Rroxscaffold_2G00082650

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007692
Physical Location & Seq
Reverse (-)
5429732 .. 5432697
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082650.1

Sequence Viewer

Length: 765 bp
ATGTACCCTGGTGGTTACACTGCTGAAGTTACGAGCTTATCCACTAAAGCTACTGAGAAGGATGTTTACGATTTCTTCAGTCACTGTGGTGCAGTTGAGCATGTCGAAATCATGAGATCTGGTGAATATACCTGTGCTGCATATGTGACATTCAGAGATGCTTATGCTCTTGAAACTGCTATTTTGCTCAGTGGAGCCAGGATTGTTGATCAATGTGTATGCATAGCACGCTGGGGAAATTATGTTGATGAGGTTGATTCTTGGCACAGTCCCGCGTACAACTCTGAAAACCACAGTAGCTCAACGGCTATTCACACAAGCCAGTTCGTTTCTAGCCCTGGAGAGGCAGTAACTGTTGCTCAGGAAGTTGTCAGAACATTGGTAGCCAAGGGATATGTTCTGGGACAAGATGCATTAGTCAAGGCGAAAGCTCTTGATGAGTCCTATCAAGTATCAGCTACTGCAGCAGCCAAGGTTTATGAGCTTAGCAATCGAATAGGGCTCACCGAGAGAATTCAAGAAGGCAGGGAAGTTGTTAAGTCACTAGACGAGAACTTCCATGTTTCAGATATTACCAAATCGGCTGCAACTGCTACTGGAACGGCAGTAGTGGTAGCAGCAACAGTTACCGGGAGAGCAGCCTTAGCAGCAGGAAGCGCTGTAGTGAACAGCAGCTACTTTGCCAAGGGAGCTCTTTGGGTTTCGGACATGTTGACTCGTGCAGGCAAAGCTGCAGCTGATTTGGGCAGTCATGACAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

254

Amino Acids

26.97

Weight (kDa)

5.36

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 70 3.8e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 275
AciI CCGC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 2 cut(s) 45, 61
AfaI GTAC 2 cut(s) 5, 278
AfeI AGCGCT 1 cut(s) 658
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 2 cut(s) 173, 518
AjnI CCWGG 3 cut(s) 7, 197, 337
AleI CACNNNNGTG 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 694
AlwNI CAGNNNCTG 3 cut(s) 84, 353, 461
Aor51HI AGCGCT 1 cut(s) 658
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 1 cut(s) 659
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 2 cut(s) 134, 496
BanII GRGCYC 2 cut(s) 504, 694
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BauI CACGAG 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 694
BceAI ACGGC 2 cut(s) 321, 618
BciT130I CCWGG 3 cut(s) 9, 199, 339
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 631
BfaI CTAG 2 cut(s) 333, 545
BfmI CTRYAG 3 cut(s) 462, 660, 732
BfoI RGCGCY 1 cut(s) 660
BglII AGATCT 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 485
Bme1390I CCNGG 4 cut(s) 9, 199, 339, 631
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 4 cut(s) 9, 199, 339, 631
BmsI GCATC 2 cut(s) 148, 400
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 2 cut(s) 360, 643
Bpu1102I GCTNAGC 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 631
BsaJI CCNNGG 5 cut(s) 7, 337, 387, 471, 684
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 322, 601
BseBI CCWGG 3 cut(s) 9, 199, 339
BseDI CCNNGG 5 cut(s) 7, 337, 387, 471, 684
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 3 cut(s) 45, 202, 374
BseNI ACTGG 2 cut(s) 322, 601
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 2 cut(s) 111, 741
Bsh1236I CGCG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 2 cut(s) 255, 417
BslI CCNNNNNNNGG 1 cut(s) 343
BsmFI GGGAC 2 cut(s) 255, 417
Bsp1286I GDGCHC 2 cut(s) 504, 694
Bsp143I GATC 2 cut(s) 116, 208
Bsp1720I GCTNAGC 1 cut(s) 485
BspACI CCGC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 46, 201, 373
BspFNI CGCG 1 cut(s) 275
BspHI TCATGA 2 cut(s) 111, 751
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 2 cut(s) 466, 736
BsrI ACTGG 2 cut(s) 322, 601
BssECI CCNNGG 5 cut(s) 7, 337, 387, 471, 684
BssMI GATC 2 cut(s) 116, 208
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 3 cut(s) 387, 471, 684
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 3 cut(s) 9, 199, 339
Bst4CI ACNGT 6 cut(s) 86, 269, 296, 355, 625, 758
BstC8I GCNNGC 2 cut(s) 229, 724
BstDEI CTNAG 5 cut(s) 54, 188, 360, 485, 643
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 2 cut(s) 119, 211
BstMBI GATC 2 cut(s) 116, 208
BstMWI GCNNNNNNNGC 8 cut(s) 228, 464, 590, 644, 647, 656, 689, 728
BstNI CCWGG 3 cut(s) 9, 199, 339
BstNSI RCATGY 2 cut(s) 104, 712
BstSCI CCNGG 4 cut(s) 7, 197, 337, 629
BstSFI CTRYAG 3 cut(s) 462, 660, 732
BstUI CGCG 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 82, 196
Cac8I GCNNGC 2 cut(s) 229, 724
CaiI CAGNNNCTG 3 cut(s) 84, 353, 461
CciI TCATGA 2 cut(s) 111, 751
CfoI GCGC 1 cut(s) 659
Csp6I GTAC 2 cut(s) 4, 277
CviAII CATG 5 cut(s) 101, 112, 560, 709, 752
CviQI GTAC 2 cut(s) 4, 277
DdeI CTNAG 5 cut(s) 54, 188, 360, 485, 643
DpnI GATC 2 cut(s) 118, 210
DpnII GATC 2 cut(s) 116, 208
Ecl136II GAGCTC 1 cut(s) 692
Eco130I CCWWGG 3 cut(s) 387, 471, 684
Eco24I GRGCYC 2 cut(s) 504, 694
Eco47III AGCGCT 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 692
Eco57I CTGAAG 2 cut(s) 45, 61
EcoICRI GAGCTC 1 cut(s) 692
EcoRI GAATTC 1 cut(s) 513
EcoRII CCWGG 3 cut(s) 7, 197, 337
EcoT14I CCWWGG 3 cut(s) 387, 471, 684
EcoT22I ATGCAT 2 cut(s) 224, 415
EcoT38I GRGCYC 2 cut(s) 504, 694
ErhI CCWWGG 3 cut(s) 387, 471, 684
FaeI CATG 5 cut(s) 104, 115, 563, 712, 755
FaqI GGGAC 2 cut(s) 255, 417
FatI CATG 5 cut(s) 100, 111, 559, 708, 751
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 208
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 504, 694
FspBI CTAG 2 cut(s) 333, 545
GlaI GCGC 1 cut(s) 658
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 660
HapII CCGG 1 cut(s) 630
HhaI GCGC 1 cut(s) 659
Hin1II CATG 5 cut(s) 104, 115, 563, 712, 755
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HinfI GANTC 3 cut(s) 257, 440, 715
HpaII CCGG 1 cut(s) 630
HphI GGTGA 2 cut(s) 134, 496
Hpy166II GTNNAC 3 cut(s) 67, 667, 714
Hpy188I TCNGA 5 cut(s) 155, 286, 374, 568, 706
Hpy188III TCNNGA 6 cut(s) 112, 170, 362, 434, 518, 752
Hpy8I GTNNAC 3 cut(s) 67, 667, 714
HpyAV CCTTC 2 cut(s) 52, 515
HpyCH4III ACNGT 6 cut(s) 86, 269, 296, 355, 625, 758
HpyCH4V TGCA 8 cut(s) 92, 140, 222, 413, 464, 587, 722, 734
HpyF10VI GCNNNNNNNGC 8 cut(s) 228, 464, 590, 644, 647, 656, 689, 728
HpyF3I CTNAG 5 cut(s) 54, 188, 360, 485, 643
Hsp92II CATG 5 cut(s) 104, 115, 563, 712, 755
HspAI GCGC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 116, 208
LmnI GCTCC 2 cut(s) 194, 689
LweI GCATC 2 cut(s) 148, 400
MaeI CTAG 2 cut(s) 333, 545
MaeIII GTNAC 7 cut(s) 14, 28, 80, 145, 349, 540, 625
MalI GATC 2 cut(s) 118, 210
MboI GATC 2 cut(s) 116, 208
MboII GAAGA 1 cut(s) 67
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 504, 694
MluCI AATT 2 cut(s) 238, 513
MlyI GAGTC 2 cut(s) 449, 709
MnlI CCTC 2 cut(s) 244, 337
Mph1103I ATGCAT 2 cut(s) 224, 415
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 4 cut(s) 9, 199, 339, 631
MvaI CCWGG 3 cut(s) 9, 199, 339
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 8 cut(s) 228, 464, 590, 644, 647, 656, 689, 728
NciI CCSGG 1 cut(s) 631
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 116, 208
NlaIII CATG 5 cut(s) 104, 115, 563, 712, 755
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 3 cut(s) 80, 145, 540
NsiI ATGCAT 2 cut(s) 224, 415
NspI RCATGY 2 cut(s) 104, 712
OliI CACNNNNGTG 1 cut(s) 87
PagI TCATGA 2 cut(s) 111, 751
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 2 cut(s) 448, 709
PpsI GAGTC 2 cut(s) 448, 709
PscI ACATGT 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 694
Psp6I CCWGG 3 cut(s) 7, 197, 337
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 3 cut(s) 7, 197, 337
PspN4I GGNNCC 1 cut(s) 196
PsrI GAACNNNNNNTAC 2 cut(s) 659, 691
PstI CTGCAG 2 cut(s) 466, 736
PstNI CAGNNNCTG 3 cut(s) 84, 353, 461
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 5, 278
RsaNI GTAC 2 cut(s) 4, 277
RseI CAYNNNNRTG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 694
SaqAI TTAA 1 cut(s) 537
Sau3AI GATC 2 cut(s) 116, 208
SchI GAGTC 2 cut(s) 449, 709
ScrFI CCNGG 4 cut(s) 9, 199, 339, 631
SduI GDGCHC 2 cut(s) 504, 694
SfaNI GCATC 2 cut(s) 148, 400
SfcI CTRYAG 3 cut(s) 462, 660, 732
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 2 cut(s) 238, 513
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 333, 545
SstI GAGCTC 1 cut(s) 694
StyD4I CCNGG 4 cut(s) 7, 197, 337, 629
StyI CCWWGG 3 cut(s) 387, 471, 684
TaaI ACNGT 6 cut(s) 86, 269, 296, 355, 625, 758
TaqI TCGA 2 cut(s) 105, 493
TasI AATT 2 cut(s) 238, 513
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 25, 89, 196
TseFI GTSAC 3 cut(s) 80, 145, 540
Tsp45I GTSAC 3 cut(s) 80, 145, 540
TspRI CASTG 3 cut(s) 25, 89, 196
XapI RAATTY 1 cut(s) 513
XceI RCATGY 2 cut(s) 104, 712
XspI CTAG 2 cut(s) 333, 545
Zsp2I ATGCAT 2 cut(s) 224, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.