Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Forward (+)

19679730 .. 19681546

Gene Structure 1817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G48120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCGGCGACGTCGCTGGTTCTGACGTGCGCATCCCCTCTATTCAGCAGCCCTCGGGTTATTTCTGCTACGAAGAAGCTGACTACAGAGTTGTCGATTTCTACAGCTAAATTCCGAAGAAGATGCTCGGGAAACAATGATGAAGTGCTTCTAGAAGGAATGCCACCGGAGTATTACGATGATGAATGGCAAGCTCGACAGAGAGAGAAGACCAAAGAACTGCGGCGGATGCAGCGGGAGGAAGAAGAAGAAGAGGAGAGAAAGATTGAAGAATACCGTGAAATTGGCACGAGGTTGAAGGAATTTCCCGAGCAAGACTTAAGGAAAGCCAGAAAGCTCGTCTCCAGCTTCATCAGAGCTGCCGAGGAAGTCGAAGAGAGAATTGAAGAAGCAGCCGAGAAAGGAGAACTTGACGAGCTTGTCCTCATGATCATATGGAACCGGCTTGACCTTGCTAGGCGCGATGATGAGAAGGACGCCATCAGAAGTCTTGATCTTTTGTATAGAAGAGTCGAGACAGAGATCTTAAAACGGCAAGCAAGTCCTGCAATGAAACTGCTGAATGATCTTCTAAATATGCATGATGGCTTTGAAGACGATGCTTGGCTCAAGGACTGCAGAAAACGAATGGCTGAGACCTTCCCCCGAGAAGACCCCTTCAGCATTCTAATGCCACCGGGATTCGACATTGATATGCATCAAGGACAGTTGCGACCGCCCATTGAGACTGAGACAGACAACACCCTTCTGAGAGTAGACTTTGTAAGAGAAGTGGATGCACTGCTACAGGAAGTGAGGATAGAGGAAGACGCTACAACTGGTAGCAAAGGAGAAGGGCTTGATCCTGAAGCTATAGCACTTAAGTTTAAGCAACAGGAGAAGCAACGAACCATCCGCCAAATTGAAGCCATTCTTGATTTAGCCCTCAACTTGAAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

36.61

Weight (kDa)

4.91

Isoelectric Point (pI)

71.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AatII	GACGTC	1 cut(s)	14
Acc16I	TGCGCA	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	462
AciI	CCGC	6 cut(s)	5, 223, 226, 235, 716, 895
AclWI	GGATC	1 cut(s)	836
AcsI	RAATTY	2 cut(s)	110, 302
AcuI	CTGAAG	2 cut(s)	643, 867
AcyI	GRCGYC	2 cut(s)	11, 477
AflII	CTTAAG	2 cut(s)	319, 860
AgsI	TTSAA	6 cut(s)	269, 298, 386, 593, 905, 934
AjiI	CACGTC	1 cut(s)	27
AluBI	AGCT	8 cut(s)	79, 107, 194, 337, 348, 359, 418, 851
AluI	AGCT	8 cut(s)	79, 107, 194, 337, 348, 359, 418, 851
Alw26I	GTCTC	5 cut(s)	346, 509, 629, 719, 725
AlwI	GGATC	1 cut(s)	836
Ama87I	CYCGRG	4 cut(s)	54, 127, 308, 645
ApeKI	GCWGC	4 cut(s)	48, 232, 359, 392
ApoI	RAATTY	2 cut(s)	110, 302
Asp700I	GAANNNNTTC	2 cut(s)	147, 909
AspLEI	GCGC	2 cut(s)	32, 462
AsuC2I	CCSGG	1 cut(s)	678
AvaI	CYCGRG	4 cut(s)	54, 127, 308, 645
BauI	CACGAG	1 cut(s)	289
BbsI	GAAGAC	4 cut(s)	215, 600, 657, 813
BbvI	GCAGC	4 cut(s)	60, 244, 346, 404
BccI	CCATC	3 cut(s)	488, 578, 899
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BclI	TGATCA	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	5 cut(s)	346, 509, 629, 719, 725
BfaI	CTAG	2 cut(s)	152, 456
BfmI	CTRYAG	5 cut(s)	84, 102, 616, 785, 852
BfrI	CTTAAG	2 cut(s)	319, 860
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	6 cut(s)	6, 49, 224, 233, 360, 393
BlsI	GCNGC	6 cut(s)	7, 50, 225, 234, 361, 394
Bme1390I	CCNGG	1 cut(s)	678
BmeT110I	CYCGRG	4 cut(s)	54, 127, 308, 645
BmgBI	CACGTC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	6 cut(s)	41, 113, 219, 589, 706, 766
BpiI	GAAGAC	4 cut(s)	215, 600, 657, 813
BpmI	CTGGAG	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	2 cut(s)	11, 477
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	53, 363
BsaWI	WCCGGW	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	53, 363
BseGI	GGATG	4 cut(s)	32, 234, 781, 891
BseJI	GATNNNNATC	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	624, 720, 740
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	4 cut(s)	60, 244, 346, 404
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	716
BsiEI	CGRYCG	1 cut(s)	716
BsiHKCI	CYCGRG	4 cut(s)	54, 127, 308, 645
BsiSI	CCGG	3 cut(s)	167, 442, 677
BsmAI	GTCTC	5 cut(s)	346, 509, 629, 719, 725
BsmBI	CGTCTC	1 cut(s)	346
BsmI	GAATGC	2 cut(s)	165, 663
Bso31I	GGTCTC	1 cut(s)	629
BsoBI	CYCGRG	4 cut(s)	54, 127, 308, 645
Bsp143I	GATC	5 cut(s)	429, 493, 522, 565, 841
BspACI	CCGC	6 cut(s)	5, 223, 226, 235, 716, 895
BspCNI	CTCAG	3 cut(s)	625, 721, 741
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	440
BspMAI	CTGCAG	1 cut(s)	620
BspPI	GGATC	1 cut(s)	836
BspTI	CTTAAG	2 cut(s)	319, 860
BspTNI	GGTCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	823
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	53, 363
BssMI	GATC	5 cut(s)	429, 493, 522, 565, 841
BssNI	GRCGYC	2 cut(s)	11, 477
BssSI	CACGAG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	278, 708
Bst6I	CTCTTC	3 cut(s)	246, 369, 502
BstACI	GRCGYC	2 cut(s)	11, 477
BstAFI	CTTAAG	2 cut(s)	319, 860
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	192, 537
BstDEI	CTNAG	3 cut(s)	633, 729, 749
BstF5I	GGATG	4 cut(s)	32, 234, 781, 891
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	32, 462
BstKTI	GATC	5 cut(s)	432, 496, 525, 568, 844
BstMAI	GTCTC	5 cut(s)	346, 509, 629, 719, 725
BstMBI	GATC	5 cut(s)	429, 493, 522, 565, 841
BstMCI	CGRYCG	1 cut(s)	716
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 232, 545
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	5 cut(s)	84, 102, 616, 785, 852
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	60, 244, 346, 404
BstV2I	GAAGAC	4 cut(s)	215, 600, 657, 813
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	32, 234, 781, 891
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	1 cut(s)	779
Cac8I	GCNNGC	2 cut(s)	192, 537
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	2 cut(s)	32, 462
Cfr10I	RCCGGY	1 cut(s)	441
CseI	GACGC	2 cut(s)	485, 818
CviAII	CATG	2 cut(s)	427, 581
DdeI	CTNAG	3 cut(s)	633, 729, 749
DpnI	GATC	5 cut(s)	431, 495, 524, 567, 843
DpnII	GATC	5 cut(s)	429, 493, 522, 565, 841
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eam1104I	CTCTTC	3 cut(s)	246, 369, 502
EarI	CTCTTC	3 cut(s)	246, 369, 502
EciI	GGCGGA	2 cut(s)	241, 884
Eco31I	GGTCTC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	643, 867
Eco88I	CYCGRG	4 cut(s)	54, 127, 308, 645
EcoT22I	ATGCAT	2 cut(s)	582, 699
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	2 cut(s)	430, 584
FaiI	YATR	8 cut(s)	428, 434, 436, 504, 578, 582, 695, 854
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 897, 929
FatI	CATG	2 cut(s)	426, 580
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	6 cut(s)	6, 49, 224, 233, 360, 393
FokI	GGATG	4 cut(s)	19, 241, 788, 878
Fsp4HI	GCNGC	6 cut(s)	6, 49, 224, 233, 360, 393
FspAI	RTGCGCAY	1 cut(s)	31
FspBI	CTAG	2 cut(s)	152, 456
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	2 cut(s)	31, 461
GluI	GCNGC	6 cut(s)	6, 49, 224, 233, 360, 393
GsuI	CTGGAG	1 cut(s)	328
HapII	CCGG	3 cut(s)	167, 442, 677
HgaI	GACGC	2 cut(s)	485, 818
HhaI	GCGC	2 cut(s)	32, 462
Hin1I	GRCGYC	2 cut(s)	11, 477
Hin1II	CATG	2 cut(s)	430, 584
Hin6I	GCGC	2 cut(s)	30, 460
HinP1I	GCGC	2 cut(s)	30, 460
HinfI	GANTC	2 cut(s)	510, 681
HpaII	CCGG	3 cut(s)	167, 442, 677
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	5 cut(s)	24, 116, 356, 485, 750
Hpy188III	TCNNGA	8 cut(s)	129, 152, 308, 427, 491, 514, 845, 914
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	2 cut(s)	13, 16
HpyAV	CCTTC	7 cut(s)	149, 292, 466, 649, 667, 755, 827
HpyCH4III	ACNGT	2 cut(s)	278, 708
HpyCH4IV	ACGT	2 cut(s)	11, 26
HpyCH4V	TGCA	6 cut(s)	232, 548, 580, 618, 697, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 232, 545
HpyF3I	CTNAG	3 cut(s)	633, 729, 749
HpySE526I	ACGT	2 cut(s)	11, 26
Hsp92I	GRCGYC	2 cut(s)	11, 477
Hsp92II	CATG	2 cut(s)	430, 584
HspAI	GCGC	2 cut(s)	30, 460
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	429, 493, 522, 565, 841
Lsp1109I	GCAGC	4 cut(s)	60, 244, 346, 404
LweI	GCATC	6 cut(s)	41, 113, 219, 589, 706, 766
MaeI	CTAG	2 cut(s)	152, 456
MaeII	ACGT	2 cut(s)	11, 26
MalI	GATC	5 cut(s)	431, 495, 524, 567, 843
MboI	GATC	5 cut(s)	429, 493, 522, 565, 841
MflI	RGATCY	1 cut(s)	522
MluCI	AATT	5 cut(s)	110, 282, 302, 381, 900
MlyI	GAGTC	1 cut(s)	519
Mph1103I	ATGCAT	2 cut(s)	582, 699
MroXI	GAANNNNTTC	2 cut(s)	147, 909
MseI	TTAA	4 cut(s)	320, 527, 861, 867
MslI	CAYNNNNRTG	2 cut(s)	668, 692
MspA1I	CMGCKG	1 cut(s)	235
MspCI	CTTAAG	2 cut(s)	319, 860
MspI	CCGG	3 cut(s)	167, 442, 677
MspR9I	CCNGG	1 cut(s)	678
Mva1269I	GAATGC	2 cut(s)	165, 663
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	229, 232, 545
NciI	CCSGG	1 cut(s)	678
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	5 cut(s)	429, 493, 522, 565, 841
NlaIII	CATG	2 cut(s)	430, 584
NlaIV	GGNNCC	1 cut(s)	440
NmeAIII	GCCGAG	2 cut(s)	388, 421
NsbI	TGCGCA	1 cut(s)	31
NsiI	ATGCAT	2 cut(s)	582, 699
PagI	TCATGA	1 cut(s)	426
PctI	GAATGC	2 cut(s)	165, 663
PdmI	GAANNNNTTC	2 cut(s)	147, 909
PfeI	GAWTC	1 cut(s)	681
PkrI	GCNGC	6 cut(s)	7, 50, 225, 234, 361, 394
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	522
RseI	CAYNNNNRTG	2 cut(s)	668, 692
SaqAI	TTAA	4 cut(s)	320, 527, 861, 867
SatI	GCNGC	6 cut(s)	6, 49, 224, 233, 360, 393
Sau3AI	GATC	5 cut(s)	429, 493, 522, 565, 841
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	1 cut(s)	678
SfaNI	GCATC	6 cut(s)	41, 113, 219, 589, 706, 766
SfcI	CTRYAG	5 cut(s)	84, 102, 616, 785, 852
SmiMI	CAYNNNNRTG	2 cut(s)	668, 692
SmlI	CTYRAG	3 cut(s)	319, 608, 860
SmoI	CTYRAG	3 cut(s)	319, 608, 860
Sse9I	AATT	5 cut(s)	110, 282, 302, 381, 900
SsiI	CCGC	6 cut(s)	5, 223, 226, 235, 716, 895
SspMI	CTAG	2 cut(s)	152, 456
StyD4I	CCNGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	278, 708
TaiI	ACGT	2 cut(s)	14, 29
TaqI	TCGA	5 cut(s)	95, 196, 372, 513, 684
TasI	AATT	5 cut(s)	110, 282, 302, 381, 900
TauI	GCSGC	2 cut(s)	8, 226
TfiI	GAWTC	1 cut(s)	681
Tru1I	TTAA	4 cut(s)	320, 527, 861, 867
Tru9I	TTAA	4 cut(s)	320, 527, 861, 867
TscAI	CASTG	1 cut(s)	786
TseI	GCWGC	4 cut(s)	48, 232, 359, 392
TspDTI	ATGAA	4 cut(s)	156, 198, 340, 566
TspRI	CASTG	1 cut(s)	786
Vha464I	CTTAAG	2 cut(s)	319, 860
XapI	RAATTY	2 cut(s)	110, 302
XbaI	TCTAGA	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	147, 909
XspI	CTAG	2 cut(s)	152, 456
ZraI	GACGTC	1 cut(s)	12
Zsp2I	ATGCAT	2 cut(s)	582, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.