Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Reverse (-)

35352767 .. 35355487

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1268900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAAGCGAGGGTGTTCCAGCTAACGTGCGCAGCGCCTCCACTTTCGCCGACGCCATCGTCATCTTCCTCGCATGCAAGGCTCTGGTCCTCTCAGTTGAAGCCAAAATATGTTTCAGTTTTGAGGAAGAGCGTGAAAAAGGAAGAACCAGTATTAGAAGGTCTTCCAAAAGAGTACTACGACGATGACTGGCAAGCTCAGCAAAGGGAGAAGACGAAGGAGCTCAATCGAAGGCGCCAAGAGGAAGACGAAGAGGAGGAGAGGAAGGTTGAAGAGTATAGGGAGATTGGCATGAGATTGAAGGATTATCCTGAAGAAGATGTCCGAAATGCTCGGAAGCTGATTTCGAGCTTTATCAGAGCAGCTGAAGAAGTGGAAGAGAAAATTGAGGAAGCTGCTGAGAAAGGGGAACTGACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGATCTCGCTCGACGTGATGATGAAAAGGATGTTATTAGAAGTCTCGATTTGCTATACAGAAGGGTCGAGGCTGAGATTTTGAAAAGGGAGGCTACTCCTGCCATGAGACTGCTCAACGATCTTTTGAATATGCATGATGGGTTCGATGGTGAAGGGTGGCTGAAGGAATGCAAAAAGCGCATGATTGATACTTTTCCACGAGAGGATCCATTTAGCATTCTTGTTCCAGCAGGATTTGACATTGATAAGCACGAAGGACCACTCAGGCTACCAGTTGAAGCTGACGATGCTCTGTTGAGGGTGGACTTTGTTAGAGAGGTCGATGCATTGCTGCAAGAGGTTCGGGCTGAGCAAAGTGAAGTACAAAATGCACAAGGGCTTGATCCTGAAGCCATTGCTAGTCGGTTGAAGCAACAGGAGAAGCAACGTGCCATACGCTTAGTAGAATCCATACTAGACCTGGCCATTAATTTGCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

36.16

Weight (kDa)

4.94

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc16I	TGCGCA	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	234
AclWI	GGATC	3 cut(s)	650, 663, 827
AcoI	YGGCCR	1 cut(s)	912
AcuI	CTGAAG	4 cut(s)	333, 387, 632, 858
AcyI	GRCGYC	2 cut(s)	53, 235
AfaI	GTAC	2 cut(s)	176, 813
AgsI	TTSAA	7 cut(s)	100, 272, 301, 532, 577, 728, 859
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	909
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	8 cut(s)	22, 197, 223, 340, 351, 365, 395, 731
AluI	AGCT	8 cut(s)	22, 197, 223, 340, 351, 365, 395, 731
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	497, 550
AlwI	GGATC	3 cut(s)	650, 663, 827
AoxI	GGCC	1 cut(s)	912
ApeKI	GCWGC	4 cut(s)	32, 362, 395, 781
AseI	ATTAAT	1 cut(s)	918
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	4 cut(s)	32, 37, 237, 630
AspS9I	GGNCC	2 cut(s)	87, 707
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	87, 707
BalI	TGGCCA	1 cut(s)	914
BamHI	GGATCC	1 cut(s)	655
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	3 cut(s)	155, 218, 252
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	4 cut(s)	44, 374, 382, 768
BccI	CCATC	4 cut(s)	64, 424, 581, 590
BcgI	CGANNNNNNTGC	2 cut(s)	773, 807
BciT130I	CCWGG	1 cut(s)	911
BcoDI	GTCTC	2 cut(s)	497, 550
BfaI	CTAG	2 cut(s)	849, 905
BfoI	RGCGCY	2 cut(s)	38, 238
BisI	GCNGC	4 cut(s)	33, 363, 396, 782
BlpI	GCTNAGC	2 cut(s)	198, 798
BlsI	GCNGC	4 cut(s)	34, 364, 397, 783
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	911
Bme18I	GGWCC	2 cut(s)	87, 707
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	87, 707
BmiI	GGNNCC	2 cut(s)	236, 657
BmrFI	CCNGG	1 cut(s)	911
BmsI	GCATC	2 cut(s)	727, 763
BpiI	GAAGAC	3 cut(s)	155, 218, 252
Bpu1102I	GCTNAGC	2 cut(s)	198, 798
BsaHI	GRCGYC	2 cut(s)	53, 235
Bse1I	ACTGG	3 cut(s)	149, 194, 722
Bse3DI	GCAATG	2 cut(s)	776, 843
BseBI	CCWGG	1 cut(s)	911
BseGI	GGATG	1 cut(s)	484
BseMI	GCAATG	2 cut(s)	776, 843
BseMII	CTCAG	6 cut(s)	107, 212, 390, 513, 727, 789
BseNI	ACTGG	3 cut(s)	149, 194, 722
BseRI	GAGGAG	2 cut(s)	269, 272
BseXI	GCAGC	4 cut(s)	44, 374, 382, 768
BshFI	GGCC	1 cut(s)	914
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	497, 550
BsmI	GAATGC	2 cut(s)	623, 666
BsnI	GGCC	1 cut(s)	914
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	451, 568, 655, 832
Bsp1720I	GCTNAGC	2 cut(s)	198, 798
BspANI	GGCC	1 cut(s)	914
BspCNI	CTCAG	6 cut(s)	106, 211, 391, 514, 726, 790
BspLI	GGNNCC	2 cut(s)	236, 657
BspPI	GGATC	3 cut(s)	650, 663, 827
BspQI	GCTCTTC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	776, 843
BsrI	ACTGG	3 cut(s)	149, 194, 722
BssMI	GATC	4 cut(s)	451, 568, 655, 832
BssNI	GRCGYC	2 cut(s)	53, 235
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	911
Bst6I	CTCTTC	4 cut(s)	122, 246, 267, 372
BstACI	GRCGYC	2 cut(s)	53, 235
BstC8I	GCNNGC	2 cut(s)	75, 195
BstDEI	CTNAG	7 cut(s)	93, 198, 399, 522, 713, 798, 889
BstF5I	GGATG	1 cut(s)	484
BstH2I	RGCGCY	2 cut(s)	38, 238
BstHHI	GCGC	4 cut(s)	32, 37, 237, 630
BstKTI	GATC	4 cut(s)	454, 571, 658, 835
BstMAI	GTCTC	2 cut(s)	497, 550
BstMBI	GATC	4 cut(s)	451, 568, 655, 832
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 199, 548, 627, 737
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	909
BstV1I	GCAGC	4 cut(s)	44, 374, 382, 768
BstV2I	GAAGAC	3 cut(s)	155, 218, 252
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	914
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	1 cut(s)	932
Cac8I	GCNNGC	2 cut(s)	75, 195
CfoI	GCGC	4 cut(s)	32, 37, 237, 630
Cfr13I	GGNCC	2 cut(s)	87, 707
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	175, 812
CviAII	CATG	5 cut(s)	74, 292, 553, 584, 631
CviQI	GTAC	2 cut(s)	175, 812
DdeI	CTNAG	7 cut(s)	93, 198, 399, 522, 713, 798, 889
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	4 cut(s)	453, 570, 657, 834
DpnII	GATC	4 cut(s)	451, 568, 655, 832
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	4 cut(s)	122, 246, 267, 372
EarI	CTCTTC	4 cut(s)	122, 246, 267, 372
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	87, 707
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	4 cut(s)	333, 387, 632, 858
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	909
EcoT22I	ATGCAT	2 cut(s)	585, 778
EcoT38I	GRGCYC	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
FaeI	CATG	5 cut(s)	77, 295, 556, 587, 634
FatI	CATG	5 cut(s)	73, 291, 552, 583, 630
FauNDI	CATATG	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	33, 363, 396, 782
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	33, 363, 396, 782
FspBI	CTAG	2 cut(s)	849, 905
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	4 cut(s)	31, 36, 236, 629
GluI	GCNGC	4 cut(s)	33, 363, 396, 782
HaeII	RGCGCY	2 cut(s)	38, 238
HaeIII	GGCC	1 cut(s)	914
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	4 cut(s)	32, 37, 237, 630
Hin1I	GRCGYC	2 cut(s)	53, 235
Hin1II	CATG	5 cut(s)	77, 295, 556, 587, 634
Hin6I	GCGC	4 cut(s)	30, 35, 235, 628
HinP1I	GCGC	4 cut(s)	30, 35, 235, 628
HinfI	GANTC	2 cut(s)	442, 896
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	3 cut(s)	326, 336, 359
Hpy188III	TCNNGA	3 cut(s)	311, 494, 836
Hpy8I	GTNNAC	1 cut(s)	754
Hpy99I	CGWCG	3 cut(s)	55, 185, 465
HpyAV	CCTTC	9 cut(s)	152, 211, 225, 259, 295, 504, 596, 607, 698
HpyCH4IV	ACGT	3 cut(s)	26, 463, 877
HpyCH4V	TGCA	7 cut(s)	77, 583, 621, 776, 784, 821, 925
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 199, 548, 627, 737
HpyF3I	CTNAG	7 cut(s)	93, 198, 399, 522, 713, 798, 889
HpySE526I	ACGT	3 cut(s)	26, 463, 877
Hsp92I	GRCGYC	2 cut(s)	53, 235
Hsp92II	CATG	5 cut(s)	77, 295, 556, 587, 634
HspAI	GCGC	4 cut(s)	30, 35, 235, 628
KasI	GGCGCC	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	451, 568, 655, 832
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	4 cut(s)	44, 374, 382, 768
LweI	GCATC	2 cut(s)	727, 763
MaeI	CTAG	2 cut(s)	849, 905
MaeII	ACGT	3 cut(s)	26, 463, 877
MalI	GATC	4 cut(s)	453, 570, 657, 834
MboI	GATC	4 cut(s)	451, 568, 655, 832
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	2 cut(s)	384, 919
MluNI	TGGCCA	1 cut(s)	914
Mly113I	GGCGCC	1 cut(s)	235
Mox20I	TGGCCA	1 cut(s)	914
Mph1103I	ATGCAT	2 cut(s)	585, 778
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	1 cut(s)	918
Msp20I	TGGCCA	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	911
MteI	GCGCNGCGC	1 cut(s)	33
Mva1269I	GAATGC	2 cut(s)	623, 666
MvaI	CCWGG	1 cut(s)	911
MwoI	GCNNNNNNNGC	5 cut(s)	79, 199, 548, 627, 737
NarI	GGCGCC	1 cut(s)	235
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	4 cut(s)	451, 568, 655, 832
NlaIII	CATG	5 cut(s)	77, 295, 556, 587, 634
NlaIV	GGNNCC	2 cut(s)	236, 657
NsbI	TGCGCA	1 cut(s)	31
NsiI	ATGCAT	2 cut(s)	585, 778
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	2 cut(s)	623, 666
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	442, 896
PkrI	GCNGC	4 cut(s)	34, 364, 397, 783
PluTI	GGCGCC	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	2 cut(s)	236, 657
PspPI	GGNCC	2 cut(s)	87, 707
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	176, 813
RsaNI	GTAC	2 cut(s)	175, 812
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	4 cut(s)	33, 363, 396, 782
Sau3AI	GATC	4 cut(s)	451, 568, 655, 832
Sau96I	GGNCC	2 cut(s)	87, 707
ScaI	AGTACT	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	727, 763
SfoI	GGCGCC	1 cut(s)	236
SinI	GGWCC	2 cut(s)	87, 707
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	384, 919
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	849, 905
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	909
TaiI	ACGT	3 cut(s)	29, 466, 880
TaqI	TCGA	7 cut(s)	229, 347, 460, 495, 516, 594, 771
TasI	AATT	2 cut(s)	384, 919
TatI	WGTACW	2 cut(s)	174, 811
TfiI	GAWTC	2 cut(s)	442, 896
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	1 cut(s)	932
TseI	GCWGC	4 cut(s)	32, 362, 395, 781
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	87, 707
VspI	ATTAAT	1 cut(s)	918
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	2 cut(s)	849, 905
ZrmI	AGTACT	1 cut(s)	176
Zsp2I	ATGCAT	2 cut(s)	585, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.