Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Reverse (-)

21762691 .. 21764989

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21470.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAGCGAGGGTGTTCTCGCTAACATGCGCAGCGCCTCCACTTTCACCGACGCCATCGTCATCTTCCTCGCATACAAGGCTCTGGTCCTCTCAGTTGAAGCCAAAATATGTTTCAGTTTTGAGGAAGAGCATGAAAAAGGAAGAACCAGTATTAGAAGGTCTTCCCAAAGAATACTACGACGATGAATGGCAAGCTCAGCAAAGGGAGAAGACAAAGGAGCTCAATCGAAGGCGCCACGAGGAAGACGAAGAGGAGGAGAGGAAGGTTGAAGAGTATAGGGAGATTGGCATGAGATTGAAGGATTATCCTGAAGAAGATGTCCGAAATGCTCGGAAGCTGATTTCAAGCTTTATCAGAGCAGCTGAAGAAGTGGAAGAGAAAATTGAGGAAGCTGCTGAGAAAGGGGAACTTACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGACCTCGCTCGACGTGATGATGAAAAGGATGTTATTAGAAGTCTCGATTTGCTATACAGAAGGGTCGAGGCTGAGATTTTGAAAAGGGAGGCTACTCCTGCGATGAGACTGCTCAACGATCTTTTGAATATGCATGATGGGTTGGATGGTGAAGGGTGGCTGAAGGAATGCAAAAAGCGCATGATTGATACTTTTCCACGAGATGGATCGATCCATTTAGCATTCTTGTTCCAGCAGGATTTGACATTGATAAGCACGAAGGACCACTCAGGCTACCAGTTGAAGCTGACGATGCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

29.41

Weight (kDa)

5.41

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc16I	TGCGCA	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	653
AclWI	GGATC	2 cut(s)	655, 664
AcuI	CTGAAG	3 cut(s)	333, 387, 632
AcyI	GRCGYC	2 cut(s)	53, 235
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	7 cut(s)	100, 272, 301, 348, 532, 577, 733
AjiI	CACGTC	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	7 cut(s)	197, 223, 340, 351, 365, 395, 736
AluI	AGCT	7 cut(s)	197, 223, 340, 351, 365, 395, 736
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	497, 550
AlwI	GGATC	2 cut(s)	655, 664
ApeKI	GCWGC	3 cut(s)	32, 362, 395
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	4 cut(s)	32, 37, 237, 630
AspS9I	GGNCC	2 cut(s)	87, 712
AsuHPI	GGTGA	2 cut(s)	39, 611
AvaII	GGWCC	2 cut(s)	87, 712
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	2 cut(s)	239, 648
BbsI	GAAGAC	3 cut(s)	155, 218, 252
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	44, 374, 382
BccI	CCATC	5 cut(s)	64, 424, 581, 590, 647
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BcoDI	GTCTC	2 cut(s)	497, 550
BfoI	RGCGCY	2 cut(s)	38, 238
BisI	GCNGC	3 cut(s)	33, 363, 396
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	3 cut(s)	34, 364, 397
Bme18I	GGWCC	2 cut(s)	87, 712
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	87, 712
BmiI	GGNNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	732
BpiI	GAAGAC	3 cut(s)	155, 218, 252
Bpu1102I	GCTNAGC	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	659
BsaHI	GRCGYC	2 cut(s)	53, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse1I	ACTGG	2 cut(s)	149, 727
BseCI	ATCGAT	1 cut(s)	659
BseGI	GGATG	2 cut(s)	484, 601
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMII	CTCAG	5 cut(s)	107, 212, 390, 513, 732
BseNI	ACTGG	2 cut(s)	149, 727
BseRI	GAGGAG	2 cut(s)	269, 272
BseXI	GCAGC	3 cut(s)	44, 374, 382
BshNI	GGYRCC	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	497, 550
BsmI	GAATGC	2 cut(s)	623, 671
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	568, 656, 660
Bsp1720I	GCTNAGC	1 cut(s)	198
BspCNI	CTCAG	5 cut(s)	106, 211, 391, 514, 731
BspDI	ATCGAT	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	655, 664
BspQI	GCTCTTC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	149, 727
BssMI	GATC	3 cut(s)	568, 656, 660
BssNI	GRCGYC	2 cut(s)	53, 235
BssSI	CACGAG	2 cut(s)	239, 648
Bst2BI	CACGAG	2 cut(s)	239, 648
Bst6I	CTCTTC	4 cut(s)	122, 246, 267, 372
BstACI	GRCGYC	2 cut(s)	53, 235
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	5 cut(s)	93, 198, 399, 522, 718
BstF5I	GGATG	2 cut(s)	484, 601
BstH2I	RGCGCY	2 cut(s)	38, 238
BstHHI	GCGC	4 cut(s)	32, 37, 237, 630
BstKTI	GATC	3 cut(s)	571, 659, 663
BstMAI	GTCTC	2 cut(s)	497, 550
BstMBI	GATC	3 cut(s)	568, 656, 660
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 199, 548, 627, 742
BstNSI	RCATGY	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	44, 374, 382
BstV2I	GAAGAC	3 cut(s)	155, 218, 252
Bsu15I	ATCGAT	1 cut(s)	659
BsuTUI	ATCGAT	1 cut(s)	659
BtgZI	GCGATG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	484, 601
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	4 cut(s)	32, 37, 237, 630
Cfr13I	GGNCC	2 cut(s)	87, 712
ClaI	ATCGAT	1 cut(s)	659
CseI	GACGC	1 cut(s)	61
CviAII	CATG	5 cut(s)	27, 133, 292, 584, 631
DdeI	CTNAG	5 cut(s)	93, 198, 399, 522, 718
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	3 cut(s)	570, 658, 662
DpnII	GATC	3 cut(s)	568, 656, 660
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
Eam1104I	CTCTTC	4 cut(s)	122, 246, 267, 372
EarI	CTCTTC	4 cut(s)	122, 246, 267, 372
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	87, 712
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	3 cut(s)	333, 387, 632
EcoICRI	GAGCTC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
FaeI	CATG	5 cut(s)	30, 136, 295, 587, 634
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	5 cut(s)	26, 132, 291, 583, 630
FauNDI	CATATG	1 cut(s)	437
Fnu4HI	GCNGC	3 cut(s)	33, 363, 396
FokI	GGATG	2 cut(s)	491, 608
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	33, 363, 396
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	4 cut(s)	31, 36, 236, 629
GluI	GCNGC	3 cut(s)	33, 363, 396
HaeII	RGCGCY	2 cut(s)	38, 238
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	4 cut(s)	32, 37, 237, 630
Hin1I	GRCGYC	2 cut(s)	53, 235
Hin1II	CATG	5 cut(s)	30, 136, 295, 587, 634
Hin6I	GCGC	4 cut(s)	30, 35, 235, 628
HinP1I	GCGC	4 cut(s)	30, 35, 235, 628
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	1 cut(s)	442
HphI	GGTGA	2 cut(s)	39, 611
Hpy188I	TCNGA	3 cut(s)	326, 336, 359
Hpy188III	TCNNGA	2 cut(s)	311, 494
Hpy99I	CGWCG	3 cut(s)	55, 185, 465
HpyAV	CCTTC	8 cut(s)	152, 225, 259, 295, 504, 596, 607, 703
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	583, 621
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 199, 548, 627, 742
HpyF3I	CTNAG	5 cut(s)	93, 198, 399, 522, 718
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	2 cut(s)	53, 235
Hsp92II	CATG	5 cut(s)	30, 136, 295, 587, 634
HspAI	GCGC	4 cut(s)	30, 35, 235, 628
KasI	GGCGCC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	568, 656, 660
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	8 cut(s)	70, 162, 324, 561, 671, 695, 705, 740
Lsp1109I	GCAGC	3 cut(s)	44, 374, 382
LweI	GCATC	1 cut(s)	732
MaeII	ACGT	1 cut(s)	463
MalI	GATC	3 cut(s)	570, 658, 662
MboI	GATC	3 cut(s)	568, 656, 660
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	384
Mly113I	GGCGCC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	365
MteI	GCGCNGCGC	1 cut(s)	33
Mva1269I	GAATGC	2 cut(s)	623, 671
MwoI	GCNNNNNNNGC	5 cut(s)	79, 199, 548, 627, 742
NarI	GGCGCC	1 cut(s)	235
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	3 cut(s)	568, 656, 660
NlaIII	CATG	5 cut(s)	30, 136, 295, 587, 634
NlaIV	GGNNCC	1 cut(s)	236
NsbI	TGCGCA	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	2 cut(s)	623, 671
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	34, 364, 397
PluTI	GGCGCC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	87, 712
PvuII	CAGCTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	3 cut(s)	33, 363, 396
Sau3AI	GATC	3 cut(s)	568, 656, 660
Sau96I	GGNCC	2 cut(s)	87, 712
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	732
SfoI	GGCGCC	1 cut(s)	236
SinI	GGWCC	2 cut(s)	87, 712
Sse9I	AATT	1 cut(s)	384
SspDI	GGCGCC	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	225
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	5 cut(s)	229, 460, 495, 516, 659
TasI	AATT	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	32, 362, 395
TspDTI	ATGAA	3 cut(s)	149, 201, 486
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	87, 712
XceI	RCATGY	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.