Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032428.1

Orthogroup ID

OG0007706

Physical Location & Seq

Genomic Coordinates Forward (+)

2320 .. 4045

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggaggcgagggtgttcccgcttactagcacatcacttccgttttcacttattccatcgtcttcaacctatccaagtctttggccttcccctttaagacccacatatgcacctggcacagtcttgaggaggagcatgaaaaaggaagagccactattagaaggtcttccgaaagagtactacgatgatgaatggcaatcgcaacaaagggagaaaactaaggagtttcatcgaagacgtcaagaggaggacgaagaggaggagagaaagattgaagagtaccgtgagatcggcatgagattgaaggattatccggaagaagatgttcggaaagctcggaaattgatttccagctttattagagcggctgaagaagtagaagagaaaattgaggaagctggtgagaaaggggaactgactgaacttgttttgatggtcatatggaatcgccttgacctcgctcgacgggatgatgaaaaggatgttattagaagtcttgatttgctatacagaaggattgaggctgagattttgaaacaggaggcgtcacctgccatgcgacttctcaacgatcttttaaatatgcatgatggttttgatgatgaagagtggcagaaggaatgtaaaaagcgcatgatcgatacatttccacgtgaggatccatttagcattttagttccagaaggatttgacattgataaggtatgctgtaattttgctgattccaggcttataatcaagttggtttcagatcactacttttctacagctttgaatttctgcccttgggtttcagtattgaatcgttacgaaatcctagctcgtaaaggttattttctgggttattcttatatctatatcaaaatggtgggggttgcattttgttggtttttaaagcagatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

35.77

Weight (kDa)

5.11

Isoelectric Point (pI)

71.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48120 AT2G48120
fragaria_vesca	FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610 FvH4_7g02610
malus_domestica	MD03G1268900.v1.1 MD11G1289700.v1.1
prunus_persica	Prupe.8G244900_v2.0.a1
pyrus_communis	pycom03g21470 pycom11g25710
rosa_chinensis	RchiOBHm_Chr1g0321311
rosa_laevigata	RLG00000030430
rosa_multiflora	Rmu_sc0000724.1_g000003 Rmu_sc0032428.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327840
rosa_rugosa	Rorug01G0031900 Rorug01G0032000
rosa_samantha	Rh1AG044100 Rh1BG041800 Rh1CG046800 Rh1DG051300
rosa_wichuraiana	Rw1G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AarI	CACCTGC	1 cut(s)	559
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	365
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	2 cut(s)	20, 365
AclWI	GGATC	2 cut(s)	653, 666
AcsI	RAATTY	1 cut(s)	775
AcuI	CTGAAG	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	653
AcyI	GRCGYC	2 cut(s)	238, 545
AfaI	GTAC	2 cut(s)	179, 281
AgsI	TTSAA	6 cut(s)	66, 275, 304, 535, 775, 802
AjnI	CCWGG	2 cut(s)	112, 725
AluBI	AGCT	5 cut(s)	335, 354, 398, 770, 821
AluI	AGCT	5 cut(s)	335, 354, 398, 770, 821
AlwI	GGATC	2 cut(s)	653, 666
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	775
Asp700I	GAANNNNTTC	2 cut(s)	165, 324
AspLEI	GCGC	1 cut(s)	633
AsuHPI	GGTGA	2 cut(s)	413, 540
BamHI	GGATCC	1 cut(s)	658
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	3 cut(s)	54, 158, 241
BccI	CCATC	3 cut(s)	64, 427, 584
BciT130I	CCWGG	2 cut(s)	114, 727
BfaI	CTAG	2 cut(s)	27, 818
BfmI	CTRYAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	900
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	114, 727
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	2 cut(s)	114, 727
BpiI	GAAGAC	3 cut(s)	54, 158, 241
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	639
BsaAI	YACGTR	1 cut(s)	653
BsaHI	GRCGYC	2 cut(s)	238, 545
BsaJI	CCNNGG	1 cut(s)	785
BsaWI	WCCGGW	1 cut(s)	313
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	114, 727
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	2 cut(s)	475, 487
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	5 cut(s)	142, 145, 260, 272, 275
BshFI	GGCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	314
BsnI	GGCC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
BspACI	CCGC	2 cut(s)	20, 365
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	639
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	653, 666
BspQI	GCTCTTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
BssNI	GRCGYC	2 cut(s)	238, 545
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	2 cut(s)	114, 727
Bst4CI	ACNGT	2 cut(s)	121, 284
Bst6I	CTCTTC	5 cut(s)	141, 249, 270, 375, 600
BstACI	GRCGYC	2 cut(s)	238, 545
BstBAI	YACGTR	1 cut(s)	653
BstDEI	CTNAG	2 cut(s)	219, 525
BstF5I	GGATG	2 cut(s)	475, 487
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	6 cut(s)	291, 574, 639, 661, 754, 903
BstMBI	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	114, 727
BstSCI	CCNGG	2 cut(s)	112, 725
BstSFI	CTRYAG	1 cut(s)	765
BstV2I	GAAGAC	3 cut(s)	54, 158, 241
BstX2I	RGATCY	2 cut(s)	658, 900
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	2 cut(s)	658, 900
Bsu15I	ATCGAT	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	475, 487
BveI	ACCTGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	633
ClaI	ATCGAT	1 cut(s)	639
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	178, 280
CviAII	CATG	5 cut(s)	136, 295, 556, 587, 634
CviQI	GTAC	2 cut(s)	178, 280
DdeI	CTNAG	2 cut(s)	219, 525
DpnI	GATC	6 cut(s)	290, 573, 638, 660, 753, 902
DpnII	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
DraI	TTTAAA	2 cut(s)	579, 894
Eam1104I	CTCTTC	5 cut(s)	141, 249, 270, 375, 600
EarI	CTCTTC	5 cut(s)	141, 249, 270, 375, 600
Eco130I	CCWWGG	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	390
Eco72I	CACGTG	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	112, 725
EcoT14I	CCWWGG	1 cut(s)	785
EcoT22I	ATGCAT	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	5 cut(s)	139, 298, 559, 590, 637
FatI	CATG	5 cut(s)	135, 294, 555, 586, 633
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	2 cut(s)	106, 440
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	2 cut(s)	482, 494
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	27, 818
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	633
Hin1I	GRCGYC	2 cut(s)	238, 545
Hin1II	CATG	5 cut(s)	139, 298, 559, 590, 637
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	445, 722, 802
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	2 cut(s)	413, 540
Hpy188I	TCNGA	4 cut(s)	171, 330, 339, 751
Hpy188III	TCNNGA	5 cut(s)	124, 242, 314, 497, 680
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	6 cut(s)	96, 155, 298, 507, 610, 677
HpyCH4III	ACNGT	2 cut(s)	121, 284
HpyCH4IV	ACGT	2 cut(s)	238, 652
HpyCH4V	TGCA	3 cut(s)	110, 586, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	219, 525
HpySE526I	ACGT	2 cut(s)	238, 652
Hsp92I	GRCGYC	2 cut(s)	238, 545
Hsp92II	CATG	5 cut(s)	139, 298, 559, 590, 637
HspAI	GCGC	1 cut(s)	631
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	27, 818
MaeII	ACGT	2 cut(s)	238, 652
MaeIII	GTNAC	2 cut(s)	546, 806
MalI	GATC	6 cut(s)	290, 573, 638, 660, 753, 902
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
MflI	RGATCY	2 cut(s)	658, 900
MluCI	AATT	4 cut(s)	341, 387, 712, 775
Mph1103I	ATGCAT	1 cut(s)	588
MroI	TCCGGA	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	165, 324
MseI	TTAA	3 cut(s)	95, 578, 893
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	114, 727
MvaI	CCWGG	2 cut(s)	114, 727
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeI	CATATG	2 cut(s)	106, 440
NdeII	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
NlaIII	CATG	5 cut(s)	139, 298, 559, 590, 637
NlaIV	GGNNCC	1 cut(s)	660
NmuCI	GTSAC	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	588
PaqCI	CACCTGC	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	165, 324
PfeI	GAWTC	3 cut(s)	445, 722, 802
PkrI	GCNGC	1 cut(s)	367
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
Ppu21I	YACGTR	1 cut(s)	653
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	112, 725
PspCI	CACGTG	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	112, 725
PspN4I	GGNNCC	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	658, 900
RsaI	GTAC	2 cut(s)	179, 281
RsaNI	GTAC	2 cut(s)	178, 280
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	95, 578, 893
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	6 cut(s)	288, 571, 636, 658, 751, 900
ScaI	AGTACT	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	114, 727
SfcI	CTRYAG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	341, 387, 712, 775
SsiI	CCGC	2 cut(s)	20, 365
SspMI	CTAG	2 cut(s)	27, 818
StyD4I	CCNGG	2 cut(s)	112, 725
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	2 cut(s)	121, 284
TaiI	ACGT	2 cut(s)	241, 655
TaqI	TCGA	3 cut(s)	232, 463, 639
TasI	AATT	4 cut(s)	341, 387, 712, 775
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	445, 722, 802
Tru1I	TTAA	3 cut(s)	95, 578, 893
Tru9I	TTAA	3 cut(s)	95, 578, 893
TseFI	GTSAC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	5 cut(s)	152, 204, 218, 489, 618
TspGWI	ACGGA	1 cut(s)	30
XapI	RAATTY	1 cut(s)	775
XmnI	GAANNNNTTC	2 cut(s)	165, 324
XspI	CTAG	2 cut(s)	27, 818
ZraI	GACGTC	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.