Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Reverse (-)

8260201 .. 8268267

Gene Structure 8067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGGCGAGGGTGTTCCCGCTTACTAGCACATCACTTCCATTTTCACTTATTCCATCGGCTTCAACCTATCCAAGTCTTTGGCCCTCTCCTTTAAGACCCACATATGCACCTGGCACAGTCTTGAGGAGGAGCATGAAAAAGGAAGAGCCACTATTAGAAGGTCTTCCGAAAGAGTACTACGATGATGAATGGCAATCGCAACAAAGGGAGAAAACTAAGGAGTTTCATCGAAGACGTCAAGAGGAAGATGAAGAGGAGGAGAGAAAGATTGAAGAGTACCGTGAGATCGGCATGAGATTGAAGGATTATCCAGAAGAAGATGTTCGGAAAGCTCGGAAATTGATTTCCAGCTTTATTAGAGCGGCTGAAGAAGTGGAAGAGAAAATTGAGGAAGCTGGTGAGAAAGGGGAACTGACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGACCTCGCTCGACGGGATGATGAAAAGGATGTTATTAGAAGTCTTGATTTGCTATACAGAAGGATTGAGGCTGAGATCTTGAAACAGGAGGCCTCACCTGCCATGCGACTTCTCAACGATCTTTTAAATATGCATGATGGTTTTGATGATGAAGGGTGGCAGAAGGAATGTAAAAAGCGCATGATTGATACTTTTCCACGCGAGGATCCATTTAGCATTTTAGTTCCAGAAGGATTTGACATTGATAAGCACGAGGGACCTCTTCGGCCACCGCTTGAAGTAGATGACGCTCTATTGAGGGTAGACTTTGTAAGAGAGGTTGATGCACTGCTACAAGAGGTTCGGGCTGAGCAAAGCGAAGTACAAATTACACAAGGGCTTGATCCTGAATCCATTGCAAGTAGATTGAAGCAGCAGGAGAAGCAACGGGCCATACGGCTGGTATACATTATCATGTTTCACAATTGGGTTATTTGTGATGTTAATCCAACTTGTTTACTGTTTTCGGTGGAAGGTAAAGTCATTTATGAGTGCATTTCAACTAGTGATGAATCCAACTACACTAACTTCATGTTGGGTTCCAGACTTCCAGTCATGAAGTTCATAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

41.57

Weight (kDa)

4.87

Isoelectric Point (pI)

69.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	365
AccI	GTMKAC	2 cut(s)	756, 897
AccII	CGCG	1 cut(s)	654
AciI	CCGC	3 cut(s)	20, 365, 725
AclWI	GGATC	3 cut(s)	653, 666, 830
AcoI	YGGCCR	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	3 cut(s)	179, 281, 816
AgsI	TTSAA	7 cut(s)	66, 275, 304, 535, 731, 862, 993
AhdI	GACNNNNNGTC	1 cut(s)	1043
AhlI	ACTAGT	1 cut(s)	995
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	3 cut(s)	335, 354, 398
AluI	AGCT	3 cut(s)	335, 354, 398
AlwI	GGATC	3 cut(s)	653, 666, 830
AoxI	GGCC	4 cut(s)	83, 543, 719, 882
ApeKI	GCWGC	1 cut(s)	865
Asp700I	GAANNNNTTC	2 cut(s)	165, 324
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	84, 710, 882
AsuHPI	GGTGA	2 cut(s)	413, 540
AvaII	GGWCC	1 cut(s)	710
BamHI	GGATCC	1 cut(s)	658
BauI	CACGAG	1 cut(s)	704
BbsI	GAAGAC	2 cut(s)	158, 241
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	3 cut(s)	64, 427, 584
BceAI	ACGGC	1 cut(s)	905
BciT130I	CCWGG	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	995
BfaI	CTAG	2 cut(s)	27, 996
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	2 cut(s)	366, 866
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	2 cut(s)	367, 867
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	710
BmeRI	GACNNNNNGTC	1 cut(s)	1043
BmgT120I	GGNCC	3 cut(s)	84, 710, 882
BmiI	GGNNCC	3 cut(s)	660, 711, 1033
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	766
BpiI	GAAGAC	2 cut(s)	158, 241
Bpu1102I	GCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	1043
Bse3DI	GCAATG	1 cut(s)	846
Bse8I	GATNNNNATC	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	475, 487
BseJI	GATNNNNATC	1 cut(s)	936
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	2 cut(s)	516, 792
BseNI	ACTGG	1 cut(s)	1043
BseRI	GAGGAG	4 cut(s)	142, 145, 272, 275
BseXI	GCAGC	1 cut(s)	877
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	4 cut(s)	85, 545, 721, 884
BslFI	GGGAC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	4 cut(s)	85, 545, 721, 884
Bsp143I	GATC	5 cut(s)	288, 528, 571, 658, 835
Bsp1720I	GCTNAGC	1 cut(s)	801
BspACI	CCGC	3 cut(s)	20, 365, 725
BspANI	GGCC	4 cut(s)	85, 545, 721, 884
BspCNI	CTCAG	2 cut(s)	517, 793
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	1047
BspLI	GGNNCC	3 cut(s)	660, 711, 1033
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	653, 666, 830
BspQI	GCTCTTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	1043
BssMI	GATC	5 cut(s)	288, 528, 571, 658, 835
BssNAI	GTATAC	1 cut(s)	898
BssNI	GRCGYC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	704
Bst1107I	GTATAC	1 cut(s)	898
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	121, 284, 954
Bst6I	CTCTTC	5 cut(s)	141, 249, 270, 375, 720
BstACI	GRCGYC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	219, 525, 801
BstF5I	GGATG	2 cut(s)	475, 487
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	5 cut(s)	291, 531, 574, 661, 838
BstMBI	GATC	5 cut(s)	288, 528, 571, 658, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 874
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	877
BstV2I	GAAGAC	2 cut(s)	158, 241
BstX2I	RGATCY	2 cut(s)	528, 658
BstXI	CCANNNNNNTGG	2 cut(s)	81, 892
BstYI	RGATCY	2 cut(s)	528, 658
BstZ17I	GTATAC	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	85, 545, 721, 884
BtsCI	GGATG	2 cut(s)	475, 487
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	559
CciI	TCATGA	1 cut(s)	1047
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	3 cut(s)	84, 710, 882
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	3 cut(s)	178, 280, 815
CviAII	CATG	8 cut(s)	136, 295, 556, 587, 634, 907, 1024, 1048
CviQI	GTAC	3 cut(s)	178, 280, 815
DdeI	CTNAG	3 cut(s)	219, 525, 801
DpnI	GATC	5 cut(s)	290, 530, 573, 660, 837
DpnII	GATC	5 cut(s)	288, 528, 571, 658, 835
DraI	TTTAAA	1 cut(s)	579
DriI	GACNNNNNGTC	1 cut(s)	1043
EaeI	YGGCCR	1 cut(s)	719
Eam1104I	CTCTTC	5 cut(s)	141, 249, 270, 375, 720
Eam1105I	GACNNNNNGTC	1 cut(s)	1043
EarI	CTCTTC	5 cut(s)	141, 249, 270, 375, 720
Eco147I	AGGCCT	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	588
FaeI	CATG	8 cut(s)	139, 298, 559, 590, 637, 910, 1027, 1051
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	8 cut(s)	135, 294, 555, 586, 633, 906, 1023, 1047
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	2 cut(s)	106, 440
FblI	GTMKAC	2 cut(s)	756, 897
Fnu4HI	GCNGC	2 cut(s)	366, 866
FokI	GGATG	2 cut(s)	482, 494
Fsp4HI	GCNGC	2 cut(s)	366, 866
FspBI	CTAG	2 cut(s)	27, 996
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	366, 866
HaeIII	GGCC	4 cut(s)	85, 545, 721, 884
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	1 cut(s)	633
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	8 cut(s)	139, 298, 559, 590, 637, 910, 1027, 1051
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	445, 842, 1004
HphI	GGTGA	2 cut(s)	413, 540
Hpy166II	GTNNAC	3 cut(s)	757, 898, 950
Hpy188I	TCNGA	3 cut(s)	171, 330, 339
Hpy188III	TCNNGA	9 cut(s)	124, 242, 314, 497, 532, 680, 839, 1035, 1048
Hpy8I	GTNNAC	3 cut(s)	757, 898, 950
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	7 cut(s)	155, 298, 507, 599, 610, 677, 959
HpyCH4III	ACNGT	3 cut(s)	121, 284, 954
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	5 cut(s)	110, 586, 779, 851, 987
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 874
HpyF3I	CTNAG	3 cut(s)	219, 525, 801
HpySE526I	ACGT	1 cut(s)	238
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	8 cut(s)	139, 298, 559, 590, 637, 910, 1027, 1051
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	5 cut(s)	288, 528, 571, 658, 835
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	2 cut(s)	27, 996
MaeII	ACGT	1 cut(s)	238
MalI	GATC	5 cut(s)	290, 530, 573, 660, 837
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	5 cut(s)	288, 528, 571, 658, 835
MfeI	CAATTG	1 cut(s)	916
MflI	RGATCY	2 cut(s)	528, 658
MluCI	AATT	4 cut(s)	341, 387, 819, 916
MmeI	TCCRAC	2 cut(s)	965, 1032
Mph1103I	ATGCAT	1 cut(s)	588
MroXI	GAANNNNTTC	2 cut(s)	165, 324
MseI	TTAA	4 cut(s)	95, 578, 936, 1063
MslI	CAYNNNNRTG	1 cut(s)	905
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	551, 874
NdeI	CATATG	2 cut(s)	106, 440
NdeII	GATC	5 cut(s)	288, 528, 571, 658, 835
NlaIII	CATG	8 cut(s)	139, 298, 559, 590, 637, 910, 1027, 1051
NlaIV	GGNNCC	3 cut(s)	660, 711, 1033
NsiI	ATGCAT	1 cut(s)	588
PagI	TCATGA	1 cut(s)	1047
PaqCI	CACCTGC	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	165, 324
PfeI	GAWTC	3 cut(s)	445, 842, 1004
PkrI	GCNGC	2 cut(s)	367, 867
PpuMI	RGGWCCY	1 cut(s)	710
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	660, 711, 1033
PspPI	GGNCC	3 cut(s)	84, 710, 882
PspPPI	RGGWCCY	1 cut(s)	710
PsuI	RGATCY	2 cut(s)	528, 658
RsaI	GTAC	3 cut(s)	179, 281, 816
RsaNI	GTAC	3 cut(s)	178, 280, 815
RseI	CAYNNNNRTG	1 cut(s)	905
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	95, 578, 936, 1063
SatI	GCNGC	2 cut(s)	366, 866
Sau3AI	GATC	5 cut(s)	288, 528, 571, 658, 835
Sau96I	GGNCC	3 cut(s)	84, 710, 882
ScaI	AGTACT	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	766
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SpeI	ACTAGT	1 cut(s)	995
Sse9I	AATT	4 cut(s)	341, 387, 819, 916
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	3 cut(s)	20, 365, 725
SspMI	CTAG	2 cut(s)	27, 996
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	121, 284, 954
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	232, 463
TasI	AATT	4 cut(s)	341, 387, 819, 916
TatI	WGTACW	2 cut(s)	177, 814
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	445, 842, 1004
Tru1I	TTAA	4 cut(s)	95, 578, 936, 1063
Tru9I	TTAA	4 cut(s)	95, 578, 936, 1063
TscAI	CASTG	1 cut(s)	786
TseI	GCWGC	1 cut(s)	865
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	710
XmiI	GTMKAC	2 cut(s)	756, 897
XmnI	GAANNNNTTC	2 cut(s)	165, 324
XspI	CTAG	2 cut(s)	27, 996
ZraI	GACGTC	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.