Rmu_co8449785.1_g000001

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449785.1
Physical Location & Seq
Forward (+)
1 .. 1358
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449785.1_g000001.1.cds

Sequence Viewer

Length: 1121 bp
gtgggagcgctccagctacgcttcctttaccctttgctgctctcatcagtctcacaataacctataaacttgataaagcttctgaacgtgccctcaccctgatcggtccagccttgaattctctggctgctggttgcccttggccatgcatgcccatcctagcctcattatgggcccagaaggcaaagcgctggagtgactaccttgtgttttctgcttctcaaaccgtcttccaccacaatagtgatgctgtagtccagcttcttaagagctgctttacatcaactcttgggctaagctcctctcacgtttacagcaatggtggtgtgggtgccctccttggccatggctttggttctcatttctctggtgggatcactccagttgcccctggaattctttacttgcgtgtgcatcggtctgtcagagatgtaatgttcatgactgaagagattctctctattctaatgctttccgttagagatattgcaagtactgggttacccagagagagagtggagaaattgaagaagaccaagtatgggatgagatatggacaggtttctcttactgcagcaatggctcgtgtcaggcttgcagcttcacttggggctactttagtttggatatcaggtgggtcaagtttagttcagtcattgatcaaagaaactctaccttcatggtttatatcgggccatggtttggatcaggaaggcagagaatctggaggtatggttgctatgctggggggttacactgttgcatactttgcagtgctttgtgggacatttgcctggggtgtggactcagcatcaccagcatcaaaacggagaccaaaggttctaggggcgcatttggaatttcttgctagtgcactagatgggaaaatttcgcttggttgtgactgggccatgtggcgagcatatgtatcggggtttgttagtttgatggtggcttgcactcagaaatgggtgctggaagttgatgttgaagtcttgaagacgctgagcaagggacttagactttggaatgaggaagagttggccctggcactactgggacttggtggagtaggggccatgggtgcagcagctgaactagttgttgaatgcgagttttga

Protein Analysis

372

Amino Acids

39.67

Weight (kDa)

8.78

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011732)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 702
AclWI GGATC 2 cut(s) 382, 713
AcoI YGGCCR 2 cut(s) 142, 342
AcsI RAATTY 4 cut(s) 117, 395, 859, 887
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 1 cut(s) 495
AfeI AGCGCT 2 cut(s) 9, 190
AfiI CCNNNNNNNGG 3 cut(s) 170, 542, 702
AflII CTTAAG 1 cut(s) 265
AgsI TTSAA 5 cut(s) 117, 528, 991, 999, 1108
AhlI ACTAGT 1 cut(s) 1098
AjnI CCWGG 3 cut(s) 390, 793, 1046
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 7 cut(s) 16, 79, 261, 272, 299, 601, 1093
AluI AGCT 7 cut(s) 16, 79, 261, 272, 299, 601, 1093
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 55, 825
Alw44I GTGCAC 1 cut(s) 872
AlwI GGATC 2 cut(s) 382, 713
AlwNI CAGNNNCTG 1 cut(s) 1093
Aor51HI AGCGCT 2 cut(s) 9, 190
AoxI GGCC 7 cut(s) 142, 173, 342, 693, 908, 1043, 1076
ApaI GGGCCC 1 cut(s) 177
ApaLI GTGCAC 1 cut(s) 872
ApeKI GCWGC 7 cut(s) 37, 127, 272, 574, 598, 1087, 1090
ApoI RAATTY 4 cut(s) 117, 395, 859, 887
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 3 cut(s) 10, 191, 852
AspS9I GGNCC 7 cut(s) 106, 173, 174, 693, 908, 1044, 1076
AsuHPI GGTGA 2 cut(s) 87, 806
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 4 cut(s) 93, 177, 336, 876
BalI TGGCCA 2 cut(s) 144, 344
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BauI CACGAG 1 cut(s) 584
BbsI GAAGAC 3 cut(s) 222, 538, 1006
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 7 cut(s) 24, 114, 259, 586, 610, 1099, 1102
BccI CCATC 3 cut(s) 163, 874, 942
BcgI CGANNNNNNTGC 2 cut(s) 911, 945
BciT130I CCWGG 3 cut(s) 392, 795, 1048
BclI TGATCA 1 cut(s) 659
BcoDI GTCTC 2 cut(s) 55, 825
BcuI ACTAGT 1 cut(s) 1098
BfaI CTAG 5 cut(s) 160, 844, 869, 877, 1099
BfmI CTRYAG 2 cut(s) 251, 572
BfoI RGCGCY 2 cut(s) 11, 192
BfrI CTTAAG 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 181
BisI GCNGC 7 cut(s) 38, 128, 273, 575, 599, 1088, 1091
BlpI GCTNAGC 2 cut(s) 295, 1006
BlsI GCNGC 7 cut(s) 39, 129, 274, 576, 600, 1089, 1092
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 3 cut(s) 392, 795, 1048
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 7 cut(s) 106, 173, 174, 693, 908, 1044, 1076
BmiI GGNNCC 3 cut(s) 175, 333, 1077
BmrFI CCNGG 3 cut(s) 392, 795, 1048
BmrI ACTGGG 3 cut(s) 506, 915, 1066
BmsI GCATC 4 cut(s) 237, 423, 820, 829
BmuI ACTGGG 3 cut(s) 506, 915, 1066
BpiI GAAGAC 3 cut(s) 222, 538, 1006
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 3 cut(s) 213, 365, 746
Bpu1102I GCTNAGC 2 cut(s) 295, 1006
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 8 cut(s) 139, 339, 345, 390, 696, 794, 1046, 1079
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 542, 702
Bse1I ACTGG 4 cut(s) 382, 501, 910, 1061
Bse3DI GCAATG 2 cut(s) 324, 584
BseBI CCWGG 3 cut(s) 392, 795, 1048
BseDI CCNNGG 8 cut(s) 139, 339, 345, 390, 696, 794, 1046, 1079
BseGI GGATG 2 cut(s) 155, 551
BseLI CCNNNNNNNGG 3 cut(s) 170, 542, 702
BseMI GCAATG 2 cut(s) 324, 584
BseMII CTCAG 3 cut(s) 821, 976, 997
BseNI ACTGG 4 cut(s) 382, 501, 910, 1061
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 4 cut(s) 93, 177, 336, 876
BseXI GCAGC 7 cut(s) 24, 114, 259, 586, 610, 1099, 1102
BseYI CCCAGC 1 cut(s) 744
BsgI GTGCAG 1 cut(s) 1106
BshFI GGCC 7 cut(s) 144, 175, 344, 695, 910, 1045, 1078
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 876
BslFI GGGAC 3 cut(s) 798, 1028, 1073
BslI CCNNNNNNNGG 3 cut(s) 170, 542, 702
BsmAI GTCTC 2 cut(s) 55, 825
BsmFI GGGAC 3 cut(s) 798, 1028, 1073
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 7 cut(s) 144, 175, 344, 695, 910, 1045, 1078
Bso31I GGTCTC 1 cut(s) 825
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 4 cut(s) 93, 177, 336, 876
Bsp143I GATC 4 cut(s) 101, 374, 659, 705
Bsp1720I GCTNAGC 2 cut(s) 295, 1006
Bsp19I CCATGG 3 cut(s) 345, 696, 1079
BspANI GGCC 7 cut(s) 144, 175, 344, 695, 910, 1045, 1078
BspCNI CTCAG 3 cut(s) 820, 975, 998
BspHI TCATGA 1 cut(s) 440
BspLI GGNNCC 3 cut(s) 175, 333, 1077
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 2 cut(s) 382, 713
BspT107I GGYRCC 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 825
BsrDI GCAATG 2 cut(s) 324, 584
BsrI ACTGG 4 cut(s) 382, 501, 910, 1061
BssECI CCNNGG 8 cut(s) 139, 339, 345, 390, 696, 794, 1046, 1079
BssMI GATC 4 cut(s) 101, 374, 659, 705
BssSI CACGAG 1 cut(s) 584
BssT1I CCWWGG 5 cut(s) 139, 339, 345, 696, 1079
Bst2BI CACGAG 1 cut(s) 584
Bst2UI CCWGG 3 cut(s) 392, 795, 1048
Bst4CI ACNGT 2 cut(s) 228, 759
Bst6I CTCTTC 2 cut(s) 443, 1031
BstAFI CTTAAG 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 769
BstC8I GCNNGC 4 cut(s) 151, 596, 920, 957
BstDEI CTNAG 5 cut(s) 295, 807, 962, 1006, 1018
BstDSI CCRYGG 3 cut(s) 345, 696, 1079
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 2 cut(s) 155, 551
BstH2I RGCGCY 2 cut(s) 11, 192
BstHHI GCGC 3 cut(s) 10, 191, 852
BstKTI GATC 4 cut(s) 104, 377, 662, 708
BstMAI GTCTC 2 cut(s) 55, 825
BstMBI GATC 4 cut(s) 101, 374, 659, 705
BstMWI GCNNNNNNNGC 6 cut(s) 150, 181, 580, 769, 817, 1084
BstNI CCWGG 3 cut(s) 392, 795, 1048
BstNSI RCATGY 1 cut(s) 153
BstPI GGTNACC 1 cut(s) 500
BstSCI CCNGG 3 cut(s) 390, 793, 1046
BstSFI CTRYAG 2 cut(s) 251, 572
BstSLI GKGCMC 4 cut(s) 93, 177, 336, 876
BstV1I GCAGC 7 cut(s) 24, 114, 259, 586, 610, 1099, 1102
BstV2I GAAGAC 3 cut(s) 222, 538, 1006
BstXI CCANNNNNNTGG 1 cut(s) 352
BsuRI GGCC 7 cut(s) 144, 175, 344, 695, 910, 1045, 1078
BtgI CCRYGG 3 cut(s) 345, 696, 1079
BtsCI GGATG 2 cut(s) 155, 551
BtsI GCAGTG 1 cut(s) 779
BtsIMutI CAGTG 2 cut(s) 755, 779
Cac8I GCNNGC 4 cut(s) 151, 596, 920, 957
CaiI CAGNNNCTG 1 cut(s) 1093
CciI TCATGA 1 cut(s) 440
CfoI GCGC 3 cut(s) 10, 191, 852
Cfr13I GGNCC 7 cut(s) 106, 173, 174, 693, 908, 1044, 1076
CseI GACGC 1 cut(s) 1011
Csp6I GTAC 1 cut(s) 494
CviAII CATG 8 cut(s) 146, 150, 346, 441, 680, 697, 912, 1080
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 5 cut(s) 295, 807, 962, 1006, 1018
DpnI GATC 4 cut(s) 103, 376, 661, 707
DpnII GATC 4 cut(s) 101, 374, 659, 705
EaeI YGGCCR 2 cut(s) 142, 342
Eam1104I CTCTTC 2 cut(s) 443, 1031
EarI CTCTTC 2 cut(s) 443, 1031
Eco130I CCWWGG 5 cut(s) 139, 339, 345, 696, 1079
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 825
Eco32I GATATC 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 106
Eco47III AGCGCT 2 cut(s) 9, 190
Eco57I CTGAAG 1 cut(s) 467
Eco91I GGTNACC 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 500
EcoRI GAATTC 2 cut(s) 117, 395
EcoRII CCWGG 3 cut(s) 390, 793, 1046
EcoRV GATATC 1 cut(s) 629
EcoT14I CCWWGG 5 cut(s) 139, 339, 345, 696, 1079
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 5 cut(s) 139, 339, 345, 696, 1079
FaeI CATG 8 cut(s) 149, 153, 349, 444, 683, 700, 915, 1083
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 3 cut(s) 798, 1028, 1073
FatI CATG 8 cut(s) 145, 149, 345, 440, 679, 696, 911, 1079
FauNDI CATATG 1 cut(s) 924
FbaI TGATCA 1 cut(s) 659
Fnu4HI GCNGC 7 cut(s) 38, 128, 273, 575, 599, 1088, 1091
FokI GGATG 2 cut(s) 142, 558
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 7 cut(s) 38, 128, 273, 575, 599, 1088, 1091
FspBI CTAG 5 cut(s) 160, 844, 869, 877, 1099
GlaI GCGC 3 cut(s) 9, 190, 851
GluI GCNGC 7 cut(s) 38, 128, 273, 575, 599, 1088, 1091
GsaI CCCAGC 1 cut(s) 748
GsuI CTGGAG 3 cut(s) 213, 365, 746
HaeII RGCGCY 2 cut(s) 11, 192
HaeIII GGCC 7 cut(s) 144, 175, 344, 695, 910, 1045, 1078
HgaI GACGC 1 cut(s) 1011
HhaI GCGC 3 cut(s) 10, 191, 852
Hin1II CATG 8 cut(s) 149, 153, 349, 444, 683, 700, 915, 1083
Hin6I GCGC 3 cut(s) 8, 189, 850
HinP1I GCGC 3 cut(s) 8, 189, 850
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 3 cut(s) 453, 721, 805
HphI GGTGA 2 cut(s) 87, 806
Hpy166II GTNNAC 3 cut(s) 312, 804, 874
Hpy188I TCNGA 3 cut(s) 84, 427, 965
Hpy188III TCNNGA 4 cut(s) 441, 709, 725, 996
Hpy8I GTNNAC 3 cut(s) 312, 804, 874
HpyAV CCTTC 3 cut(s) 174, 686, 706
HpyCH4III ACNGT 2 cut(s) 228, 759
HpyCH4IV ACGT 2 cut(s) 87, 308
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 181, 580, 769, 817, 1084
HpyF3I CTNAG 5 cut(s) 295, 807, 962, 1006, 1018
HpySE526I ACGT 2 cut(s) 87, 308
Hsp92II CATG 8 cut(s) 149, 153, 349, 444, 683, 700, 915, 1083
HspAI GCGC 3 cut(s) 8, 189, 850
Ksp22I TGATCA 1 cut(s) 659
Kzo9I GATC 4 cut(s) 101, 374, 659, 705
LmnI GCTCC 3 cut(s) 5, 15, 304
Lsp1109I GCAGC 7 cut(s) 24, 114, 259, 586, 610, 1099, 1102
LweI GCATC 4 cut(s) 237, 423, 820, 829
MaeI CTAG 5 cut(s) 160, 844, 869, 877, 1099
MaeII ACGT 2 cut(s) 87, 308
MaeIII GTNAC 4 cut(s) 196, 500, 751, 901
MalI GATC 4 cut(s) 103, 376, 661, 707
MboI GATC 4 cut(s) 101, 374, 659, 705
MboII GAAGA 6 cut(s) 222, 460, 540, 543, 1011, 1048
MhlI GDGCHC 4 cut(s) 93, 177, 336, 876
MlsI TGGCCA 2 cut(s) 144, 344
MluCI AATT 5 cut(s) 117, 395, 523, 859, 887
MluNI TGGCCA 2 cut(s) 144, 344
MlyI GAGTC 1 cut(s) 799
MnlI CCTC 6 cut(s) 103, 174, 312, 346, 721, 1026
Mox20I TGGCCA 2 cut(s) 144, 344
Mph1103I ATGCAT 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 2 cut(s) 144, 344
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 2 cut(s) 144, 344
MspA1I CMGCKG 1 cut(s) 1093
MspCI CTTAAG 1 cut(s) 265
MspR9I CCNGG 3 cut(s) 392, 795, 1048
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 3 cut(s) 392, 795, 1048
MwoI GCNNNNNNNGC 6 cut(s) 150, 181, 580, 769, 817, 1084
NcoI CCATGG 3 cut(s) 345, 696, 1079
NdeI CATATG 1 cut(s) 924
NdeII GATC 4 cut(s) 101, 374, 659, 705
NlaIII CATG 8 cut(s) 149, 153, 349, 444, 683, 700, 915, 1083
NlaIV GGNNCC 3 cut(s) 175, 333, 1077
NmuCI GTSAC 2 cut(s) 196, 901
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 242
PaeI GCATGC 1 cut(s) 153
PagI TCATGA 1 cut(s) 440
PctI GAATGC 1 cut(s) 1114
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 453, 721
PflMI CCANNNNNTGG 1 cut(s) 702
PkrI GCNGC 7 cut(s) 39, 129, 274, 576, 600, 1089, 1092
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp6I CCWGG 3 cut(s) 390, 793, 1046
PspEI GGTNACC 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 744
PspGI CCWGG 3 cut(s) 390, 793, 1046
PspN4I GGNNCC 3 cut(s) 175, 333, 1077
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 7 cut(s) 106, 173, 174, 693, 908, 1044, 1076
PstI CTGCAG 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 1093
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 7 cut(s) 38, 128, 273, 575, 599, 1088, 1091
Sau3AI GATC 4 cut(s) 101, 374, 659, 705
Sau96I GGNCC 7 cut(s) 106, 173, 174, 693, 908, 1044, 1076
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 3 cut(s) 392, 795, 1048
SduI GDGCHC 4 cut(s) 93, 177, 336, 876
SfaNI GCATC 4 cut(s) 237, 423, 820, 829
SfcI CTRYAG 2 cut(s) 251, 572
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 1098
SphI GCATGC 1 cut(s) 153
Sse9I AATT 5 cut(s) 117, 395, 523, 859, 887
SspMI CTAG 5 cut(s) 160, 844, 869, 877, 1099
StyD4I CCNGG 3 cut(s) 390, 793, 1046
StyI CCWWGG 5 cut(s) 139, 339, 345, 696, 1079
TaaI ACNGT 2 cut(s) 228, 759
TaiI ACGT 2 cut(s) 90, 311
TaqII GACCGA 2 cut(s) 94, 407
TasI AATT 5 cut(s) 117, 395, 523, 859, 887
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 2 cut(s) 453, 721
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 2 cut(s) 762, 779
TseFI GTSAC 2 cut(s) 196, 901
TseI GCWGC 7 cut(s) 37, 127, 272, 574, 598, 1087, 1090
Tsp45I GTSAC 2 cut(s) 196, 901
TspDTI ATGAA 2 cut(s) 429, 668
TspGWI ACGGA 2 cut(s) 465, 843
TspRI CASTG 2 cut(s) 762, 779
Van91I CCANNNNNTGG 1 cut(s) 702
Vha464I CTTAAG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 4 cut(s) 117, 395, 859, 887
XceI RCATGY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 5 cut(s) 160, 844, 869, 877, 1099
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.