAGTG | 4 cut(s) | 678, 1990, 3846, 3870 |
| BveI | ACCTGC | 3 cut(s) | 1427, 1580, 2078 |
| CaiI | CAGNNNCTG | 3 cut(s) | 997, 2759, 4184 |
| CciI | TCATGA | 3 cut(s) | 621, 1594, 3531 |
| CfoI | GCGC | 4 cut(s) | 1827, 3101, 3282, 3943 |
| Cfr10I | RCCGGY | 2 cut(s) | 35, 3062 |
| CseI | GACGC | 5 cut(s) | 69, 1352, 1541, 1739, 4102 |
| Csp6I | GTAC | 5 cut(s) | 236, 946, 2443, 2587, 2633 |
| CspAI | ACCGGT | 2 cut(s) | 35, 3062 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3049, 3084 |
| CviQI | GTAC | 5 cut(s) | 236, 946, 2443, 2587, 2633 |
| DraIII | CACNNNGTG | 1 cut(s) | 2713 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1618 |
| EaeI | YGGCCR | 6 cut(s) | 1650, 1811, 1858, 2999, 3233, 3433 |
| Eam1104I | CTCTTC | 6 cut(s) | 105, 1470, 1992, 2509, 3534, 4122 |
| EarI | CTCTTC | 6 cut(s) | 105, 1470, 1992, 2509, 3534, 4122 |
| EciI | GGCGGA | 1 cut(s) | 340 |
| Ecl136II | GAGCTC | 2 cut(s) | 379, 783 |
| Eco147I | AGGCCT | 2 cut(s) | 867, 1601 |
| Eco24I | GRGCYC | 4 cut(s) | 325, 381, 785, 3268 |
| Eco31I | GGTCTC | 2 cut(s) | 1899, 3916 |
| Eco32I | GATATC | 2 cut(s) | 2007, 3720 |
| Eco47I | GGWCC | 7 cut(s) | 268, 602, 824, 1397, 1510, 2435, 3197 |
| Eco47III | AGCGCT | 2 cut(s) | 3100, 3281 |
| Eco53kI | GAGCTC | 2 cut(s) | 379, 783 |
| Eco57I | CTGAAG | 8 cut(s) | 86, 134, 890, 2094, 2526, 2712, 2970, 3558 |
| Eco72I | CACGTG | 2 cut(s) | 421, 432 |
| Eco88I | CYCGRG | 2 cut(s) | 443, 1007 |
| Eco91I | GGTNACC | 1 cut(s) | 3591 |
| EcoICRI | GAGCTC | 2 cut(s) | 379, 783 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 446, 2304 |
| EcoO109I | RGGNCCY | 3 cut(s) | 322, 1397, 1510 |
| EcoO65I | GGTNACC | 1 cut(s) | 3591 |
| EcoRI | GAATTC | 2 cut(s) | 3208, 3486 |
| EcoRII | CCWGG | 6 cut(s) | 682, 1813, 2635, 3481, 3884, 4137 |
| EcoRV | GATATC | 2 cut(s) | 2007, 3720 |
| EcoT22I | ATGCAT | 3 cut(s) | 1336, 1430, 3242 |
| EcoT38I | GRGCYC | 4 cut(s) | 325, 381, 785, 3268 |
| Esp3I | CGTCTC | 1 cut(s) | 400 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 132, 164, 3350, 3382 |
| FauI | CCCGC | 3 cut(s) | 318, 1249, 1500 |
| FauNDI | CATATG | 2 cut(s) | 719, 4015 |
| FbaI | TGATCA | 3 cut(s) | 1591, 2139, 3750 |
| FblI | GTMKAC | 2 cut(s) | 1087, 3894 |
| FokI | GGATG | 7 cut(s) | 187, 1253, 2006, 2461, 2786, 3233, 3649 |
| FriOI | GRGCYC | 4 cut(s) | 325, 381, 785, 3268 |
| FspI | TGCGCA | 1 cut(s) | 1826 |
| GlaI | GCGC | 4 cut(s) | 1826, 3100, 3281, 3942 |
| GsaI | CCCAGC | 2 cut(s) | 412, 3839 |
| HaeII | RGCGCY | 2 cut(s) | 3102, 3283 |
| HapII | CCGG | 3 cut(s) | 36, 2102, 3063 |
| HgaI | GACGC | 5 cut(s) | 69, 1352, 1541, 1739, 4102 |
| HhaI | GCGC | 4 cut(s) | 1827, 3101, 3282, 3943 |
| Hin6I | GCGC | 4 cut(s) | 1825, 3099, 3280, 3941 |
| HinP1I | GCGC | 4 cut(s) | 1825, 3099, 3280, 3941 |
| HincII | GTYRAC | 2 cut(s) | 46, 1088 |
| HindII | GTYRAC | 2 cut(s) | 46, 1088 |
| HindIII | AAGCTT | 2 cut(s) | 146, 3168 |
| HpaII | CCGG | 3 cut(s) | 36, 2102, 3063 |
| HphI | GGTGA | 9 cut(s) | 245, 271, 521, 1601, 2372, 2481, 2699, 3178, 3897 |
| Hpy166II | GTNNAC | 8 cut(s) | 46, 680, 1088, 1289, 2873, 3403, 3895, 3965 |
| Hpy8I | GTNNAC | 8 cut(s) | 46, 680, 1088, 1289, 2873, 3403, 3895, 3965 |
| Hpy99I | CGWCG | 6 cut(s) | 85, 250, 377, 960, 1089, 1557 |
| HpyCH4III | ACNGT | 8 cut(s) | 246, 460, 1437, 1491, 2197, 2419, 3319, 3850 |
| HpyCH4IV | ACGT | 6 cut(s) | 420, 431, 955, 1084, 3178, 3399 |
| HpySE526I | ACGT | 6 cut(s) | 420, 431, 955, 1084, 3178, 3399 |
| HspAI | GCGC | 4 cut(s) | 1825, 3099, 3280, 3941 |
| KflI | GGGWCCC | 1 cut(s) | 1510 |
| KpnI | GGTACC | 1 cut(s) | 2590 |
| Ksp22I | TGATCA | 3 cut(s) | 1591, 2139, 3750 |
| LmnI | GCTCC | 8 cut(s) | 318, 341, 788, 1184, 2062, 3096, 3106, 3395 |
| MaeII | ACGT | 6 cut(s) | 420, 431, 955, 1084, 3178, 3399 |
| MbiI | CCGCTC | 2 cut(s) | 313, 1507 |
| MfeI | CAATTG | 1 cut(s) | 593 |
| MflI | RGATCY | 5 cut(s) | 626, 1151, 1384, 2545, 2893 |
| MlsI | TGGCCA | 6 cut(s) | 1652, 1813, 1860, 3001, 3235, 3435 |
| MluNI | TGGCCA | 6 cut(s) | 1652, 1813, 1860, 3001, 3235, 3435 |
| MlyI | GAGTC | 9 cut(s) | 18, 257, 259, 1064, 2290, 2635, 2710, 2774, 3890 |
| MmeI | TCCRAC | 3 cut(s) | 298, 938, 2030 |
| Mox20I | TGGCCA | 6 cut(s) | 1652, 1813, 1860, 3001, 3235, 3435 |
| Mph1103I | ATGCAT | 3 cut(s) | 1336, 1430, 3242 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2518, 2860, 3543 |
| MscI | TGGCCA | 6 cut(s) | 1652, 1813, 1860, 3001, 3235, 3435 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2555, 3333 |
| Msp20I | TGGCCA | 6 cut(s) | 1652, 1813, 1860, 3001, 3235, 3435 |
| MspA1I | CMGCKG | 5 cut(s) | 997, 1069, 2240, 2948, 4184 |
| MspCI | CTTAAG | 2 cut(s) | 563, 3356 |
| MspI | CCGG | 3 cut(s) | 36, 2102, 3063 |
| MspR9I | CCNGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| MunI | CAATTG | 1 cut(s) | 593 |
| Mva1269I | GAATGC | 1 cut(s) | 4205 |
| MvaI | CCWGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| NcoI | CCATGG | 5 cut(s) | 2851, 2928, 3436, 3787, 4170 |
| NdeI | CATATG | 2 cut(s) | 719, 4015 |
| NmuCI | GTSAC | 5 cut(s) | 251, 2705, 2713, 3287, 3992 |
| NsbI | TGCGCA | 1 cut(s) | 1826 |
| NsiI | ATGCAT | 3 cut(s) | 1336, 1430, 3242 |
| NspI | RCATGY | 3 cut(s) | 1432, 1726, 3244 |
| NspV | TTCGAA | 1 cut(s) | 2458 |
| OliI | CACNNNNGTG | 1 cut(s) | 3333 |
| PaeI | GCATGC | 2 cut(s) | 1432, 3244 |
| PaeR7I | CTCGAG | 1 cut(s) | 443 |
| PagI | TCATGA | 3 cut(s) | 621, 1594, 3531 |
| PaqCI | CACCTGC | 1 cut(s) | 2078 |
| PceI | AGGCCT | 2 cut(s) | 867, 1601 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2464 |
| PctI | GAATGC | 1 cut(s) | 4205 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2518, 2860, 3543 |
| PfeI | GAWTC | 9 cut(s) | 154, 214, 1079, 1096, 1703, 2373, 2561, 3544, 3812 |
| PflFI | GACNNNGTC | 1 cut(s) | 266 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3793 |
| PinAI | ACCGGT | 2 cut(s) | 35, 3062 |
| PleI | GAGTC | 9 cut(s) | 17, 257, 258, 1063, 2290, 2635, 2710, 2773, 3890 |
| PmaCI | CACGTG | 2 cut(s) | 421, 432 |
| PmlI | CACGTG | 2 cut(s) | 421, 432 |
| PpsI | GAGTC | 9 cut(s) | 17, 257, 258, 1063, 2290, 2635, 2710, 2773, 3890 |
| Ppu21I | YACGTR | 2 cut(s) | 421, 432 |
| PpuMI | RGGWCCY | 2 cut(s) | 1397, 1510 |
| PshBI | ATTAAT | 2 cut(s) | 1311, 1883 |
| PsiI | TTATAA | 2 cut(s) | 2084, 2531 |
| Psp124BI | GAGCTC | 2 cut(s) | 381, 785 |
| Psp5II | RGGWCCY | 2 cut(s) | 1397, 1510 |
| Psp6I | CCWGG | 6 cut(s) | 682, 1813, 2635, 3481, 3884, 4137 |
| PspCI | CACGTG | 2 cut(s) | 421, 432 |
| PspEI | GGTNACC | 1 cut(s) | 3591 |
| PspFI | CCCAGC | 2 cut(s) | 408, 3835 |
| PspGI | CCWGG | 6 cut(s) | 682, 1813, 2635, 3481, 3884, 4137 |
| PspOMI | GGGCCC | 2 cut(s) | 321, 3264 |
| PspPPI | RGGWCCY | 2 cut(s) | 1397, 1510 |
| PstI | CTGCAG | 3 cut(s) | 538, 1068, 3667 |
| PstNI | CAGNNNCTG | 3 cut(s) | 997, 2759, 4184 |
| PsuI | RGATCY | 5 cut(s) | 626, 1151, 1384, 2545, 2893 |
| PsyI | GACNNNGTC | 1 cut(s) | 266 |
| PvuII | CAGCTG | 5 cut(s) | 997, 1069, 2240, 2948, 4184 |
| RsaI | GTAC | 5 cut(s) | 237, 947, 2444, 2588, 2634 |
| RsaNI | GTAC | 5 cut(s) | 236, 946, 2443, 2587, 2633 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2555, 3333 |
| SacI | GAGCTC | 2 cut(s) | 381, 785 |
| SalI | GTCGAC | 1 cut(s) | 1086 |
| SchI | GAGTC | 9 cut(s) | 18, 257, 259, 1064, 2290, 2635, 2710, 2774, 3890 |
| ScrFI | CCNGG | 6 cut(s) | 684, 1815, 2637, 3483, 3886, 4139 |
| SfcI | CTRYAG | 7 cut(s) | 534, 1064, 1301, 2187, 2880, 3342, 3663 |
| Sfr274I | CTCGAG | 1 cut(s) | 443 |
| SfuI | TTCGAA | 1 cut(s) | 2458 |
| SgrAI | CRCCGGYG | 1 cut(s) | 3062 |
| SinI | GGWCC | 7 cut(s) | 268, 602, 824, 1397, 1510, 2435, 3197 |
| SlaI | CTCGAG | 1 cut(s) | 443 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2555, 3333 |
| SmlI | CTYRAG | 4 cut(s) | 443, 563, 731, 3356 |
| SmoI | CTYRAG | 4 cut(s) | 443, 563, 731, 3356 |
| SpeI | ACTAGT | 2 cut(s) | 1262, 4189 |
| SphI | GCATGC | 2 cut(s) | 1432, 3244 |
| SseBI | AGGCCT | 2 cut(s) | 867, 1601 |
| SsiI | CCGC | 7 cut(s) | 224, 311, 351, 354, 1256, 1507, 3012 |
| SspI | AATATT | 2 cut(s) | 28, 1465 |
| SstI | GAGCTC | 2 cut(s) | 381, 785 |
| StuI | AGGCCT | 2 cut(s) | 867, 1601 |
| StyD4I | CCNGG | 6 cut(s) | 682, 1813, 2635, 3481, 3884, 4137 |
| TaaI | ACNGT | 8 cut(s) | 246, 460, 1437, 1491, 2197, 2419, 3319, 3850 |
| TaiI | ACGT | 6 cut(s) | 423, 434, 958, 1087, 3181, 3402 |
| TaqII | GACCGA | 3 cut(s) | 256, 3185, 3498 |
| TatI | WGTACW | 1 cut(s) | 945 |
| TauI | GCSGC | 2 cut(s) | 356, 3014 |
| TfiI | GAWTC | 9 cut(s) | 154, 214, 1079, 1096, 1703, 2373, 2561, 3544, 3812 |
| TscAI | CASTG | 4 cut(s) | 678, 1990, 3853, 3870 |
| TseFI | GTSAC | 5 cut(s) | 251, 2705, 2713, 3287, 3992 |
| Tsp45I | GTSAC | 5 cut(s) | 251, 2705, 2713, 3287, 3992 |
| TspGWI | ACGGA | 4 cut(s) | 63, 361, 3556, 3934 |
| TspRI | CASTG | 4 cut(s) | 678, 1990, 3853, 3870 |
| Tth111I | GACNNNGTC | 1 cut(s) | 266 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3793 |
| Vha464I | CTTAAG | 2 cut(s) | 563, 3356 |
| VneI | GTGCAC | 1 cut(s) | 3963 |
| VpaK11BI | GGWCC | 7 cut(s) | 268, 602, 824, 1397, 1510, 2435, 3197 |
| VspI | ATTAAT | 2 cut(s) | 1311, 1883 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 446, 2304 |
| XapI | RAATTY | 9 cut(s) | 607, 1127, 2525, 3016, 3048, 3208, 3486, 3950, 3978 |
| XceI | RCATGY | 3 cut(s) | 1432, 1726, 3244 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3458, 3604 |
| XhoI | CTCGAG | 1 cut(s) | 443 |
| XmiI | GTMKAC | 2 cut(s) | 1087, 3894 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2518, 2860, 3543 |
| Zsp2I | ATGCAT | 3 cut(s) | 1336, 1430, 3242 |