mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G48110 |
| fragaria_vesca | FvH4_2g23980 FvH4_2g23980 |
| malus_domestica | MD03G1269000.v1.1 MD11G1289800.v1.1 |
| prunus_persica | Prupe.8G245000_v2.0.a1 |
| pyrus_communis | pycom03g21480 pycom11g25720 |
| rosa_chinensis | RchiOBHm_Chr6g0291641 |
| rosa_laevigata | RLG00000012100 |
| rosa_multiflora | Rmu_co8449785.1_g000001 Rmu_sc0002226.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00175900 |
| rosa_rugosa | Rorug06G0220600 |
| rosa_samantha | Rh6AG333200 Rh6BG340000 Rh6CG346300 Rh6DG333500 |
| rosa_wichuraiana | Rw6G029020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2015, 2462 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1549 |
| AatII | GACGTC | 1 cut(s) | 1152 |
| Acc16I | TGCGCA | 1 cut(s) | 1757 |
| Acc36I | ACCTGC | 2 cut(s) | 1358, 1511 |
| Acc65I | GGTACC | 1 cut(s) | 2517 |
| AccB1I | GGYRCC | 3 cut(s) | 160, 2517, 3353 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3724 |
| AccBSI | CCGCTC | 2 cut(s) | 244, 1438 |
| AccI | GTMKAC | 1 cut(s) | 1018 |
| AccII | CGCG | 1 cut(s) | 3432 |
| AciI | CCGC | 8 cut(s) | 155, 242, 282, 285, 1438, 1580, 2943, 3211 |
| AclI | AACGTT | 1 cut(s) | 685 |
| AcoI | YGGCCR | 7 cut(s) | 1566, 1581, 1742, 1789, 2930, 3164, 3364 |
| AcsI | RAATTY | 9 cut(s) | 538, 1058, 2456, 2947, 2979, 3139, 3417, 3881, 3909 |
| AcuI | CTGAAG | 7 cut(s) | 62, 821, 2025, 2457, 2643, 2901, 3489 |
| AcvI | CACGTG | 2 cut(s) | 352, 363 |
| AcyI | GRCGYC | 1 cut(s) | 1149 |
| AdeI | CACNNNGTG | 1 cut(s) | 2644 |
| AfaI | GTAC | 6 cut(s) | 168, 878, 1669, 2375, 2519, 2565 |
| AfeI | AGCGCT | 1 cut(s) | 3031 |
| AflII | CTTAAG | 2 cut(s) | 494, 3287 |
| AgeI | ACCGGT | 1 cut(s) | 2993 |
| AhlI | ACTAGT | 2 cut(s) | 1193, 4120 |
| AjiI | CACGTC | 2 cut(s) | 887, 1016 |
| AjnI | CCWGG | 6 cut(s) | 613, 1744, 2566, 3412, 3815, 4068 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2338, 2370 |
| AleI | CACNNNNGTG | 1 cut(s) | 3264 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 903, 935, 2193, 2225 |
| Alw21I | GWGCWC | 4 cut(s) | 312, 716, 939, 3898 |
| Alw26I | GTCTC | 4 cut(s) | 331, 1830, 3077, 3847 |
| Alw44I | GTGCAC | 1 cut(s) | 3894 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 928, 2690, 4115 |
| Ama87I | CYCGRG | 2 cut(s) | 374, 938 |
| Aor51HI | AGCGCT | 1 cut(s) | 3031 |
| ApaI | GGGCCC | 2 cut(s) | 256, 3199 |
| ApaLI | GTGCAC | 1 cut(s) | 3894 |
| ApoI | RAATTY | 9 cut(s) | 538, 1058, 2456, 2947, 2979, 3139, 3417, 3881, 3909 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4029, 4061 |
| AseI | ATTAAT | 2 cut(s) | 1242, 1814 |
| AsiGI | ACCGGT | 1 cut(s) | 2993 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2449, 2791, 3474 |
| Asp718I | GGTACC | 1 cut(s) | 2517 |
| AspLEI | GCGC | 4 cut(s) | 1758, 3032, 3432, 3874 |
| AsuHPI | GGTGA | 7 cut(s) | 202, 452, 1532, 2303, 2412, 2630, 3109 |
| AsuII | TTCGAA | 1 cut(s) | 2389 |
| AvaI | CYCGRG | 2 cut(s) | 374, 938 |
| AvaII | GGWCC | 7 cut(s) | 199, 533, 755, 1328, 1441, 2366, 3128 |
| BaeGI | GKGCMC | 9 cut(s) | 165, 256, 294, 946, 2782, 3115, 3199, 3358, 3898 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2501, 2534 |
| BalI | TGGCCA | 6 cut(s) | 1568, 1744, 1791, 2932, 3166, 3366 |
| BamHI | GGATCC | 2 cut(s) | 1082, 1315 |
| BanI | GGYRCC | 3 cut(s) | 160, 2517, 3353 |
| BanII | GRGCYC | 4 cut(s) | 256, 312, 716, 3199 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 831, 863, 3267, 3299 |
| BauI | CACGAG | 1 cut(s) | 3606 |
| BbrPI | CACGTG | 2 cut(s) | 352, 363 |
| BbsI | GAAGAC | 7 cut(s) | 590, 1086, 1800, 2794, 3244, 3560, 4028 |
| Bbv12I | GWGCWC | 4 cut(s) | 312, 716, 939, 3898 |
| BccI | CCATC | 9 cut(s) | 145, 714, 746, 1166, 2192, 2326, 3185, 3896, 3964 |
| BceAI | ACGGC | 5 cut(s) | 272, 283, 883, 1052, 1184 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3933, 3967 |
| BciT130I | CCWGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| BciVI | GTATCC | 1 cut(s) | 1619 |
| BclI | TGATCA | 4 cut(s) | 1522, 2070, 2308, 3681 |
| BcoDI | GTCTC | 4 cut(s) | 331, 1830, 3077, 3847 |
| BcuI | ACTAGT | 2 cut(s) | 1193, 4120 |
| BfmI | CTRYAG | 7 cut(s) | 465, 995, 1232, 2118, 2811, 3273, 3594 |
| BfoI | RGCGCY | 1 cut(s) | 3033 |
| BfrI | CTTAAG | 2 cut(s) | 494, 3287 |
| BfuAI | ACCTGC | 2 cut(s) | 1358, 1511 |
| BfuI | GTATCC | 1 cut(s) | 1619 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 730, 3203 |
| BglII | AGATCT | 1 cut(s) | 2824 |
| BlpI | GCTNAGC | 4 cut(s) | 263, 1879, 3317, 4028 |
| Bme1390I | CCNGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| Bme18I | GGWCC | 7 cut(s) | 199, 533, 755, 1328, 1441, 2366, 3128 |
| BmeT110I | CYCGRG | 2 cut(s) | 374, 938 |
| BmgBI | CACGTC | 2 cut(s) | 887, 1016 |
| BmrFI | CCNGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| BmrI | ACTGGG | 3 cut(s) | 2208, 3937, 4088 |
| BmuI | ACTGGG | 3 cut(s) | 2208, 3937, 4088 |
| BpiI | GAAGAC | 7 cut(s) | 590, 1086, 1800, 2794, 3244, 3560, 4028 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3464, 3496 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 263, 1879, 3317, 4028 |
| Bpu14I | TTCGAA | 1 cut(s) | 2389 |
| BpuEI | CTTGAG | 1 cut(s) | 683 |
| BsaAI | YACGTR | 2 cut(s) | 352, 363 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2404 |
| BsaHI | GRCGYC | 1 cut(s) | 1149 |
| BsaI | GGTCTC | 2 cut(s) | 1830, 3847 |
| BsaWI | WCCGGW | 2 cut(s) | 1561, 2993 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 698, 728, 903, 933, 3741, 3771 |
| Bse118I | RCCGGY | 1 cut(s) | 2993 |
| Bse1I | ACTGG | 9 cut(s) | 602, 1219, 1473, 1613, 2214, 2811, 3404, 3932, 4083 |
| Bse3DI | GCAATG | 3 cut(s) | 825, 3346, 3606 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2404 |
| BseBI | CCWGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| BseGI | GGATG | 7 cut(s) | 131, 1177, 1930, 2405, 2730, 3177, 3573 |
| BseJI | GATNNNNATC | 1 cut(s) | 2404 |
| BseMI | GCAATG | 3 cut(s) | 825, 3346, 3606 |
| BseMII | CTCAG | 9 cut(s) | 44, 236, 277, 1425, 1562, 2064, 3843, 3998, 4019 |
| BseNI | ACTGG | 9 cut(s) | 602, 1219, 1473, 1613, 2214, 2811, 3404, 3932, 4083 |
| BseRI | GAGGAG | 6 cut(s) | 18, 87, 236, 311, 1818, 3313 |
| BseSI | GKGCMC | 9 cut(s) | 165, 256, 294, 946, 2782, 3115, 3199, 3358, 3898 |
| BseYI | CCCAGC | 2 cut(s) | 339, 3766 |
| BsgI | GTGCAG | 2 cut(s) | 2157, 4128 |
| Bsh1236I | CGCG | 1 cut(s) | 3432 |
| BshNI | GGYRCC | 3 cut(s) | 160, 2517, 3353 |
| BshTI | ACCGGT | 1 cut(s) | 2993 |
| BsiHKAI | GWGCWC | 4 cut(s) | 312, 716, 939, 3898 |
| BsiHKCI | CYCGRG | 2 cut(s) | 374, 938 |
| BsiSI | CCGG | 2 cut(s) | 1562, 2994 |
| BsmAI | GTCTC | 4 cut(s) | 331, 1830, 3077, 3847 |
| BsmBI | CGTCTC | 1 cut(s) | 331 |
| BsmI | GAATGC | 1 cut(s) | 4136 |
| Bso31I | GGTCTC | 2 cut(s) | 1830, 3847 |
| BsoBI | CYCGRG | 2 cut(s) | 374, 938 |
| Bsp119I | TTCGAA | 1 cut(s) | 2389 |
| Bsp120I | GGGCCC | 2 cut(s) | 252, 3195 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 263, 1879, 3317, 4028 |
| Bsp19I | CCATGG | 5 cut(s) | 2782, 2859, 3367, 3718, 4101 |
| BspACI | CCGC | 8 cut(s) | 155, 242, 282, 285, 1438, 1580, 2943, 3211 |
| BspCNI | CTCAG | 9 cut(s) | 43, 235, 276, 1426, 1561, 2063, 3842, 3997, 4020 |
| BspFNI | CGCG | 1 cut(s) | 3432 |
| BspHI | TCATGA | 1 cut(s) | 1525 |
| BspMAI | CTGCAG | 3 cut(s) | 469, 999, 3598 |
| BspMI | ACCTGC | 2 cut(s) | 1358, 1511 |
| BspQI | GCTCTTC | 1 cut(s) | 429 |
| BspT104I | TTCGAA | 1 cut(s) | 2389 |
| BspT107I | GGYRCC | 3 cut(s) | 160, 2517, 3353 |
| BspTI | CTTAAG | 2 cut(s) | 494, 3287 |
| BspTNI | GGTCTC | 2 cut(s) | 1830, 3847 |
| BsrBI | CCGCTC | 2 cut(s) | 244, 1438 |
| BsrDI | GCAATG | 3 cut(s) | 825, 3346, 3606 |
| BsrFI | RCCGGY | 1 cut(s) | 2993 |
| BsrI | ACTGG | 9 cut(s) | 602, 1219, 1473, 1613, 2214, 2811, 3404, 3932, 4083 |
| BssAI | RCCGGY | 1 cut(s) | 2993 |
| BssNI | GRCGYC | 1 cut(s) | 1149 |
| BssSI | CACGAG | 1 cut(s) | 3606 |
| Bst2BI | CACGAG | 1 cut(s) | 3606 |
| Bst2UI | CCWGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| Bst4CI | ACNGT | 8 cut(s) | 177, 391, 1368, 1422, 2128, 2350, 3250, 3781 |
| Bst6I | CTCTTC | 6 cut(s) | 429, 1401, 1923, 2440, 3465, 4053 |
| BstACI | GRCGYC | 1 cut(s) | 1149 |
| BstAFI | CTTAAG | 2 cut(s) | 494, 3287 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 815, 3791 |
| BstBAI | YACGTR | 2 cut(s) | 352, 363 |
| BstBI | TTCGAA | 1 cut(s) | 2389 |
| BstDSI | CCRYGG | 5 cut(s) | 2782, 2859, 3367, 3718, 4101 |
| BstEII | GGTNACC | 1 cut(s) | 3522 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 377, 2235 |
| BstF5I | GGATG | 7 cut(s) | 131, 1177, 1930, 2405, 2730, 3177, 3573 |
| BstFNI | CGCG | 1 cut(s) | 3432 |
| BstH2I | RGCGCY | 1 cut(s) | 3033 |
| BstHHI | GCGC | 4 cut(s) | 1758, 3032, 3432, 3874 |
| BstMAI | GTCTC | 4 cut(s) | 331, 1830, 3077, 3847 |
| BstNI | CCWGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| BstNSI | RCATGY | 2 cut(s) | 1363, 1657 |
| BstPI | GGTNACC | 1 cut(s) | 3522 |
| BstSCI | CCNGG | 6 cut(s) | 613, 1744, 2566, 3412, 3815, 4068 |
| BstSFI | CTRYAG | 7 cut(s) | 465, 995, 1232, 2118, 2811, 3273, 3594 |
| BstSLI | GKGCMC | 9 cut(s) | 165, 256, 294, 946, 2782, 3115, 3199, 3358, 3898 |
| BstUI | CGCG | 1 cut(s) | 3432 |
| BstV2I | GAAGAC | 7 cut(s) | 590, 1086, 1800, 2794, 3244, 3560, 4028 |
| BstX2I | RGATCY | 5 cut(s) | 557, 1082, 1315, 2476, 2824 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 593, 2488, 3374, 3389 |
| BstYI | RGATCY | 5 cut(s) | 557, 1082, 1315, 2476, 2824 |
| BsuI | GTATCC | 1 cut(s) | 1619 |
| BtgI | CCRYGG | 5 cut(s) | 2782, 2859, 3367, 3718, 4101 |
| BtgZI | GCGATG | 1 cut(s) | 1604 |
| BtrI | CACGTC | 2 cut(s) | 887, 1016 |
| BtsCI | GGATG | 7 cut(s) | 131, 1177, 1930, 2405, 2730, 3177, 3573 |
| BtsI | GCAGTG | 1 cut(s) | 3801 |
| BtsIMutI | CAGTG | 3 cut(s) | 609, 3777, 3801 |
| BveI | ACCTGC | 2 cut(s) | 1358, 1511 |
| CaiI | CAGNNNCTG | 3 cut(s) | 928, 2690, 4115 |
| CciI | TCATGA | 1 cut(s) | 1525 |
| CfoI | GCGC | 4 cut(s) | 1758, 3032, 3432, 3874 |
| Cfr10I | RCCGGY | 1 cut(s) | 2993 |
| CseI | GACGC | 4 cut(s) | 1283, 1472, 1670, 4033 |
| Csp6I | GTAC | 6 cut(s) | 167, 877, 1668, 2374, 2518, 2564 |
| CspAI | ACCGGT | 1 cut(s) | 2993 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2980, 3015 |
| CviQI | GTAC | 6 cut(s) | 167, 877, 1668, 2374, 2518, 2564 |
| DraIII | CACNNNGTG | 1 cut(s) | 2644 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1549 |
| EaeI | YGGCCR | 7 cut(s) | 1566, 1581, 1742, 1789, 2930, 3164, 3364 |
| Eam1104I | CTCTTC | 6 cut(s) | 429, 1401, 1923, 2440, 3465, 4053 |
| EarI | CTCTTC | 6 cut(s) | 429, 1401, 1923, 2440, 3465, 4053 |
| EciI | GGCGGA | 1 cut(s) | 271 |
| Ecl136II | GAGCTC | 2 cut(s) | 310, 714 |
| Eco147I | AGGCCT | 3 cut(s) | 798, 1532, 1608 |
| Eco24I | GRGCYC | 4 cut(s) | 256, 312, 716, 3199 |
| Eco31I | GGTCTC | 2 cut(s) | 1830, 3847 |
| Eco32I | GATATC | 2 cut(s) | 1938, 3651 |
| Eco47I | GGWCC | 7 cut(s) | 199, 533, 755, 1328, 1441, 2366, 3128 |
| Eco47III | AGCGCT | 1 cut(s) | 3031 |
| Eco53kI | GAGCTC | 2 cut(s) | 310, 714 |
| Eco57I | CTGAAG | 7 cut(s) | 62, 821, 2025, 2457, 2643, 2901, 3489 |
| Eco72I | CACGTG | 2 cut(s) | 352, 363 |
| Eco88I | CYCGRG | 2 cut(s) | 374, 938 |
| Eco91I | GGTNACC | 1 cut(s) | 3522 |
| EcoICRI | GAGCTC | 2 cut(s) | 310, 714 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 377, 2235 |
| EcoO109I | RGGNCCY | 3 cut(s) | 253, 1328, 1441 |
| EcoO65I | GGTNACC | 1 cut(s) | 3522 |
| EcoRI | GAATTC | 2 cut(s) | 3139, 3417 |
| EcoRII | CCWGG | 6 cut(s) | 613, 1744, 2566, 3412, 3815, 4068 |
| EcoRV | GATATC | 2 cut(s) | 1938, 3651 |
| EcoT22I | ATGCAT | 2 cut(s) | 1267, 1361 |
| EcoT38I | GRGCYC | 4 cut(s) | 256, 312, 716, 3199 |
| Esp3I | CGTCTC | 1 cut(s) | 331 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 60, 92, 3281, 3313 |
| FauI | CCCGC | 2 cut(s) | 249, 1431 |
| FauNDI | CATATG | 2 cut(s) | 650, 3946 |
| FbaI | TGATCA | 4 cut(s) | 1522, 2070, 2308, 3681 |
| FblI | GTMKAC | 1 cut(s) | 1018 |
| FokI | GGATG | 7 cut(s) | 118, 1184, 1937, 2392, 2717, 3164, 3580 |
| FriOI | GRGCYC | 4 cut(s) | 256, 312, 716, 3199 |
| FspI | TGCGCA | 1 cut(s) | 1757 |
| GlaI | GCGC | 4 cut(s) | 1757, 3031, 3431, 3873 |
| GsaI | CCCAGC | 2 cut(s) | 343, 3770 |
| HaeII | RGCGCY | 1 cut(s) | 3033 |
| HapII | CCGG | 2 cut(s) | 1562, 2994 |
| HgaI | GACGC | 4 cut(s) | 1283, 1472, 1670, 4033 |
| HhaI | GCGC | 4 cut(s) | 1758, 3032, 3432, 3874 |
| Hin1I | GRCGYC | 1 cut(s) | 1149 |
| Hin6I | GCGC | 4 cut(s) | 1756, 3030, 3430, 3872 |
| HinP1I | GCGC | 4 cut(s) | 1756, 3030, 3430, 3872 |
| HincII | GTYRAC | 1 cut(s) | 1019 |
| HindII | GTYRAC | 1 cut(s) | 1019 |
| HindIII | AAGCTT | 2 cut(s) | 74, 3099 |
| HpaII | CCGG | 2 cut(s) | 1562, 2994 |
| HphI | GGTGA | 7 cut(s) | 202, 452, 1532, 2303, 2412, 2630, 3109 |
| Hpy166II | GTNNAC | 7 cut(s) | 611, 1019, 1220, 2804, 3334, 3826, 3896 |
| Hpy8I | GTNNAC | 7 cut(s) | 611, 1019, 1220, 2804, 3334, 3826, 3896 |
| Hpy99I | CGWCG | 6 cut(s) | 9, 181, 308, 891, 1020, 1488 |
| HpyCH4III | ACNGT | 8 cut(s) | 177, 391, 1368, 1422, 2128, 2350, 3250, 3781 |
| HpyCH4IV | ACGT | 8 cut(s) | 351, 362, 685, 886, 1015, 1149, 3109, 3330 |
| HpySE526I | ACGT | 8 cut(s) | 351, 362, 685, 886, 1015, 1149, 3109, 3330 |
| Hsp92I | GRCGYC | 1 cut(s) | 1149 |
| HspAI | GCGC | 4 cut(s) | 1756, 3030, 3430, 3872 |
| KflI | GGGWCCC | 1 cut(s) | 1441 |
| KpnI | GGTACC | 1 cut(s) | 2521 |
| Ksp22I | TGATCA | 4 cut(s) | 1522, 2070, 2308, 3681 |
| LguI | GCTCTTC | 1 cut(s) | 429 |
| LmnI | GCTCC | 8 cut(s) | 249, 272, 719, 1115, 1993, 3027, 3037, 3326 |
| MaeII | ACGT | 8 cut(s) | 351, 362, 685, 886, 1015, 1149, 3109, 3330 |
| MbiI | CCGCTC | 2 cut(s) | 244, 1438 |
| MfeI | CAATTG | 1 cut(s) | 524 |
| MflI | RGATCY | 5 cut(s) | 557, 1082, 1315, 2476, 2824 |
| MlsI | TGGCCA | 6 cut(s) | 1568, 1744, 1791, 2932, 3166, 3366 |
| MluNI | TGGCCA | 6 cut(s) | 1568, 1744, 1791, 2932, 3166, 3366 |
| MlyI | GAGTC | 8 cut(s) | 188, 190, 995, 2221, 2566, 2641, 2705, 3821 |
| MmeI | TCCRAC | 3 cut(s) | 229, 869, 1961 |
| Mox20I | TGGCCA | 6 cut(s) | 1568, 1744, 1791, 2932, 3166, 3366 |
| Mph1103I | ATGCAT | 2 cut(s) | 1267, 1361 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2449, 2791, 3474 |
| MscI | TGGCCA | 6 cut(s) | 1568, 1744, 1791, 2932, 3166, 3366 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2486, 3264 |
| Msp20I | TGGCCA | 6 cut(s) | 1568, 1744, 1791, 2932, 3166, 3366 |
| MspA1I | CMGCKG | 5 cut(s) | 928, 1000, 2171, 2879, 4115 |
| MspCI | CTTAAG | 2 cut(s) | 494, 3287 |
| MspI | CCGG | 2 cut(s) | 1562, 2994 |
| MspR9I | CCNGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| MunI | CAATTG | 1 cut(s) | 524 |
| Mva1269I | GAATGC | 1 cut(s) | 4136 |
| MvaI | CCWGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| MvnI | CGCG | 1 cut(s) | 3432 |
| NcoI | CCATGG | 5 cut(s) | 2782, 2859, 3367, 3718, 4101 |
| NdeI | CATATG | 2 cut(s) | 650, 3946 |
| NmuCI | GTSAC | 5 cut(s) | 900, 2636, 2644, 3218, 3923 |
| NsbI | TGCGCA | 1 cut(s) | 1757 |
| NsiI | ATGCAT | 2 cut(s) | 1267, 1361 |
| NspI | RCATGY | 2 cut(s) | 1363, 1657 |
| NspV | TTCGAA | 1 cut(s) | 2389 |
| OliI | CACNNNNGTG | 1 cut(s) | 3264 |
| PaeI | GCATGC | 1 cut(s) | 1363 |
| PaeR7I | CTCGAG | 1 cut(s) | 374 |
| PagI | TCATGA | 1 cut(s) | 1525 |
| PceI | AGGCCT | 3 cut(s) | 798, 1532, 1608 |
| PciSI | GCTCTTC | 1 cut(s) | 429 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2395 |
| PctI | GAATGC | 1 cut(s) | 4136 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2449, 2791, 3474 |
| PfeI | GAWTC | 8 cut(s) | 82, 145, 1010, 1027, 1634, 2492, 3475, 3743 |
| PflFI | GACNNNGTC | 1 cut(s) | 197 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3724 |
| PinAI | ACCGGT | 1 cut(s) | 2993 |
| PleI | GAGTC | 8 cut(s) | 188, 189, 994, 2221, 2566, 2641, 2704, 3821 |
| PmaCI | CACGTG | 2 cut(s) | 352, 363 |
| PmlI | CACGTG | 2 cut(s) | 352, 363 |
| PpsI | GAGTC | 8 cut(s) | 188, 189, 994, 2221, 2566, 2641, 2704, 3821 |
| Ppu21I | YACGTR | 2 cut(s) | 352, 363 |
| PpuMI | RGGWCCY | 2 cut(s) | 1328, 1441 |
| PshBI | ATTAAT | 2 cut(s) | 1242, 1814 |
| PsiI | TTATAA | 2 cut(s) | 2015, 2462 |
| Psp124BI | GAGCTC | 2 cut(s) | 312, 716 |
| Psp1406I | AACGTT | 1 cut(s) | 685 |
| Psp5II | RGGWCCY | 2 cut(s) | 1328, 1441 |
| Psp6I | CCWGG | 6 cut(s) | 613, 1744, 2566, 3412, 3815, 4068 |
| PspCI | CACGTG | 2 cut(s) | 352, 363 |
| PspEI | GGTNACC | 1 cut(s) | 3522 |
| PspFI | CCCAGC | 2 cut(s) | 339, 3766 |
| PspGI | CCWGG | 6 cut(s) | 613, 1744, 2566, 3412, 3815, 4068 |
| PspOMI | GGGCCC | 2 cut(s) | 252, 3195 |
| PspPPI | RGGWCCY | 2 cut(s) | 1328, 1441 |
| PstI | CTGCAG | 3 cut(s) | 469, 999, 3598 |
| PstNI | CAGNNNCTG | 3 cut(s) | 928, 2690, 4115 |
| PsuI | RGATCY | 5 cut(s) | 557, 1082, 1315, 2476, 2824 |
| PsyI | GACNNNGTC | 1 cut(s) | 197 |
| PvuII | CAGCTG | 5 cut(s) | 928, 1000, 2171, 2879, 4115 |
| RsaI | GTAC | 6 cut(s) | 168, 878, 1669, 2375, 2519, 2565 |
| RsaNI | GTAC | 6 cut(s) | 167, 877, 1668, 2374, 2518, 2564 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2486, 3264 |
| SacI | GAGCTC | 2 cut(s) | 312, 716 |
| SalI | GTCGAC | 1 cut(s) | 1017 |
| SapI | GCTCTTC | 1 cut(s) | 429 |
| SchI | GAGTC | 8 cut(s) | 188, 190, 995, 2221, 2566, 2641, 2705, 3821 |
| ScrFI | CCNGG | 6 cut(s) | 615, 1746, 2568, 3414, 3817, 4070 |
| SfcI | CTRYAG | 7 cut(s) | 465, 995, 1232, 2118, 2811, 3273, 3594 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 730 |
| Sfr274I | CTCGAG | 1 cut(s) | 374 |
| SfuI | TTCGAA | 1 cut(s) | 2389 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2993 |
| SinI | GGWCC | 7 cut(s) | 199, 533, 755, 1328, 1441, 2366, 3128 |
| SlaI | CTCGAG | 1 cut(s) | 374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2486, 3264 |
| SmlI | CTYRAG | 4 cut(s) | 374, 494, 662, 3287 |
| SmoI | CTYRAG | 4 cut(s) | 374, 494, 662, 3287 |
| SpeI | ACTAGT | 2 cut(s) | 1193, 4120 |
| SphI | GCATGC | 1 cut(s) | 1363 |
| SseBI | AGGCCT | 3 cut(s) | 798, 1532, 1608 |
| SsiI | CCGC | 8 cut(s) | 155, 242, 282, 285, 1438, 1580, 2943, 3211 |
| SspI | AATATT | 1 cut(s) | 1396 |
| SstI | GAGCTC | 2 cut(s) | 312, 716 |
| StuI | AGGCCT | 3 cut(s) | 798, 1532, 1608 |
| StyD4I | CCNGG | 6 cut(s) | 613, 1744, 2566, 3412, 3815, 4068 |
| TaaI | ACNGT | 8 cut(s) | 177, 391, 1368, 1422, 2128, 2350, 3250, 3781 |
| TaiI | ACGT | 8 cut(s) | 354, 365, 688, 889, 1018, 1152, 3112, 3333 |
| TaqII | GACCGA | 3 cut(s) | 187, 3116, 3429 |
| TatI | WGTACW | 1 cut(s) | 876 |
| TauI | GCSGC | 3 cut(s) | 287, 1583, 2945 |
| TfiI | GAWTC | 8 cut(s) | 82, 145, 1010, 1027, 1634, 2492, 3475, 3743 |
| TscAI | CASTG | 3 cut(s) | 609, 3784, 3801 |
| TseFI | GTSAC | 5 cut(s) | 900, 2636, 2644, 3218, 3923 |
| Tsp45I | GTSAC | 5 cut(s) | 900, 2636, 2644, 3218, 3923 |
| TspGWI | ACGGA | 3 cut(s) | 292, 3487, 3865 |
| TspRI | CASTG | 3 cut(s) | 609, 3784, 3801 |
| Tth111I | GACNNNGTC | 1 cut(s) | 197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3724 |
| Vha464I | CTTAAG | 2 cut(s) | 494, 3287 |
| VneI | GTGCAC | 1 cut(s) | 3894 |
| VpaK11BI | GGWCC | 7 cut(s) | 199, 533, 755, 1328, 1441, 2366, 3128 |
| VspI | ATTAAT | 2 cut(s) | 1242, 1814 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 377, 2235 |
| XapI | RAATTY | 9 cut(s) | 538, 1058, 2456, 2947, 2979, 3139, 3417, 3881, 3909 |
| XceI | RCATGY | 2 cut(s) | 1363, 1657 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3389, 3535 |
| XhoI | CTCGAG | 1 cut(s) | 374 |
| XmiI | GTMKAC | 1 cut(s) | 1018 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2449, 2791, 3474 |
| ZraI | GACGTC | 1 cut(s) | 1150 |
| Zsp2I | ATGCAT | 2 cut(s) | 1267, 1361 |