Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Reverse (-)

5563611 .. 5567493

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGGCGAGGGTGTTCCCGCTTACTAGCACATCACTTCCATTTTCACTTTTTCCATCGTCTTCAACCTATCCAAGTCTTTGGTTCTCGCCTTTAAGACCCACATATGCACCTGGCACAGTCTTAAGGAGGAGCATGAAAAAGGAAGAGCCACTATTAGAAGGTCTTCCGAAAGAGTACTACGATGATGAATGGCAATCACAACAAAGGGAGAAAACTAAGGAGTTTCATCGAAGACGTCAAGAGGAGGACGAAGAGGAGGAGAGAAAGATTGAAGAGTACCGTGAGATCGGCATGAGATTGAAGGATTATCCAGAAGAAGATGTTCGGAAAGCTCGGAAATTGATTTCCAGCTTTATTAGAGCGGCTGAAGAAGTGGAAGAGAAAATTGAGGAAGCTGGTGAGAAAGGGGAACTGACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGACCTCGCTCGACGGGATGATGTTATTAGAAGTCTTGATTTGCTATACAGAAGGATTGAGGCTGAGATTTTGAAACAGGAGGCGTCACCTGCCATGCGACTTCTCAACGATCTTTTAAATATGCATGATGGTTTTGATGATGAAGGGTGGCAGAAGGAATGTAAAAAGCGCATGATCGACACATTTCCACGTGAGGATCCATTTAGCATTTTAGTTCCAGAAGGATTTGACATTGATAAGCATGAGGGGCCTCTTCGGCCACCGCTTGAAGTAGATGACGCTCTATTGAGGGTAGACTTTGTAAGAGAGGTTGATGCACTGCTACAAGAGGTTCGGGCTGAGCAAAGCGAAGTACAAATTACACAAGGGCTTGATCCTGAATCCATTGCAAGTAGATTGAAGCAGCAGGAGAAGCAACGGGCCATACGGCTGAGTCAGAGTCAATGGAAAGCTGCAGAGAACCACTGCAACATGGCAGAACTACGGCGGTCACCATCAGAAGCCCCAAAAGTTGCCGCCATTTCTCGAGTCATATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

38.9

Weight (kDa)

5.02

Isoelectric Point (pI)

82.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	747
AciI	CCGC	5 cut(s)	20, 365, 716, 940, 969
AclWI	GGATC	3 cut(s)	644, 657, 821
AcoI	YGGCCR	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	644
AcyI	GRCGYC	2 cut(s)	238, 536
AfaI	GTAC	3 cut(s)	179, 281, 807
AflII	CTTAAG	1 cut(s)	124
AgsI	TTSAA	6 cut(s)	66, 275, 304, 526, 722, 853
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	335, 354, 398, 905
AluI	AGCT	4 cut(s)	335, 354, 398, 905
AlwI	GGATC	3 cut(s)	644, 657, 821
Ama87I	CYCGRG	1 cut(s)	978
AoxI	GGCC	3 cut(s)	701, 710, 873
ApeKI	GCWGC	2 cut(s)	856, 905
Asp700I	GAANNNNTTC	2 cut(s)	165, 324
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	701, 873
AsuHPI	GGTGA	3 cut(s)	413, 531, 936
AvaI	CYCGRG	1 cut(s)	978
BamHI	GGATCC	1 cut(s)	649
BbrPI	CACGTG	1 cut(s)	644
BbsI	GAAGAC	3 cut(s)	54, 158, 241
BbvI	GCAGC	2 cut(s)	868, 892
BccI	CCATC	4 cut(s)	64, 427, 575, 955
BceAI	ACGGC	2 cut(s)	896, 953
BciT130I	CCWGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	906
BfrI	CTTAAG	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	709
BisI	GCNGC	4 cut(s)	366, 857, 906, 969
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	4 cut(s)	367, 858, 907, 970
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	978
BmgT120I	GGNCC	2 cut(s)	701, 873
BmiI	GGNNCC	2 cut(s)	651, 702
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	757
BpiI	GAAGAC	3 cut(s)	54, 158, 241
Bpu1102I	GCTNAGC	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	644
BsaHI	GRCGYC	2 cut(s)	238, 536
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	3 cut(s)	507, 783, 875
BseRI	GAGGAG	4 cut(s)	145, 260, 272, 275
BseXI	GCAGC	2 cut(s)	868, 892
BshFI	GGCC	3 cut(s)	703, 712, 875
BsiHKCI	CYCGRG	1 cut(s)	978
BsnI	GGCC	3 cut(s)	703, 712, 875
BsoBI	CYCGRG	1 cut(s)	978
Bsp143I	GATC	5 cut(s)	288, 562, 627, 649, 826
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	5 cut(s)	20, 365, 716, 940, 969
BspANI	GGCC	3 cut(s)	703, 712, 875
BspCNI	CTCAG	3 cut(s)	508, 784, 876
BspLI	GGNNCC	2 cut(s)	651, 702
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	3 cut(s)	644, 657, 821
BspQI	GCTCTTC	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	837
BssMI	GATC	5 cut(s)	288, 562, 627, 649, 826
BssNI	GRCGYC	2 cut(s)	238, 536
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	121, 284
Bst6I	CTCTTC	5 cut(s)	141, 249, 270, 375, 711
BstACI	GRCGYC	2 cut(s)	238, 536
BstAFI	CTTAAG	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	644
BstDEI	CTNAG	4 cut(s)	219, 516, 792, 884
BstEII	GGTNACC	1 cut(s)	942
BstF5I	GGATG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	5 cut(s)	291, 565, 630, 652, 829
BstMBI	GATC	5 cut(s)	288, 562, 627, 649, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	542, 700, 709, 865
BstNI	CCWGG	1 cut(s)	114
BstPI	GGTNACC	1 cut(s)	942
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	906
BstV1I	GCAGC	2 cut(s)	868, 892
BstV2I	GAAGAC	3 cut(s)	54, 158, 241
BstX2I	RGATCY	1 cut(s)	649
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	703, 712, 875
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	2 cut(s)	770, 916
BtsIMutI	CAGTG	2 cut(s)	770, 916
BveI	ACCTGC	1 cut(s)	550
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	2 cut(s)	701, 873
CseI	GACGC	2 cut(s)	525, 740
Csp6I	GTAC	3 cut(s)	178, 280, 806
CviAII	CATG	7 cut(s)	136, 295, 547, 578, 625, 695, 925
CviQI	GTAC	3 cut(s)	178, 280, 806
DdeI	CTNAG	4 cut(s)	219, 516, 792, 884
DpnI	GATC	5 cut(s)	290, 564, 629, 651, 828
DpnII	GATC	5 cut(s)	288, 562, 627, 649, 826
DraI	TTTAAA	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	710
Eam1104I	CTCTTC	5 cut(s)	141, 249, 270, 375, 711
EarI	CTCTTC	5 cut(s)	141, 249, 270, 375, 711
Eco57I	CTGAAG	1 cut(s)	390
Eco72I	CACGTG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	978
Eco91I	GGTNACC	1 cut(s)	942
EcoO109I	RGGNCCY	1 cut(s)	701
EcoO65I	GGTNACC	1 cut(s)	942
EcoRII	CCWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	579
FaeI	CATG	7 cut(s)	139, 298, 550, 581, 628, 698, 928
FatI	CATG	7 cut(s)	135, 294, 546, 577, 624, 694, 924
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	3 cut(s)	106, 440, 986
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	4 cut(s)	366, 857, 906, 969
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	4 cut(s)	366, 857, 906, 969
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	4 cut(s)	366, 857, 906, 969
HaeIII	GGCC	3 cut(s)	703, 712, 875
HgaI	GACGC	2 cut(s)	525, 740
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	2 cut(s)	238, 536
Hin1II	CATG	7 cut(s)	139, 298, 550, 581, 628, 698, 928
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	5 cut(s)	445, 833, 886, 892, 981
HphI	GGTGA	3 cut(s)	413, 531, 936
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	5 cut(s)	171, 330, 339, 891, 952
Hpy188III	TCNNGA	6 cut(s)	242, 314, 488, 671, 830, 978
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	6 cut(s)	155, 298, 498, 590, 601, 668
HpyCH4III	ACNGT	2 cut(s)	121, 284
HpyCH4IV	ACGT	2 cut(s)	238, 643
HpyCH4V	TGCA	6 cut(s)	110, 577, 770, 842, 908, 921
HpyF10VI	GCNNNNNNNGC	4 cut(s)	542, 700, 709, 865
HpyF3I	CTNAG	4 cut(s)	219, 516, 792, 884
HpySE526I	ACGT	2 cut(s)	238, 643
Hsp92I	GRCGYC	2 cut(s)	238, 536
Hsp92II	CATG	7 cut(s)	139, 298, 550, 581, 628, 698, 928
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	288, 562, 627, 649, 826
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	2 cut(s)	868, 892
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	238, 643
MaeIII	GTNAC	2 cut(s)	537, 942
MalI	GATC	5 cut(s)	290, 564, 629, 651, 828
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	5 cut(s)	288, 562, 627, 649, 826
MflI	RGATCY	1 cut(s)	649
MluCI	AATT	3 cut(s)	341, 387, 810
MlyI	GAGTC	3 cut(s)	895, 901, 990
Mph1103I	ATGCAT	1 cut(s)	579
MroXI	GAANNNNTTC	2 cut(s)	165, 324
MseI	TTAA	3 cut(s)	95, 125, 569
MspCI	CTTAAG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	542, 700, 709, 865
NdeI	CATATG	3 cut(s)	106, 440, 986
NdeII	GATC	5 cut(s)	288, 562, 627, 649, 826
NlaIII	CATG	7 cut(s)	139, 298, 550, 581, 628, 698, 928
NlaIV	GGNNCC	2 cut(s)	651, 702
NmuCI	GTSAC	2 cut(s)	537, 942
NsiI	ATGCAT	1 cut(s)	579
PaeR7I	CTCGAG	1 cut(s)	978
PaqCI	CACCTGC	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	165, 324
PfeI	GAWTC	2 cut(s)	445, 833
PkrI	GCNGC	4 cut(s)	367, 858, 907, 970
PleI	GAGTC	3 cut(s)	894, 900, 989
PmaCI	CACGTG	1 cut(s)	644
PmlI	CACGTG	1 cut(s)	644
PpsI	GAGTC	3 cut(s)	894, 900, 989
Ppu21I	YACGTR	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	112
PspCI	CACGTG	1 cut(s)	644
PspEI	GGTNACC	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	651, 702
PspPI	GGNCC	2 cut(s)	701, 873
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	3 cut(s)	179, 281, 807
RsaNI	GTAC	3 cut(s)	178, 280, 806
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	95, 125, 569
SatI	GCNGC	4 cut(s)	366, 857, 906, 969
Sau3AI	GATC	5 cut(s)	288, 562, 627, 649, 826
Sau96I	GGNCC	2 cut(s)	701, 873
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	3 cut(s)	895, 901, 990
ScrFI	CCNGG	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	906
SfiI	GGCCNNNNNGGCC	1 cut(s)	709
Sfr274I	CTCGAG	1 cut(s)	978
SlaI	CTCGAG	1 cut(s)	978
SmlI	CTYRAG	2 cut(s)	124, 978
SmoI	CTYRAG	2 cut(s)	124, 978
Sse9I	AATT	3 cut(s)	341, 387, 810
SsiI	CCGC	5 cut(s)	20, 365, 716, 940, 969
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	121, 284
TaiI	ACGT	2 cut(s)	241, 646
TaqI	TCGA	4 cut(s)	232, 463, 630, 979
TasI	AATT	3 cut(s)	341, 387, 810
TatI	WGTACW	2 cut(s)	177, 805
TauI	GCSGC	2 cut(s)	368, 971
TfiI	GAWTC	2 cut(s)	445, 833
Tru1I	TTAA	3 cut(s)	95, 125, 569
Tru9I	TTAA	3 cut(s)	95, 125, 569
TscAI	CASTG	2 cut(s)	777, 923
TseFI	GTSAC	2 cut(s)	537, 942
TseI	GCWGC	2 cut(s)	856, 905
Tsp45I	GTSAC	2 cut(s)	537, 942
TspDTI	ATGAA	4 cut(s)	152, 204, 218, 609
TspRI	CASTG	2 cut(s)	777, 923
Vha464I	CTTAAG	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	978
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	165, 324
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.