Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011732

Physical Location & Seq

Genomic Coordinates Reverse (-)

35320665 .. 35320991

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATTTTGATGATTTCATGCATGGATCTTCTTTTCTCATTACAGTTACATAATGTTGTAATCGAAAGTGACTGCTTAGAAGCACTTAATGAAGTTTCCAGCCCTCAATATGAGTTACTAGCCAATGGAGGTTTGATTGATGATATAAAACAAAGTTGGAGAATGCTGCAAGGTGTGAAAATTCAACACACTCCTAGATCATGTAATGCGGTGGCTCACCGCCTAGCTGCTTTAGGTTTTGAGGCAGAGCAAGGTTTTGTTTGGTTTGAACAAGCACCTGAAGATATTCGAGATGTGCTTCTACATGATTGTAATCAACTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006725 GO:0008150 GO:0008152 GO:0009698 GO:0009987 GO:0016020 GO:0016592 GO:0019222 GO:0019748 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043455 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:0071704 GO:1901360 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

4.57

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	8 - 77	1.5e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48110
fragaria_vesca	FvH4_2g23980 FvH4_2g23980
malus_domestica	MD03G1269000.v1.1 MD11G1289800.v1.1
prunus_persica	Prupe.8G245000_v2.0.a1
pyrus_communis	pycom03g21480 pycom11g25720
rosa_chinensis	RchiOBHm_Chr6g0291641
rosa_laevigata	RLG00000012100
rosa_multiflora	Rmu_co8449785.1_g000001 Rmu_sc0002226.1_g000015
rosa_roxburghii	Rroxscaffold_7G00175900
rosa_rugosa	Rorug06G0220600
rosa_samantha	Rh6AG333200 Rh6BG340000 Rh6CG346300 Rh6DG333500
rosa_wichuraiana	Rw6G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	209, 220
AclWI	GGATC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	185, 269
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	166, 227
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	153, 214
BfaI	CTAG	3 cut(s)	119, 195, 224
BisI	GCNGC	2 cut(s)	167, 228
BlsI	GCNGC	2 cut(s)	168, 229
BsaBI	GATNNNNATC	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	312
BseJI	GATNNNNATC	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	153, 214
BsmI	GAATGC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	25, 197
BspACI	CCGC	2 cut(s)	209, 220
BspPI	GGATC	1 cut(s)	33
BssMI	GATC	2 cut(s)	25, 197
Bst4CI	ACNGT	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	76, 320
BstKTI	GATC	2 cut(s)	28, 200
BstMBI	GATC	2 cut(s)	25, 197
BstV1I	GCAGC	2 cut(s)	153, 214
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
CviAII	CATG	4 cut(s)	18, 22, 201, 305
CviJI	RGCY	4 cut(s)	102, 122, 215, 227
CviKI_1	RGCY	4 cut(s)	102, 122, 215, 227
DdeI	CTNAG	2 cut(s)	76, 320
DpnI	GATC	2 cut(s)	27, 199
DpnII	GATC	2 cut(s)	25, 197
Eco57I	CTGAAG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	4 cut(s)	21, 25, 204, 308
FaiI	YATR	7 cut(s)	19, 23, 51, 111, 146, 202, 306
FatI	CATG	4 cut(s)	17, 21, 200, 304
Fnu4HI	GCNGC	2 cut(s)	167, 228
Fsp4HI	GCNGC	2 cut(s)	167, 228
FspBI	CTAG	3 cut(s)	119, 195, 224
GluI	GCNGC	2 cut(s)	167, 228
Hin1II	CATG	4 cut(s)	21, 25, 204, 308
HphI	GGTGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	21, 169
HpyF3I	CTNAG	2 cut(s)	76, 320
Hsp92II	CATG	4 cut(s)	21, 25, 204, 308
Kzo9I	GATC	2 cut(s)	25, 197
LpnPI	CCDG	2 cut(s)	112, 291
Lsp1109I	GCAGC	2 cut(s)	153, 214
MaeI	CTAG	3 cut(s)	119, 195, 224
MaeIII	GTNAC	3 cut(s)	45, 68, 114
MalI	GATC	2 cut(s)	27, 199
MboI	GATC	2 cut(s)	25, 197
MboII	GAAGA	2 cut(s)	20, 293
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	114, 122, 235
Mph1103I	ATGCAT	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	168
NdeII	GATC	2 cut(s)	25, 197
NlaIII	CATG	4 cut(s)	21, 25, 204, 308
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	23
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	168, 229
PsuI	RGATCY	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	167, 228
Sau3AI	GATC	2 cut(s)	25, 197
SetI	ASST	6 cut(s)	133, 175, 229, 238, 256, 280
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	2 cut(s)	209, 220
SspMI	CTAG	3 cut(s)	119, 195, 224
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	63, 289
TasI	AATT	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	166, 227
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	6, 105
XapI	RAATTY	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	3 cut(s)	119, 195, 224
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.