Rh6AG333200

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
53431579 .. 53441548
9970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG333200.1

Sequence Viewer

Length: 3993 bp
ATGGCGGTGGTGCCCGTACATCAACCGTCGAGTCATCTATGGGACTCGGTCCTCCAACTCACCAAGTCAGCTCAGGACAAGAACAGCGACCCGCTCCTCTGGGCCCTCCAGCTCAGCTCCAGCCTCAATTCCGCCGCCGTGCCCTTGCCGTCCGTCGAGCTCGCCCACCTCCTCGTCTCCCACATCTGCTGGGGCAACCACGTGCCGATCACGTGGAAGTTCCTCGAGAAGGCTTTGACCGTCAAGATCGTCCCTCCCATGCTCGTCCTCGCTCTCCTCTCTACCAAGGTTGTTCCAAATCGACACATTCACCCTGCAGCATATAGGCTTTATATGGAACTTCTTAAGAGGCATACACTTTCATTTGCTTCTCAATTGAATGGACCAAATTTTCAGAAAATCATGAGATCCATTGATGATGTTCTGCAACTTTCCCAACAATATGGTCTTCCAGTGTGTGAACCTGGAGTTCTTCTTGTTGAGTTTGTCTTTTCAATCATATGGCAGTTACTTGAGGCATCATTAGATGATGAACGTTTGCTCGAACTTACTCCAGACAAGAGCTCCAGATGGCCTACTAGACCACAAGATATGGAAATAGATGGTCCTGATAGTTTTAATGAAAAGAGAAGTGAGCAAAATGAAGGCCTGAAGAAAGCAAATACTGCAATGGCTATTGAGATAATTGTAGAGTTTCTTCAAAACAAAGTAACTTCAAGGATTTTGTACTTGGCACGTCGGAATATGCCGTCACATTGGAGAGGTTTCGTTCAGCAGCTGCAAGTGCTCGGGGCACACTCATCAGTTTTGAGGACTTTGAAACATATAACTCCAGAGTCCCTTCTGCAGCTGTCATCTGATTCACGTCGACTTCTGAATCGGGAAGGCAAAACAATTTCAAGGCAAGAATTTCATGCCGTATTGTCTTTTGGATCCCTGATGTCTTCTGCTTGTCAATCACATGGAGCTAGTTCGTCTGCCTTTTGGCTTCCTATTGACCTCTTTCTTGAAGATGCTATGGATGGATCAGAAGTAGCGGGAACTAGTGCCATTGAAACTCTTACTGGTTTACTAAAGGCTCTGCAGGCAATTAATGGGACTACATGGCACAATGCATTTTTAGGGGTATGGATTGCAGCTCTGCGTCTTATTCAAAGGGAAAGGGATCCCAAGGAAGGACCTGTTCCTCGCCTTGATACCTGCTTATGCATGCTACTGTCTATAACAACACTTGCTGTTACAAATATTGTTGAAGAAGAGGAAGCTGAACTGTTGAAGGAAGCTGAGCGGGACCCTACTAACCAAGGGAAGGAAAAACTGGCTCTGGGAAAGCGTCGCAGGGATTTAATTACCTGCTTACAGCTATTGGGTGATCATGAGGCCTTATTAACGACACCTCAGTCTGTTTGTTCGGTGGTCAATCAAGCTGTGGCCAAGGCAATGATGTTTAGATCAGGCCTTCCAGTCAGTAATGGATACTATGAATCTATTAGTGTGAATGACATGCCAATAAATTGTACGGGAAATCTGCGTCATCTAATTGTTGAGGCTTGTATTGCTCGGAACCTACTAGACACATCAGCATATTTCTGGCCAGGTTATGTGCGCAGCAGCAACCAAGTAATGCGTAATGTGTCTAGCCAAGGGCCTACTTGGTCTTCATTAATGAAAGGGTCTCCTCTAACTCCACCAATGGTTAATGCTTTGGTTACAACTCCAGCTTCTAGCTTAGCAGAGATCGAGAAAATATATGAGATTGCAGTCAGTGGTTCGGATGAAGAGAAGATATCTGCTGCTACCATTCTTTGTGGGGCTTCTCTAGTTCGTGGTTGGAATATACAGGAGCACACCTGCCTTTTCATTATAAAGCTGCTATCCCCTCCGGTTCCTTCAGATTACTCAGGGAGTGATAGCCATTTGATCAGCTATGCTTCATTCTTTAATGTTCTTCTGGTTGGGGTATCATCTATAGATACTGTTCAGATTTTCTCCTTACTTGGATTGGTTCCACTACTTGCAGCTGCACTAATGCCCATCTGTGAAGTGTTTGGATCGAGTGTTCCCAGTCCTTCATGGACTCCTACAACAGGGGAGGAACTCTCATGTCATGCAGTTTTCTCCAATGCTTTTACACTTCTATTGAGGTTATGGAGATTTGATCACCCACCCCTTGAACACATGATGGGGGACTTGCCAACCGTGGGTTCCCAAGTTGGTCCAGAGTACCTCTTGGTGCTTCGAAACGCTCGATTAGCATCCTTTGGTAATTCACCAATGGATCGAATTAAAAGCAGAAGAGTTTCAAAATTTATAACCTTTTCTTCAGATCCCATTATTATGGATTCCTTTCCAAAATTGAAACTCTGGTACCAGCAGCATCAAAAATGTATTTGTTCCACCCTCTCTGGGCTTGTACCTGGGACTCCTGTTCATCAGATTGTTGATGCCCTCCTTACCATGATGTTCAGAAAAATAAACAGAAGCAGTCACCCTGTGACTCCCGCAACTTCAGGTAGCAGTAATTCTTCTGCATCAGGAACTGATGAGTCCTCTATCAAACTGAAAGTGCCAGCATGGGACATCCTTGAAGCAACTCCATTTGTGCTTGATGCTGCTCTTACTGCGTGTGCCCATGGAAGACTTTCTCCCCGTGAACTGGCTACAGGACTGAAAGATCTTGCTGATTATCTGCCAGCAACTTTGGCAACCATGGTAAGCTATTTTTCAGCTGAAGTAACACGGGGAATATGGAAGCCAGCGTTTATGAATGGAACTGATTGGCCAAGCCCTGCCGCAAATTTATCCATTGTTGAGCAGCAGATAAAGAAAATTCTAGCTGCCACCGGTGTTGATGTGCCTAGCCTTGCAGTAGGTGGGAGCGCTCCAGCTACGCTTCCTTTACCCTTTGCTGCTCTCATCAGTCTCACAATAACCTATAAACTTGATAAAGCTTCTGAACGTGCCCTCACCCTGATCGGTCCAGCCTTGAATTCTCTGGCTGCTGGTTGCCCTTGGCCATGCATGCCCATCCTAGCCTCATTATGGGCCCAGAAGGCAAAGCGCTGGAGTGACTACCTTGTGTTTTCTGCTTCTCAAACCGTCTTCCACCACAATAGTGATGCTGTAGTCCAGCTTCTTAAGAGCTGCTTTACATCAACTCTTGGGTTAAGCTCCTCTCACGTTTACAGCAATGGTGGTGTGGGTGCCCTCCTTGGCCATGGCTTTGGTTCCCATTTCTCTGGTGGGATCACTCCAGTTGCCCCTGGAATTCTTTACTTGCGTGTGCATCGGTCTGTCAGAGATGTAATGTTCATGACTGAAGAGATTCTCTCTATTCTAATGCTTTCCGTTAGAGATATTGCAAGTAGTGGGTTACCCAGAGAGAGAGTGGAGAAATTGAAGAAGACCAAGTATGGGATGAGATATGGACAGGTTTCTCTTACTGCAGCAATGGCTCGTGTCAGGCTTGCAGCTTCACTTGGGGCTACTTTAGTTTGGATATCAGGTGGGTCAAGTTTAGTTCAGTCATTGATCAAAGAAACTCTACCTTCATGGTTTATATCGGGCCATGGTTTGGATCAGGAAGGCAGAGAATCTGGAGGTATGGTTGCTATGCTGGGGGGTTACACTGTTGCATACTTTGCAGTGCTTTGTGGGACATTTGCCTGGGGTGTGGACTCAGCATCACCAGCATCAAAACGGAGACCAAAGGTTCTAGGGGCGCATTTGGAATTTCTTGCTAGTGCACTAGATGGGAAAATTTCGCTTGGTTGTGACTGGGCCATGTGGCGAGCATATGTATCGGGGTTTGTTAGTTTGATGGTGGCTTGCACTCAGAAATGGGTGCTGGAAGTTGATGTTGAAGTCTTGAAGACGCTGAGCAAGGGACTTAGACTTTGGAATGAGGAAGAGTTGGCCCTGGCACTACTGGGACTTGGTGGAGTAGGGGCCATGGGTGCAGCAGCTGAACTAGTTGTTGAATGTGAGTTTTGA

Protein Analysis

1330

Amino Acids

144.87

Weight (kDa)

7.04

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011732)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1865, 2312
AarI CACCTGC 1 cut(s) 1859
AasI GACNNNNNNGTC 1 cut(s) 1399
Acc16I TGCGCA 1 cut(s) 1607
Acc36I ACCTGC 3 cut(s) 1208, 1361, 1859
Acc65I GGTACC 1 cut(s) 2367
AccB1I GGYRCC 3 cut(s) 10, 2367, 3203
AccB7I CCANNNNNTGG 1 cut(s) 3574
AccBSI CCGCTC 2 cut(s) 94, 1288
AccI GTMKAC 1 cut(s) 868
AciI CCGC 8 cut(s) 5, 92, 132, 135, 1037, 1288, 2502, 2793
AclI AACGTT 1 cut(s) 535
AcoI YGGCCR 5 cut(s) 1431, 1592, 2780, 3014, 3214
AcsI RAATTY 9 cut(s) 388, 908, 2306, 2797, 2829, 2989, 3267, 3731, 3759
AcuI CTGAAG 6 cut(s) 671, 1875, 2307, 2493, 2751, 3339
AcvI CACGTG 2 cut(s) 202, 213
AdeI CACNNNGTG 1 cut(s) 2494
AfaI GTAC 6 cut(s) 18, 728, 1519, 2225, 2369, 2415
AfeI AGCGCT 2 cut(s) 2881, 3062
AflII CTTAAG 2 cut(s) 344, 3137
AgeI ACCGGT 1 cut(s) 2843
AhlI ACTAGT 2 cut(s) 1043, 3970
AjiI CACGTC 2 cut(s) 737, 866
AjnI CCWGG 6 cut(s) 463, 1594, 2416, 3262, 3665, 3918
AjuI GAANNNNNNNTTGG 2 cut(s) 2188, 2220
AleI CACNNNNGTG 1 cut(s) 3114
AloI GAACNNNNNNTCC 2 cut(s) 2043, 2075
Alw21I GWGCWC 5 cut(s) 162, 566, 789, 1848, 3748
Alw26I GTCTC 4 cut(s) 181, 1680, 2927, 3697
Alw44I GTGCAC 1 cut(s) 3744
AlwNI CAGNNNCTG 3 cut(s) 778, 2540, 3965
Ama87I CYCGRG 2 cut(s) 224, 788
Aor51HI AGCGCT 2 cut(s) 2881, 3062
ApaI GGGCCC 2 cut(s) 106, 3049
ApaLI GTGCAC 1 cut(s) 3744
ApoI RAATTY 9 cut(s) 388, 908, 2306, 2797, 2829, 2989, 3267, 3731, 3759
ArsI GACNNNNNNTTYG 2 cut(s) 3879, 3911
AseI ATTAAT 2 cut(s) 1092, 1664
AsiGI ACCGGT 1 cut(s) 2843
Asp700I GAANNNNTTC 3 cut(s) 2299, 2641, 3324
Asp718I GGTACC 1 cut(s) 2367
AspLEI GCGC 4 cut(s) 1608, 2882, 3063, 3724
AsuHPI GGTGA 8 cut(s) 52, 302, 1382, 2153, 2262, 2480, 2959, 3678
AsuII TTCGAA 1 cut(s) 2239
AvaI CYCGRG 2 cut(s) 224, 788
AvaII GGWCC 7 cut(s) 49, 383, 605, 1178, 1291, 2216, 2978
BaeGI GKGCMC 9 cut(s) 15, 106, 144, 796, 2632, 2965, 3049, 3208, 3748
BaeI ACNNNNGTAYC 2 cut(s) 2351, 2384
BalI TGGCCA 5 cut(s) 1433, 1594, 2782, 3016, 3216
BamHI GGATCC 2 cut(s) 932, 1165
BanI GGYRCC 3 cut(s) 10, 2367, 3203
BanII GRGCYC 4 cut(s) 106, 162, 566, 3049
BarI GAAGNNNNNNTAC 4 cut(s) 681, 713, 3117, 3149
BauI CACGAG 1 cut(s) 3456
BbrPI CACGTG 2 cut(s) 202, 213
BbsI GAAGAC 7 cut(s) 440, 936, 1650, 2644, 3094, 3410, 3878
Bbv12I GWGCWC 5 cut(s) 162, 566, 789, 1848, 3748
BccI CCATC 8 cut(s) 564, 596, 1016, 2042, 2176, 3035, 3746, 3814
BceAI ACGGC 4 cut(s) 122, 133, 733, 902
BcgI CGANNNNNNTGC 2 cut(s) 3783, 3817
BciT130I CCWGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
BciVI GTATCC 1 cut(s) 1469
BclI TGATCA 4 cut(s) 1372, 1920, 2158, 3531
BcoDI GTCTC 4 cut(s) 181, 1680, 2927, 3697
BcuI ACTAGT 2 cut(s) 1043, 3970
BfmI CTRYAG 7 cut(s) 315, 845, 1082, 1968, 2661, 3123, 3444
BfoI RGCGCY 2 cut(s) 2883, 3064
BfrI CTTAAG 2 cut(s) 344, 3137
BfuAI ACCTGC 3 cut(s) 1208, 1361, 1859
BfuI GTATCC 1 cut(s) 1469
BglI GCCNNNNNGGC 1 cut(s) 3053
BglII AGATCT 1 cut(s) 2674
BlpI GCTNAGC 4 cut(s) 113, 1284, 1729, 3878
Bme1390I CCNGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
Bme18I GGWCC 7 cut(s) 49, 383, 605, 1178, 1291, 2216, 2978
BmeT110I CYCGRG 2 cut(s) 224, 788
BmgBI CACGTC 2 cut(s) 737, 866
BmrFI CCNGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
BmrI ACTGGG 3 cut(s) 2058, 3787, 3938
BmuI ACTGGG 3 cut(s) 2058, 3787, 3938
BpiI GAAGAC 7 cut(s) 440, 936, 1650, 2644, 3094, 3410, 3878
BplI GAGNNNNNCTC 4 cut(s) 2084, 2116, 3314, 3346
Bpu10I CCTNAGC 1 cut(s) 72
Bpu1102I GCTNAGC 4 cut(s) 113, 1284, 1729, 3878
Bpu14I TTCGAA 1 cut(s) 2239
BpuEI CTTGAG 1 cut(s) 533
BsaAI YACGTR 2 cut(s) 202, 213
BsaBI GATNNNNATC 1 cut(s) 2254
BsaI GGTCTC 2 cut(s) 1680, 3697
BsaWI WCCGGW 2 cut(s) 1882, 2843
BsaXI ACNNNNNCTCC 4 cut(s) 548, 578, 3591, 3621
Bse118I RCCGGY 1 cut(s) 2843
Bse1I ACTGG 9 cut(s) 452, 1069, 1323, 1463, 2064, 2661, 3254, 3782, 3933
Bse3DI GCAATG 4 cut(s) 675, 1446, 3196, 3456
Bse8I GATNNNNATC 1 cut(s) 2254
BseBI CCWGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
BseGI GGATG 6 cut(s) 1027, 1780, 2255, 2580, 3027, 3423
BseJI GATNNNNATC 1 cut(s) 2254
BseMI GCAATG 4 cut(s) 675, 1446, 3196, 3456
BseMII CTCAG 8 cut(s) 86, 127, 1275, 1412, 1914, 3693, 3848, 3869
BseNI ACTGG 9 cut(s) 452, 1069, 1323, 1463, 2064, 2661, 3254, 3782, 3933
BseRI GAGGAG 5 cut(s) 86, 161, 266, 1668, 3163
BseSI GKGCMC 9 cut(s) 15, 106, 144, 796, 2632, 2965, 3049, 3208, 3748
BseYI CCCAGC 2 cut(s) 189, 3616
BsgI GTGCAG 2 cut(s) 2007, 3978
BshNI GGYRCC 3 cut(s) 10, 2367, 3203
BshTI ACCGGT 1 cut(s) 2843
BsiHKAI GWGCWC 5 cut(s) 162, 566, 789, 1848, 3748
BsiHKCI CYCGRG 2 cut(s) 224, 788
BsiSI CCGG 2 cut(s) 1883, 2844
BsmAI GTCTC 4 cut(s) 181, 1680, 2927, 3697
BsmBI CGTCTC 1 cut(s) 181
Bso31I GGTCTC 2 cut(s) 1680, 3697
BsoBI CYCGRG 2 cut(s) 224, 788
Bsp119I TTCGAA 1 cut(s) 2239
Bsp120I GGGCCC 2 cut(s) 102, 3045
Bsp1720I GCTNAGC 4 cut(s) 113, 1284, 1729, 3878
Bsp19I CCATGG 5 cut(s) 2632, 2709, 3217, 3568, 3951
BspACI CCGC 8 cut(s) 5, 92, 132, 135, 1037, 1288, 2502, 2793
BspCNI CTCAG 8 cut(s) 85, 126, 1276, 1411, 1913, 3692, 3847, 3870
BspHI TCATGA 3 cut(s) 402, 1375, 3312
BspMAI CTGCAG 4 cut(s) 319, 849, 1086, 3448
BspMI ACCTGC 3 cut(s) 1208, 1361, 1859
BspT104I TTCGAA 1 cut(s) 2239
BspT107I GGYRCC 3 cut(s) 10, 2367, 3203
BspTI CTTAAG 2 cut(s) 344, 3137
BspTNI GGTCTC 2 cut(s) 1680, 3697
BsrBI CCGCTC 2 cut(s) 94, 1288
BsrDI GCAATG 4 cut(s) 675, 1446, 3196, 3456
BsrFI RCCGGY 1 cut(s) 2843
BsrI ACTGG 9 cut(s) 452, 1069, 1323, 1463, 2064, 2661, 3254, 3782, 3933
BssAI RCCGGY 1 cut(s) 2843
BssSI CACGAG 1 cut(s) 3456
Bst2BI CACGAG 1 cut(s) 3456
Bst2UI CCWGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
Bst4CI ACNGT 8 cut(s) 27, 241, 1218, 1272, 1978, 2200, 3100, 3631
Bst6I CTCTTC 5 cut(s) 1251, 1773, 2290, 3315, 3903
BstAFI CTTAAG 2 cut(s) 344, 3137
BstAPI GCANNNNNTGC 2 cut(s) 665, 3641
BstBAI YACGTR 2 cut(s) 202, 213
BstBI TTCGAA 1 cut(s) 2239
BstDSI CCRYGG 6 cut(s) 2199, 2632, 2709, 3217, 3568, 3951
BstEII GGTNACC 1 cut(s) 3372
BstENI CCTNNNNNAGG 2 cut(s) 227, 2085
BstF5I GGATG 6 cut(s) 1027, 1780, 2255, 2580, 3027, 3423
BstH2I RGCGCY 2 cut(s) 2883, 3064
BstHHI GCGC 4 cut(s) 1608, 2882, 3063, 3724
BstMAI GTCTC 4 cut(s) 181, 1680, 2927, 3697
BstNI CCWGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
BstNSI RCATGY 3 cut(s) 1213, 1507, 3025
BstPI GGTNACC 1 cut(s) 3372
BstSCI CCNGG 6 cut(s) 463, 1594, 2416, 3262, 3665, 3918
BstSFI CTRYAG 7 cut(s) 315, 845, 1082, 1968, 2661, 3123, 3444
BstSLI GKGCMC 9 cut(s) 15, 106, 144, 796, 2632, 2965, 3049, 3208, 3748
BstV2I GAAGAC 7 cut(s) 440, 936, 1650, 2644, 3094, 3410, 3878
BstX2I RGATCY 5 cut(s) 407, 932, 1165, 2326, 2674
BstXI CCANNNNNNTGG 4 cut(s) 443, 2338, 3224, 3239
BstYI RGATCY 5 cut(s) 407, 932, 1165, 2326, 2674
BsuI GTATCC 1 cut(s) 1469
BtgI CCRYGG 6 cut(s) 2199, 2632, 2709, 3217, 3568, 3951
BtrI CACGTC 2 cut(s) 737, 866
BtsCI GGATG 6 cut(s) 1027, 1780, 2255, 2580, 3027, 3423
BtsI GCAGTG 1 cut(s) 3651
BtsIMutI CAGTG 4 cut(s) 459, 1771, 3627, 3651
BveI ACCTGC 3 cut(s) 1208, 1361, 1859
CaiI CAGNNNCTG 3 cut(s) 778, 2540, 3965
CciI TCATGA 3 cut(s) 402, 1375, 3312
CfoI GCGC 4 cut(s) 1608, 2882, 3063, 3724
Cfr10I RCCGGY 1 cut(s) 2843
CseI GACGC 4 cut(s) 1133, 1322, 1520, 3883
Csp6I GTAC 6 cut(s) 17, 727, 1518, 2224, 2368, 2414
CspAI ACCGGT 1 cut(s) 2843
CspCI CAANNNNNGTGG 2 cut(s) 2830, 2865
CviQI GTAC 6 cut(s) 17, 727, 1518, 2224, 2368, 2414
DraIII CACNNNGTG 1 cut(s) 2494
DrdI GACNNNNNNGTC 1 cut(s) 1399
DseDI GACNNNNNNGTC 1 cut(s) 1399
EaeI YGGCCR 5 cut(s) 1431, 1592, 2780, 3014, 3214
Eam1104I CTCTTC 5 cut(s) 1251, 1773, 2290, 3315, 3903
EarI CTCTTC 5 cut(s) 1251, 1773, 2290, 3315, 3903
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 2 cut(s) 160, 564
Eco147I AGGCCT 3 cut(s) 648, 1382, 1458
Eco24I GRGCYC 4 cut(s) 106, 162, 566, 3049
Eco31I GGTCTC 2 cut(s) 1680, 3697
Eco32I GATATC 2 cut(s) 1788, 3501
Eco47I GGWCC 7 cut(s) 49, 383, 605, 1178, 1291, 2216, 2978
Eco47III AGCGCT 2 cut(s) 2881, 3062
Eco53kI GAGCTC 2 cut(s) 160, 564
Eco57I CTGAAG 6 cut(s) 671, 1875, 2307, 2493, 2751, 3339
Eco72I CACGTG 2 cut(s) 202, 213
Eco88I CYCGRG 2 cut(s) 224, 788
Eco91I GGTNACC 1 cut(s) 3372
EcoICRI GAGCTC 2 cut(s) 160, 564
EcoNI CCTNNNNNAGG 2 cut(s) 227, 2085
EcoO109I RGGNCCY 4 cut(s) 103, 1178, 1291, 1646
EcoO65I GGTNACC 1 cut(s) 3372
EcoRI GAATTC 2 cut(s) 2989, 3267
EcoRII CCWGG 6 cut(s) 463, 1594, 2416, 3262, 3665, 3918
EcoRV GATATC 2 cut(s) 1788, 3501
EcoT22I ATGCAT 3 cut(s) 1117, 1211, 3023
EcoT38I GRGCYC 4 cut(s) 106, 162, 566, 3049
Esp3I CGTCTC 1 cut(s) 181
FalI AAGNNNNNCTT 2 cut(s) 3131, 3163
FauI CCCGC 4 cut(s) 99, 1030, 1281, 2509
FauNDI CATATG 2 cut(s) 500, 3796
FbaI TGATCA 4 cut(s) 1372, 1920, 2158, 3531
FblI GTMKAC 1 cut(s) 868
FokI GGATG 6 cut(s) 1034, 1787, 2242, 2567, 3014, 3430
FriOI GRGCYC 4 cut(s) 106, 162, 566, 3049
FspI TGCGCA 1 cut(s) 1607
GlaI GCGC 4 cut(s) 1607, 2881, 3062, 3723
GsaI CCCAGC 2 cut(s) 193, 3620
HaeII RGCGCY 2 cut(s) 2883, 3064
HapII CCGG 2 cut(s) 1883, 2844
HgaI GACGC 4 cut(s) 1133, 1322, 1520, 3883
HhaI GCGC 4 cut(s) 1608, 2882, 3063, 3724
Hin6I GCGC 4 cut(s) 1606, 2880, 3061, 3722
HinP1I GCGC 4 cut(s) 1606, 2880, 3061, 3722
HincII GTYRAC 1 cut(s) 869
HindII GTYRAC 1 cut(s) 869
HindIII AAGCTT 1 cut(s) 2949
HpaII CCGG 2 cut(s) 1883, 2844
HphI GGTGA 8 cut(s) 52, 302, 1382, 2153, 2262, 2480, 2959, 3678
Hpy166II GTNNAC 7 cut(s) 461, 869, 1070, 2654, 3184, 3676, 3746
Hpy8I GTNNAC 7 cut(s) 461, 869, 1070, 2654, 3184, 3676, 3746
Hpy99I CGWCG 5 cut(s) 31, 158, 741, 870, 1338
HpyCH4III ACNGT 8 cut(s) 27, 241, 1218, 1272, 1978, 2200, 3100, 3631
HpyCH4IV ACGT 7 cut(s) 201, 212, 535, 736, 865, 2959, 3180
HpySE526I ACGT 7 cut(s) 201, 212, 535, 736, 865, 2959, 3180
HspAI GCGC 4 cut(s) 1606, 2880, 3061, 3722
KflI GGGWCCC 1 cut(s) 1291
KpnI GGTACC 1 cut(s) 2371
Ksp22I TGATCA 4 cut(s) 1372, 1920, 2158, 3531
LmnI GCTCC 8 cut(s) 99, 122, 569, 965, 1843, 2877, 2887, 3176
MaeII ACGT 7 cut(s) 201, 212, 535, 736, 865, 2959, 3180
MbiI CCGCTC 2 cut(s) 94, 1288
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 5 cut(s) 407, 932, 1165, 2326, 2674
MlsI TGGCCA 5 cut(s) 1433, 1594, 2782, 3016, 3216
MluNI TGGCCA 5 cut(s) 1433, 1594, 2782, 3016, 3216
MlyI GAGTC 8 cut(s) 38, 40, 845, 2071, 2416, 2491, 2555, 3671
MmeI TCCRAC 3 cut(s) 79, 719, 1811
Mox20I TGGCCA 5 cut(s) 1433, 1594, 2782, 3016, 3216
Mph1103I ATGCAT 3 cut(s) 1117, 1211, 3023
MroXI GAANNNNTTC 3 cut(s) 2299, 2641, 3324
MscI TGGCCA 5 cut(s) 1433, 1594, 2782, 3016, 3216
MslI CAYNNNNRTG 2 cut(s) 2336, 3114
Msp20I TGGCCA 5 cut(s) 1433, 1594, 2782, 3016, 3216
MspA1I CMGCKG 5 cut(s) 778, 850, 2021, 2729, 3965
MspCI CTTAAG 2 cut(s) 344, 3137
MspI CCGG 2 cut(s) 1883, 2844
MspR9I CCNGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
NcoI CCATGG 5 cut(s) 2632, 2709, 3217, 3568, 3951
NdeI CATATG 2 cut(s) 500, 3796
NmuCI GTSAC 5 cut(s) 750, 2486, 2494, 3068, 3773
NsbI TGCGCA 1 cut(s) 1607
NsiI ATGCAT 3 cut(s) 1117, 1211, 3023
NspI RCATGY 3 cut(s) 1213, 1507, 3025
NspV TTCGAA 1 cut(s) 2239
OliI CACNNNNGTG 1 cut(s) 3114
PaeI GCATGC 2 cut(s) 1213, 3025
PaeR7I CTCGAG 1 cut(s) 224
PagI TCATGA 3 cut(s) 402, 1375, 3312
PaqCI CACCTGC 1 cut(s) 1859
PceI AGGCCT 3 cut(s) 648, 1382, 1458
PcsI WCGNNNNNNNCGW 1 cut(s) 2245
PdmI GAANNNNTTC 3 cut(s) 2299, 2641, 3324
PfeI GAWTC 6 cut(s) 860, 877, 1484, 2342, 3325, 3593
PflFI GACNNNGTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 3574
PinAI ACCGGT 1 cut(s) 2843
PleI GAGTC 8 cut(s) 38, 39, 844, 2071, 2416, 2491, 2554, 3671
PmaCI CACGTG 2 cut(s) 202, 213
PmlI CACGTG 2 cut(s) 202, 213
PpsI GAGTC 8 cut(s) 38, 39, 844, 2071, 2416, 2491, 2554, 3671
Ppu21I YACGTR 2 cut(s) 202, 213
PpuMI RGGWCCY 2 cut(s) 1178, 1291
PshBI ATTAAT 2 cut(s) 1092, 1664
PsiI TTATAA 2 cut(s) 1865, 2312
Psp124BI GAGCTC 2 cut(s) 162, 566
Psp1406I AACGTT 1 cut(s) 535
Psp5II RGGWCCY 2 cut(s) 1178, 1291
Psp6I CCWGG 6 cut(s) 463, 1594, 2416, 3262, 3665, 3918
PspCI CACGTG 2 cut(s) 202, 213
PspEI GGTNACC 1 cut(s) 3372
PspFI CCCAGC 2 cut(s) 189, 3616
PspGI CCWGG 6 cut(s) 463, 1594, 2416, 3262, 3665, 3918
PspOMI GGGCCC 2 cut(s) 102, 3045
PspPPI RGGWCCY 2 cut(s) 1178, 1291
PstI CTGCAG 4 cut(s) 319, 849, 1086, 3448
PstNI CAGNNNCTG 3 cut(s) 778, 2540, 3965
PsuI RGATCY 5 cut(s) 407, 932, 1165, 2326, 2674
PsyI GACNNNGTC 1 cut(s) 47
PvuII CAGCTG 5 cut(s) 778, 850, 2021, 2729, 3965
RsaI GTAC 6 cut(s) 18, 728, 1519, 2225, 2369, 2415
RsaNI GTAC 6 cut(s) 17, 727, 1518, 2224, 2368, 2414
RseI CAYNNNNRTG 2 cut(s) 2336, 3114
SacI GAGCTC 2 cut(s) 162, 566
SalI GTCGAC 1 cut(s) 867
SchI GAGTC 8 cut(s) 38, 40, 845, 2071, 2416, 2491, 2555, 3671
ScrFI CCNGG 6 cut(s) 465, 1596, 2418, 3264, 3667, 3920
SfcI CTRYAG 7 cut(s) 315, 845, 1082, 1968, 2661, 3123, 3444
Sfr274I CTCGAG 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 2239
SgrAI CRCCGGYG 1 cut(s) 2843
SinI GGWCC 7 cut(s) 49, 383, 605, 1178, 1291, 2216, 2978
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 2336, 3114
SmlI CTYRAG 4 cut(s) 224, 344, 512, 3137
SmoI CTYRAG 4 cut(s) 224, 344, 512, 3137
SpeI ACTAGT 2 cut(s) 1043, 3970
SphI GCATGC 2 cut(s) 1213, 3025
SseBI AGGCCT 3 cut(s) 648, 1382, 1458
SsiI CCGC 8 cut(s) 5, 92, 132, 135, 1037, 1288, 2502, 2793
SspI AATATT 1 cut(s) 1246
SstI GAGCTC 2 cut(s) 162, 566
StuI AGGCCT 3 cut(s) 648, 1382, 1458
StyD4I CCNGG 6 cut(s) 463, 1594, 2416, 3262, 3665, 3918
TaaI ACNGT 8 cut(s) 27, 241, 1218, 1272, 1978, 2200, 3100, 3631
TaiI ACGT 7 cut(s) 204, 215, 538, 739, 868, 2962, 3183
TaqII GACCGA 3 cut(s) 37, 2966, 3279
TatI WGTACW 1 cut(s) 726
TauI GCSGC 2 cut(s) 137, 2795
TfiI GAWTC 6 cut(s) 860, 877, 1484, 2342, 3325, 3593
TscAI CASTG 4 cut(s) 459, 1771, 3634, 3651
TseFI GTSAC 5 cut(s) 750, 2486, 2494, 3068, 3773
Tsp45I GTSAC 5 cut(s) 750, 2486, 2494, 3068, 3773
TspGWI ACGGA 3 cut(s) 142, 3337, 3715
TspRI CASTG 4 cut(s) 459, 1771, 3634, 3651
Tth111I GACNNNGTC 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 3574
Vha464I CTTAAG 2 cut(s) 344, 3137
VneI GTGCAC 1 cut(s) 3744
VpaK11BI GGWCC 7 cut(s) 49, 383, 605, 1178, 1291, 2216, 2978
VspI ATTAAT 2 cut(s) 1092, 1664
XagI CCTNNNNNAGG 2 cut(s) 227, 2085
XapI RAATTY 9 cut(s) 388, 908, 2306, 2797, 2829, 2989, 3267, 3731, 3759
XceI RCATGY 3 cut(s) 1213, 1507, 3025
XcmI CCANNNNNNNNNTGG 2 cut(s) 3239, 3385
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 868
XmnI GAANNNNTTC 3 cut(s) 2299, 2641, 3324
Zsp2I ATGCAT 3 cut(s) 1117, 1211, 3023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.