AT3G01210

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007692
Physical Location & Seq
Forward (+)
71556 .. 73407
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01210.2

Sequence Viewer

Length: 750 bp
ATGTATCCTTGTGGTTACGTTGCTCAAGTCACCAACTTGTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGAGCTCGTTGAAATCACCGGGTGCCAAGGGGATGCATTAACGGCTTATGTAACCTTCAGAGATGCGTATGCTCTGGATATGGCTGTGTTACTTAGCGGAGCTACGATCGTTGATCAAACCGTTTGGATATCGGTCTACGGTGTCTATTTACATGAATCTAACAATCTCAGACAAGAAGAAGACTATAGTGTTACGGTGACTCGTTCAGACGCGTTTGCTTCATCGCCTGGAGAGGCCATAACCGTGGCTCAACAAGTTGTGCAGACGATGTTAGCTAAAGGCTACGTTTTAAGCAAAGACGCGATTGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTTTCAAGCTTGGTAGCGACCAAATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAACTCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACTAAATCCGCGGTTCTTGTCACGGGCACAGCTGCTGTAGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAGCGACTAGTGTGGTCAACAGTCGTTACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTTTGGGCCGGGCTGCAAAAGCAGCGGCCCATATCGGTGGAGGAGGAAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

249

Amino Acids

26.41

Weight (kDa)

5.65

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 231
AccII CGCG 3 cut(s) 308, 398, 569
AciI CCGC 6 cut(s) 192, 530, 567, 569, 600, 719
AcuI CTGAAG 1 cut(s) 136
AdeI CACNNNGTG 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 615
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 107, 441
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 7 cut(s) 100, 197, 371, 416, 444, 590, 632
AluI AGCT 7 cut(s) 100, 197, 371, 416, 444, 590, 632
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 45, 432
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 4 cut(s) 330, 484, 700, 720
ApeKI GCWGC 8 cut(s) 590, 602, 626, 629, 632, 635, 707, 716
AspS9I GGNCC 2 cut(s) 700, 721
AsuC2I CCSGG 2 cut(s) 115, 704
AsuHPI GGTGA 3 cut(s) 22, 103, 304
BaeGI GKGCMC 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 73, 106
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 8 cut(s) 577, 613, 614, 619, 641, 647, 694, 728
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 115, 704
BcoDI GTCTC 2 cut(s) 45, 432
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 4 cut(s) 280, 594, 627, 633
BfuI GTATCC 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 115, 324, 704
BmgT120I GGNCC 2 cut(s) 700, 721
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 3 cut(s) 115, 324, 704
BmsI GCATC 3 cut(s) 118, 148, 682
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 9, 30
BpuMI CCSGG 2 cut(s) 115, 704
BsaJI CCNNGG 4 cut(s) 121, 339, 481, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 4 cut(s) 121, 339, 481, 567
BseGI GGATG 2 cut(s) 133, 427
BseLI CCNNNNNNNGG 1 cut(s) 615
BseMII CTCAG 4 cut(s) 45, 277, 443, 702
BseRI GAGGAG 2 cut(s) 33, 750
BseSI GKGCMC 1 cut(s) 587
BseXI GCAGC 8 cut(s) 577, 613, 614, 619, 641, 647, 694, 728
BsgI GTGCAG 1 cut(s) 377
Bsh1236I CGCG 3 cut(s) 308, 398, 569
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 4 cut(s) 332, 486, 702, 722
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 114, 703
BslI CCNNNNNNNGG 1 cut(s) 615
BsmAI GTCTC 2 cut(s) 45, 432
BsnI GGCC 4 cut(s) 332, 486, 702, 722
Bsp1286I GDGCHC 2 cut(s) 102, 587
Bsp143I GATC 4 cut(s) 201, 208, 468, 524
BspACI CCGC 6 cut(s) 192, 530, 567, 569, 600, 719
BspANI GGCC 4 cut(s) 332, 486, 702, 722
BspCNI CTCAG 4 cut(s) 46, 276, 442, 701
BspFNI CGCG 3 cut(s) 308, 398, 569
BspLI GGNNCC 1 cut(s) 119
BspMAI CTGCAG 2 cut(s) 631, 637
BspT107I GGYRCC 1 cut(s) 117
BssECI CCNNGG 4 cut(s) 121, 339, 481, 567
BssMI GATC 4 cut(s) 201, 208, 468, 524
BssSI CACGAG 1 cut(s) 518
BssT1I CCWWGG 2 cut(s) 121, 481
Bst2BI CACGAG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 6 cut(s) 86, 217, 236, 292, 340, 656
BstDEI CTNAG 5 cut(s) 54, 188, 263, 429, 688
BstDSI CCRYGG 2 cut(s) 339, 567
BstF5I GGATG 2 cut(s) 133, 427
BstFNI CGCG 3 cut(s) 308, 398, 569
BstKTI GATC 4 cut(s) 204, 211, 471, 527
BstMAI GTCTC 2 cut(s) 45, 432
BstMBI GATC 4 cut(s) 201, 208, 468, 524
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 8 cut(s) 137, 596, 599, 632, 635, 674, 713, 716
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 113, 322, 702
BstSFI CTRYAG 4 cut(s) 280, 594, 627, 633
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 3 cut(s) 308, 398, 569
BstV1I GCAGC 8 cut(s) 577, 613, 614, 619, 641, 647, 694, 728
BstV2I GAAGAC 1 cut(s) 282
BstXI CCANNNNNNTGG 4 cut(s) 340, 418, 482, 731
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 332, 486, 702, 722
BtgI CCRYGG 2 cut(s) 339, 567
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 133, 427
BtsIMutI CAGTG 2 cut(s) 51, 82
CaiI CAGNNNCTG 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 700, 721
Cfr42I CCGCGG 1 cut(s) 570
CseI GACGC 2 cut(s) 314, 404
CviAII CATG 1 cut(s) 248
DdeI CTNAG 5 cut(s) 54, 188, 263, 429, 688
DpnI GATC 4 cut(s) 203, 210, 470, 526
DpnII GATC 4 cut(s) 201, 208, 468, 524
DraIII CACNNNGTG 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 121, 481
Eco24I GRGCYC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 121, 481
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 121, 481
FaeI CATG 1 cut(s) 251
FatI CATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 231
FokI GGATG 2 cut(s) 140, 434
FriOI GRGCYC 1 cut(s) 102
FspBI CTAG 1 cut(s) 642
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 4 cut(s) 332, 486, 702, 722
HapII CCGG 2 cut(s) 114, 703
HgaI GACGC 2 cut(s) 314, 404
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 2 cut(s) 414, 442
HinfI GANTC 3 cut(s) 251, 295, 425
HpaII CCGG 2 cut(s) 114, 703
HphI GGTGA 3 cut(s) 22, 103, 304
Hpy166II GTNNAC 2 cut(s) 232, 652
Hpy188I TCNGA 6 cut(s) 155, 266, 304, 432, 553, 691
Hpy188III TCNNGA 2 cut(s) 170, 520
Hpy8I GTNNAC 2 cut(s) 232, 652
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 6 cut(s) 86, 217, 236, 292, 340, 656
HpyCH4IV ACGT 2 cut(s) 18, 381
HpyCH4V TGCA 5 cut(s) 131, 358, 629, 635, 710
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 596, 599, 632, 635, 674, 713, 716
HpyF3I CTNAG 5 cut(s) 54, 188, 263, 429, 688
HpySE526I ACGT 2 cut(s) 18, 381
Hsp92II CATG 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 208
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 4 cut(s) 201, 208, 468, 524
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 127, 155, 309, 336, 600, 716
Lsp1109I GCAGC 8 cut(s) 577, 613, 614, 619, 641, 647, 694, 728
LweI GCATC 3 cut(s) 118, 148, 682
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 18, 381
MaeIII GTNAC 8 cut(s) 14, 28, 145, 183, 286, 292, 577, 659
MalI GATC 4 cut(s) 203, 210, 470, 526
MboI GATC 4 cut(s) 201, 208, 468, 524
MboII GAAGA 3 cut(s) 67, 284, 287
MfeI CAATTG 1 cut(s) 745
MhlI GDGCHC 2 cut(s) 102, 587
MluCI AATT 2 cut(s) 458, 745
MluI ACGCGT 1 cut(s) 306
MlyI GAGTC 2 cut(s) 289, 434
MnlI CCTC 5 cut(s) 54, 322, 497, 728, 731
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 2 cut(s) 134, 386
MslI CAYNNNNRTG 2 cut(s) 338, 729
MspA1I CMGCKG 5 cut(s) 530, 569, 590, 632, 719
MspI CCGG 2 cut(s) 114, 703
MspR9I CCNGG 3 cut(s) 115, 324, 704
MunI CAATTG 1 cut(s) 745
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 3 cut(s) 308, 398, 569
MwoI GCNNNNNNNGC 8 cut(s) 137, 596, 599, 632, 635, 674, 713, 716
NciI CCSGG 2 cut(s) 115, 704
NdeII GATC 4 cut(s) 201, 208, 468, 524
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 3 cut(s) 28, 292, 577
NsiI ATGCAT 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 251
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 2 cut(s) 289, 433
PpsI GAGTC 2 cut(s) 289, 433
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 2 cut(s) 700, 721
PstI CTGCAG 2 cut(s) 631, 637
PstNI CAGNNNCTG 1 cut(s) 593
PvuI CGATCG 1 cut(s) 204
PvuII CAGCTG 2 cut(s) 590, 632
RseI CAYNNNNRTG 2 cut(s) 338, 729
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 570
SaqAI TTAA 2 cut(s) 134, 386
Sau3AI GATC 4 cut(s) 201, 208, 468, 524
Sau96I GGNCC 2 cut(s) 700, 721
SchI GAGTC 2 cut(s) 289, 434
ScrFI CCNGG 3 cut(s) 115, 324, 704
SduI GDGCHC 2 cut(s) 102, 587
SfaNI GCATC 3 cut(s) 118, 148, 682
SfcI CTRYAG 4 cut(s) 280, 594, 627, 633
Sfr303I CCGCGG 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 338, 729
SmlI CTYRAG 2 cut(s) 24, 45
SmoI CTYRAG 2 cut(s) 24, 45
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 2 cut(s) 458, 745
SsiI CCGC 6 cut(s) 192, 530, 567, 569, 600, 719
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 113, 322, 702
StyI CCWWGG 2 cut(s) 121, 481
TaaI ACNGT 6 cut(s) 86, 217, 236, 292, 340, 656
TaiI ACGT 2 cut(s) 21, 384
TaqI TCGA 2 cut(s) 96, 506
TaqII GACCGA 1 cut(s) 217
TasI AATT 2 cut(s) 458, 745
TauI GCSGC 2 cut(s) 602, 722
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 134, 386
Tru9I TTAA 2 cut(s) 134, 386
TscAI CASTG 2 cut(s) 58, 89
TseFI GTSAC 3 cut(s) 28, 292, 577
TseI GCWGC 8 cut(s) 590, 602, 626, 629, 632, 635, 707, 716
Tsp45I GTSAC 3 cut(s) 28, 292, 577
TspDTI ATGAA 3 cut(s) 56, 264, 306
TspRI CASTG 2 cut(s) 58, 89
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.