Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Reverse (-)

28446859 .. 28448920

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25710.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAAGCGAGGGTGTTCCCGCTAACGTGCGCGGCGCTGCCACTCTCACCGACGCCATCGTCATCTTCCTCGCATGCAAGTCTCTGGCCCTCTCGGTTGAAGCCAAAACATGTTTCAGTTTTGAGGAAGAGCATGAAAAAGGAAGAACCAGTACTTGAAGGTCTTCCCAAAGAGTACTACGACGATGAATGGCAAGCTCGGCAAAGGGAGAAAACGAAGGAGCTGCATCGAAGGCGTCAAGAGGAGGACGAAGAGGAGGAAAGGAAGGTTGAAGAGTATAGGGAGATAGGCATGAGATTAAAGGATTATCCCGAAGAAGATGTCCGAAATGCTCGGAAGCTGATTTCGAGCTTTATCAGAGCTGCTGAAGAAGTGGAAGAGAAAATTGAGGAAGCTGCTGAGAAAGGGGAACTGACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGACCTCGCTCGACGTGATGATGAAAAGGATGTTATTAGAAGTCTTGATTTGCTATACAGAAGGGTCGAGGCTGAGATTCTGAAACGGGAGGCTACTCCTGCCATGAGACTGCTCAATGATCTTTTGAATATGCATGATGGCTTCGACGGTGAAGTGTGGCTGAAGGAATGCAAAAAGCGCATGATCGATACTTTCCCACGGGAGGATCCATTTAGCATTCTTGTTCCAGCAGGATTTGACATCGATAAGCATGAAGGACCACTCCGGCTACCAGTTGAAGCCGATGATGCTCTACTGAGGGTAGACTTTGTCAGGGAGGTCGATGCATTGCTACAAGAGGTTCGCGCCGAGCAAAGTGAACTACAAAATGCACAAGGGCTTGATCCTGAAGCCATTGCAAGTAGGTTGAAGCAGCAGGAAAAGCAGCGTGCCATATGCTTGGTAGAATCGATACTAGACCTGGCCATTAATTTGCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

36.19

Weight (kDa)

5.02

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	753
AccII	CGCG	2 cut(s)	32, 795
AciI	CCGC	2 cut(s)	20, 32
AclWI	GGATC	3 cut(s)	650, 663, 827
AcoI	YGGCCR	1 cut(s)	912
AcuI	CTGAAG	3 cut(s)	387, 632, 858
AcyI	GRCGYC	2 cut(s)	53, 235
AfaI	GTAC	2 cut(s)	153, 176
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	6 cut(s)	100, 158, 272, 577, 728, 859
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	909
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	6 cut(s)	197, 223, 340, 351, 362, 395
AluI	AGCT	6 cut(s)	197, 223, 340, 351, 362, 395
Alw26I	GTCTC	2 cut(s)	86, 550
AlwI	GGATC	3 cut(s)	650, 663, 827
AoxI	GGCC	2 cut(s)	86, 912
ApeKI	GCWGC	6 cut(s)	37, 223, 362, 395, 862, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AseI	ATTAAT	1 cut(s)	918
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	4 cut(s)	32, 37, 630, 797
AspS9I	GGNCC	2 cut(s)	87, 707
AsuHPI	GGTGA	2 cut(s)	39, 611
AvaII	GGWCC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	914
BamHI	GGATCC	1 cut(s)	655
BarI	GAAGNNNNNNTAC	2 cut(s)	135, 167
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	6 cut(s)	24, 210, 349, 382, 874, 886
BccI	CCATC	3 cut(s)	64, 424, 581
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	911
BcoDI	GTCTC	2 cut(s)	86, 550
BfaI	CTAG	1 cut(s)	905
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	7 cut(s)	33, 38, 224, 363, 396, 863, 875
BlsI	GCNGC	7 cut(s)	34, 39, 225, 364, 397, 864, 876
BmcAI	AGTACT	2 cut(s)	153, 176
Bme1390I	CCNGG	1 cut(s)	911
Bme18I	GGWCC	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	87, 707
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	911
BmsI	GCATC	3 cut(s)	235, 727, 763
BpiI	GAAGAC	1 cut(s)	155
Bsa29I	ATCGAT	3 cut(s)	636, 693, 899
BsaHI	GRCGYC	2 cut(s)	53, 235
BsaJI	CCNNGG	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	149, 722
Bse3DI	GCAATG	2 cut(s)	776, 843
BseBI	CCWGG	1 cut(s)	911
BseCI	ATCGAT	3 cut(s)	636, 693, 899
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	2 cut(s)	776, 843
BseMII	CTCAG	3 cut(s)	390, 513, 737
BseNI	ACTGG	2 cut(s)	149, 722
BseRI	GAGGAG	2 cut(s)	257, 269
BseXI	GCAGC	6 cut(s)	24, 210, 349, 382, 874, 886
Bsh1236I	CGCG	2 cut(s)	32, 795
BshFI	GGCC	2 cut(s)	88, 914
BshVI	ATCGAT	3 cut(s)	636, 693, 899
BsiSI	CCGG	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	86, 550
BsmI	GAATGC	2 cut(s)	623, 666
BsnI	GGCC	2 cut(s)	88, 914
Bsp143I	GATC	4 cut(s)	568, 633, 655, 832
BspACI	CCGC	2 cut(s)	20, 32
BspANI	GGCC	2 cut(s)	88, 914
BspCNI	CTCAG	3 cut(s)	391, 514, 738
BspDI	ATCGAT	3 cut(s)	636, 693, 899
BspFNI	CGCG	2 cut(s)	32, 795
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	3 cut(s)	650, 663, 827
BspQI	GCTCTTC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	776, 843
BsrI	ACTGG	2 cut(s)	149, 722
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	4 cut(s)	568, 633, 655, 832
BssNI	GRCGYC	2 cut(s)	53, 235
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	4 cut(s)	122, 246, 267, 372
BstACI	GRCGYC	2 cut(s)	53, 235
BstC8I	GCNNGC	3 cut(s)	75, 195, 879
BstDEI	CTNAG	3 cut(s)	399, 522, 746
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	32, 795
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	4 cut(s)	32, 37, 630, 797
BstKTI	GATC	4 cut(s)	571, 636, 658, 835
BstMAI	GTCTC	2 cut(s)	86, 550
BstMBI	GATC	4 cut(s)	568, 633, 655, 832
BstMWI	GCNNNNNNNGC	6 cut(s)	199, 232, 548, 627, 737, 871
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	2 cut(s)	77, 113
BstSCI	CCNGG	1 cut(s)	909
BstUI	CGCG	2 cut(s)	32, 795
BstV1I	GCAGC	6 cut(s)	24, 210, 349, 382, 874, 886
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	655
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	655
Bsu15I	ATCGAT	3 cut(s)	636, 693, 899
BsuRI	GGCC	2 cut(s)	88, 914
BsuTUI	ATCGAT	3 cut(s)	636, 693, 899
BtgI	CCRYGG	1 cut(s)	647
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	1 cut(s)	932
Cac8I	GCNNGC	3 cut(s)	75, 195, 879
CfoI	GCGC	4 cut(s)	32, 37, 630, 797
Cfr13I	GGNCC	2 cut(s)	87, 707
ClaI	ATCGAT	3 cut(s)	636, 693, 899
CseI	GACGC	2 cut(s)	61, 224
Csp6I	GTAC	2 cut(s)	152, 175
CviAII	CATG	8 cut(s)	74, 110, 133, 292, 553, 584, 631, 701
CviQI	GTAC	2 cut(s)	152, 175
DdeI	CTNAG	3 cut(s)	399, 522, 746
DpnI	GATC	4 cut(s)	570, 635, 657, 834
DpnII	GATC	4 cut(s)	568, 633, 655, 832
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	4 cut(s)	122, 246, 267, 372
EarI	CTCTTC	4 cut(s)	122, 246, 267, 372
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	3 cut(s)	387, 632, 858
EcoRII	CCWGG	1 cut(s)	909
EcoT22I	ATGCAT	2 cut(s)	585, 778
FaeI	CATG	8 cut(s)	77, 113, 136, 295, 556, 587, 634, 704
FatI	CATG	8 cut(s)	73, 109, 132, 291, 552, 583, 630, 700
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	2 cut(s)	437, 884
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	7 cut(s)	33, 38, 224, 363, 396, 863, 875
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	7 cut(s)	33, 38, 224, 363, 396, 863, 875
FspBI	CTAG	1 cut(s)	905
GlaI	GCGC	4 cut(s)	31, 36, 629, 796
GluI	GCNGC	7 cut(s)	33, 38, 224, 363, 396, 863, 875
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	88, 914
HapII	CCGG	1 cut(s)	715
HgaI	GACGC	2 cut(s)	61, 224
HhaI	GCGC	4 cut(s)	32, 37, 630, 797
Hin1I	GRCGYC	2 cut(s)	53, 235
Hin1II	CATG	8 cut(s)	77, 113, 136, 295, 556, 587, 634, 704
Hin6I	GCGC	4 cut(s)	30, 35, 628, 795
HinP1I	GCGC	4 cut(s)	30, 35, 628, 795
HinfI	GANTC	3 cut(s)	442, 526, 896
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	2 cut(s)	39, 611
Hpy166II	GTNNAC	2 cut(s)	754, 809
Hpy188I	TCNGA	4 cut(s)	326, 336, 359, 531
Hpy188III	TCNNGA	4 cut(s)	239, 311, 494, 836
Hpy8I	GTNNAC	2 cut(s)	754, 809
Hpy99I	CGWCG	4 cut(s)	55, 185, 465, 599
HpyAV	CCTTC	7 cut(s)	152, 211, 225, 259, 504, 607, 698
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	2 cut(s)	26, 463
HpyCH4V	TGCA	8 cut(s)	77, 226, 583, 621, 776, 821, 848, 925
HpyF10VI	GCNNNNNNNGC	6 cut(s)	199, 232, 548, 627, 737, 871
HpyF3I	CTNAG	3 cut(s)	399, 522, 746
HpySE526I	ACGT	2 cut(s)	26, 463
Hsp92I	GRCGYC	2 cut(s)	53, 235
Hsp92II	CATG	8 cut(s)	77, 113, 136, 295, 556, 587, 634, 704
HspAI	GCGC	4 cut(s)	30, 35, 628, 795
Kzo9I	GATC	4 cut(s)	568, 633, 655, 832
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	6 cut(s)	24, 210, 349, 382, 874, 886
LweI	GCATC	3 cut(s)	235, 727, 763
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	2 cut(s)	26, 463
MalI	GATC	4 cut(s)	570, 635, 657, 834
MboI	GATC	4 cut(s)	568, 633, 655, 832
MflI	RGATCY	1 cut(s)	655
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	2 cut(s)	384, 919
MluNI	TGGCCA	1 cut(s)	914
Mox20I	TGGCCA	1 cut(s)	914
Mph1103I	ATGCAT	2 cut(s)	585, 778
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	2 cut(s)	299, 918
Msp20I	TGGCCA	1 cut(s)	914
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	911
MteI	GCGCNGCGC	1 cut(s)	33
Mva1269I	GAATGC	2 cut(s)	623, 666
MvaI	CCWGG	1 cut(s)	911
MvnI	CGCG	2 cut(s)	32, 795
MwoI	GCNNNNNNNGC	6 cut(s)	199, 232, 548, 627, 737, 871
NdeI	CATATG	2 cut(s)	437, 884
NdeII	GATC	4 cut(s)	568, 633, 655, 832
NlaIII	CATG	8 cut(s)	77, 113, 136, 295, 556, 587, 634, 704
NlaIV	GGNNCC	1 cut(s)	657
NmeAIII	GCCGAG	2 cut(s)	178, 823
NsiI	ATGCAT	2 cut(s)	585, 778
NspI	RCATGY	2 cut(s)	77, 113
PaeI	GCATGC	1 cut(s)	77
PciI	ACATGT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	2 cut(s)	623, 666
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	442, 526, 896
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	7 cut(s)	34, 39, 225, 364, 397, 864, 876
PscI	ACATGT	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	2 cut(s)	87, 707
PsuI	RGATCY	1 cut(s)	655
PsyI	GACNNNGTC	1 cut(s)	758
RsaI	GTAC	2 cut(s)	153, 176
RsaNI	GTAC	2 cut(s)	152, 175
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	299, 918
SatI	GCNGC	7 cut(s)	33, 38, 224, 363, 396, 863, 875
Sau3AI	GATC	4 cut(s)	568, 633, 655, 832
Sau96I	GGNCC	2 cut(s)	87, 707
ScaI	AGTACT	2 cut(s)	153, 176
ScrFI	CCNGG	1 cut(s)	911
SfaNI	GCATC	3 cut(s)	235, 727, 763
SinI	GGWCC	1 cut(s)	707
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	384, 919
SsiI	CCGC	2 cut(s)	20, 32
SspMI	CTAG	1 cut(s)	905
StyD4I	CCNGG	1 cut(s)	909
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	2 cut(s)	29, 466
TaqI	TCGA	9 cut(s)	229, 347, 460, 516, 594, 636, 693, 771, 899
TasI	AATT	2 cut(s)	384, 919
TatI	WGTACW	2 cut(s)	151, 174
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	442, 526, 896
Tru1I	TTAA	2 cut(s)	299, 918
Tru9I	TTAA	2 cut(s)	299, 918
TscAI	CASTG	1 cut(s)	932
TseI	GCWGC	6 cut(s)	37, 223, 362, 395, 862, 874
TspDTI	ATGAA	4 cut(s)	149, 201, 486, 717
TspRI	CASTG	1 cut(s)	932
Tth111I	GACNNNGTC	1 cut(s)	758
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	918
XceI	RCATGY	2 cut(s)	77, 113
XmiI	GTMKAC	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	905
ZrmI	AGTACT	2 cut(s)	153, 176
Zsp2I	ATGCAT	2 cut(s)	585, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.