Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Reverse (-)

7382438 .. 7384753

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGGCGAGGGTGTTCCCGCTTACTAGCACATCACTTCCGTTTTCACTTATTCCATCGTCTTCAACGTATCTAAGTCTTTGGCCCTCTCCTTTAAGACCCACATATGCACCTGGCACAGTCTTGAGGAGGAGCATGAAAAAGGAAGAGCCACTATTAGAAGGTCTTCCGAAAGAGTACTACGATGATGAATGGCAATCGCAACAAAGGGAGAAAACTAAGGAGTTTCATCGAAGACGTCAAGAGGAAGACGAAGAGGAGGAGAGAAAGATTGAAGAGTACCGTGAGATCGGCATGAGATTGAAGGATTATCCAGAAGAAGATGTTCGGAAAGCTCGGAAATTGATTTCCAGCTTTATTAGAGCGGCTGAAGAAGTAGAAGAGAAAATTGAGGAAGCTGGTGAGAAAGGGGAACTGACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGACCTCGCTCGACGGGATGATGAAAAGGATGTTATTAGAAGTCTTGATTTGCTATACAGAAGGATTGAGGCTGAGATTTTGAAACAGGAGGCCTCACCTGCCATGCGACTTCTCAATGATCTTTTAAATATGCATGATGGTTTTGATGATGAAGGGTGGCAGAAGGAATGTAAAAAGCGCATGATCGATACATTTCCACGCGAGGATCCATTTAGCATTTTAGTTCCAGAAGGATTTGACATTGATAAGCATGAGGGACCTCTTCGGCCACCGCTTGAAGTAGATGACTCTCTATTGAGGGTAGACTTTGTAAGAGAGGTTGATGCACTGCTACAAGAGGTTCGGGCTGAGCAAAGCGAAGTACAAATTACACAAGGGCTTGATCCTGAATCCATTGCAAGTAGATTGAAGCAGCAGGAGAAGCAACGGGCCATACGGCTGGTAGAAGCTATACTAAACCTGGCCATTAATTTAAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

36.64

Weight (kDa)

4.88

Isoelectric Point (pI)

75.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	654
AciI	CCGC	3 cut(s)	20, 365, 725
AclWI	GGATC	3 cut(s)	653, 666, 830
AcoI	YGGCCR	2 cut(s)	719, 915
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	3 cut(s)	179, 281, 816
AgsI	TTSAA	6 cut(s)	66, 275, 304, 535, 731, 862
AjnI	CCWGG	2 cut(s)	112, 912
AluBI	AGCT	4 cut(s)	335, 354, 398, 902
AluI	AGCT	4 cut(s)	335, 354, 398, 902
AlwI	GGATC	3 cut(s)	653, 666, 830
AoxI	GGCC	5 cut(s)	83, 543, 719, 882, 915
ApeKI	GCWGC	1 cut(s)	865
AseI	ATTAAT	1 cut(s)	921
Asp700I	GAANNNNTTC	2 cut(s)	165, 324
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	84, 710, 882
AsuHPI	GGTGA	2 cut(s)	413, 540
AvaII	GGWCC	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	917
BamHI	GGATCC	1 cut(s)	658
BbsI	GAAGAC	4 cut(s)	54, 158, 241, 255
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	3 cut(s)	64, 427, 584
BceAI	ACGGC	1 cut(s)	905
BciT130I	CCWGG	2 cut(s)	114, 914
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	2 cut(s)	366, 866
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	2 cut(s)	367, 867
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	114, 914
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	3 cut(s)	84, 710, 882
BmiI	GGNNCC	2 cut(s)	660, 711
BmrFI	CCNGG	2 cut(s)	114, 914
BmsI	GCATC	1 cut(s)	766
BpiI	GAAGAC	4 cut(s)	54, 158, 241, 255
Bpu1102I	GCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	114, 914
BseCI	ATCGAT	1 cut(s)	639
BseGI	GGATG	2 cut(s)	475, 487
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	2 cut(s)	516, 792
BseRI	GAGGAG	4 cut(s)	142, 145, 272, 275
BseXI	GCAGC	1 cut(s)	877
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	5 cut(s)	85, 545, 721, 884, 917
BshVI	ATCGAT	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	5 cut(s)	85, 545, 721, 884, 917
Bsp143I	GATC	5 cut(s)	288, 571, 636, 658, 835
Bsp1720I	GCTNAGC	1 cut(s)	801
BspACI	CCGC	3 cut(s)	20, 365, 725
BspANI	GGCC	5 cut(s)	85, 545, 721, 884, 917
BspCNI	CTCAG	2 cut(s)	517, 793
BspDI	ATCGAT	1 cut(s)	639
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	660, 711
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	653, 666, 830
BspQI	GCTCTTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	846
BssMI	GATC	5 cut(s)	288, 571, 636, 658, 835
BssNI	GRCGYC	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	114, 914
Bst4CI	ACNGT	2 cut(s)	121, 284
Bst6I	CTCTTC	5 cut(s)	141, 249, 270, 375, 720
BstACI	GRCGYC	1 cut(s)	238
BstDEI	CTNAG	4 cut(s)	74, 219, 525, 801
BstF5I	GGATG	2 cut(s)	475, 487
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	5 cut(s)	291, 574, 639, 661, 838
BstMBI	GATC	5 cut(s)	288, 571, 636, 658, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 874
BstNI	CCWGG	2 cut(s)	114, 914
BstSCI	CCNGG	2 cut(s)	112, 912
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	877
BstV2I	GAAGAC	4 cut(s)	54, 158, 241, 255
BstX2I	RGATCY	1 cut(s)	658
BstXI	CCANNNNNNTGG	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	658
Bsu15I	ATCGAT	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	85, 545, 721, 884, 917
BsuTUI	ATCGAT	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	475, 487
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	3 cut(s)	84, 710, 882
ClaI	ATCGAT	1 cut(s)	639
Csp6I	GTAC	3 cut(s)	178, 280, 815
CviAII	CATG	6 cut(s)	136, 295, 556, 587, 634, 704
CviQI	GTAC	3 cut(s)	178, 280, 815
DdeI	CTNAG	4 cut(s)	74, 219, 525, 801
DpnI	GATC	5 cut(s)	290, 573, 638, 660, 837
DpnII	GATC	5 cut(s)	288, 571, 636, 658, 835
DraI	TTTAAA	2 cut(s)	579, 927
EaeI	YGGCCR	2 cut(s)	719, 915
Eam1104I	CTCTTC	5 cut(s)	141, 249, 270, 375, 720
EarI	CTCTTC	5 cut(s)	141, 249, 270, 375, 720
Eco147I	AGGCCT	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	112, 912
EcoT22I	ATGCAT	1 cut(s)	588
FaeI	CATG	6 cut(s)	139, 298, 559, 590, 637, 707
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	6 cut(s)	135, 294, 555, 586, 633, 703
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	2 cut(s)	106, 440
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	366, 866
FokI	GGATG	2 cut(s)	482, 494
Fsp4HI	GCNGC	2 cut(s)	366, 866
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	366, 866
HaeIII	GGCC	5 cut(s)	85, 545, 721, 884, 917
HhaI	GCGC	1 cut(s)	633
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	139, 298, 559, 590, 637, 707
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	445, 740, 842
HphI	GGTGA	2 cut(s)	413, 540
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	3 cut(s)	171, 330, 339
Hpy188III	TCNNGA	6 cut(s)	124, 242, 314, 497, 680, 839
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	6 cut(s)	155, 298, 507, 599, 610, 677
HpyCH4III	ACNGT	2 cut(s)	121, 284
HpyCH4IV	ACGT	2 cut(s)	68, 238
HpyCH4V	TGCA	4 cut(s)	110, 586, 779, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 874
HpyF3I	CTNAG	4 cut(s)	74, 219, 525, 801
HpySE526I	ACGT	2 cut(s)	68, 238
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	6 cut(s)	139, 298, 559, 590, 637, 707
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	5 cut(s)	288, 571, 636, 658, 835
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	68, 238
MalI	GATC	5 cut(s)	290, 573, 638, 660, 837
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	5 cut(s)	288, 571, 636, 658, 835
MflI	RGATCY	1 cut(s)	658
MlsI	TGGCCA	1 cut(s)	917
MluCI	AATT	4 cut(s)	341, 387, 819, 922
MluNI	TGGCCA	1 cut(s)	917
MlyI	GAGTC	1 cut(s)	734
Mox20I	TGGCCA	1 cut(s)	917
Mph1103I	ATGCAT	1 cut(s)	588
MroXI	GAANNNNTTC	2 cut(s)	165, 324
MscI	TGGCCA	1 cut(s)	917
MseI	TTAA	4 cut(s)	95, 578, 921, 926
Msp20I	TGGCCA	1 cut(s)	917
MspR9I	CCNGG	2 cut(s)	114, 914
MvaI	CCWGG	2 cut(s)	114, 914
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	551, 874
NdeI	CATATG	2 cut(s)	106, 440
NdeII	GATC	5 cut(s)	288, 571, 636, 658, 835
NlaIII	CATG	6 cut(s)	139, 298, 559, 590, 637, 707
NlaIV	GGNNCC	2 cut(s)	660, 711
NsiI	ATGCAT	1 cut(s)	588
PaqCI	CACCTGC	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	165, 324
PfeI	GAWTC	2 cut(s)	445, 842
PkrI	GCNGC	2 cut(s)	367, 867
PleI	GAGTC	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	734
PpuMI	RGGWCCY	1 cut(s)	710
PshBI	ATTAAT	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	112, 912
PspGI	CCWGG	2 cut(s)	112, 912
PspN4I	GGNNCC	2 cut(s)	660, 711
PspPI	GGNCC	3 cut(s)	84, 710, 882
PspPPI	RGGWCCY	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	3 cut(s)	179, 281, 816
RsaNI	GTAC	3 cut(s)	178, 280, 815
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	95, 578, 921, 926
SatI	GCNGC	2 cut(s)	366, 866
Sau3AI	GATC	5 cut(s)	288, 571, 636, 658, 835
Sau96I	GGNCC	3 cut(s)	84, 710, 882
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	114, 914
SfaNI	GCATC	1 cut(s)	766
SinI	GGWCC	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	341, 387, 819, 922
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	3 cut(s)	20, 365, 725
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	2 cut(s)	112, 912
TaaI	ACNGT	2 cut(s)	121, 284
TaiI	ACGT	2 cut(s)	71, 241
TaqI	TCGA	3 cut(s)	232, 463, 639
TasI	AATT	4 cut(s)	341, 387, 819, 922
TatI	WGTACW	2 cut(s)	177, 814
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	445, 842
Tru1I	TTAA	4 cut(s)	95, 578, 921, 926
Tru9I	TTAA	4 cut(s)	95, 578, 921, 926
TscAI	CASTG	1 cut(s)	786
TseI	GCWGC	1 cut(s)	865
TspDTI	ATGAA	5 cut(s)	152, 204, 218, 489, 618
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	710
VspI	ATTAAT	1 cut(s)	921
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	165, 324
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.