Rh2BG619300

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007692
Physical Location & Seq
Forward (+)
84201599 .. 84206736
5138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG619300.1

Sequence Viewer

Length: 798 bp
ATGGAGCCTGCTGCAGTTTCACTGTTTACTTACAAGAACAAATATGACTATAAACCGAAGAAAGGGCCATTTTCACTGGAGGAGCTCGCTCACTCCAAAATTCCCCGCCAATCGGATCACAGACAACTCCGGCGGCGGCCAAAAACCGGAGTTCCACGTTCTTTCAACCCCTTAAAACAACGCTCCTTCTTCTTCTCTCCGACCCTCATCAACATTCAATCCCAGGGAGCCAGGATTGTAGATCAATGTGTATGCATAGCACGCTGGGGAAATTATGTTGATGAGGTTGATTCTTGGCACAGTCCCGCATACAACTCTGAAAACCACAGTAGCTCAACGGCTATTCACACAAGCCAGTTCGTTTCTAGCCCTGGAGAGGCAGTAACTGTTGCTCAGGAAGTTGTCAAAACATTGGTAGCCAAGGGATATGTTCTGGGACAAGATGCATTAGTCAAGGCGAAAGCTCTTGATGAGTCCTATCAAGTATCAGCTACTGCAGCAGCCAAGGTTTATGAGCTTAGCGATCGAATAGGGCTCACTGAGAGAATTCAAGAAGGCAGGGAAGTTGTTAAGTCACTAGACGAGAACTTCCATGTTTCAGATATCACCAAATCGGCTGCAACTGCTACCGGAACGGCAGTAGTGGTAGCAGCAACAGTTACTGGGAGAGCAGCCTTAGCAGCAGGAAGCGCTGTAGTGAACAGCAGCTACTTTGCCAAGGGAGCTCTTTGGGTTTCGGACATGTTGACTCGTGCAGGCAAAGCTGCAGCTGATTTGGGCAGTCATGACAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

265

Amino Acids

28.69

Weight (kDa)

9.21

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 106, 133, 136, 306
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 2 cut(s) 99, 546
AfeI AGCGCT 1 cut(s) 691
AfiI CCNNNNNNNGG 4 cut(s) 62, 112, 146, 376
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 3 cut(s) 166, 218, 551
AjnI CCWGG 3 cut(s) 222, 230, 370
AluBI AGCT 9 cut(s) 85, 333, 464, 491, 517, 708, 725, 764, 770
AluI AGCT 9 cut(s) 85, 333, 464, 491, 517, 708, 725, 764, 770
Alw21I GWGCWC 2 cut(s) 87, 727
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 3 cut(s) 386, 494, 662
Aor51HI AGCGCT 1 cut(s) 691
AoxI GGCC 2 cut(s) 65, 137
ApoI RAATTY 2 cut(s) 99, 546
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 598
BanII GRGCYC 3 cut(s) 87, 537, 727
BauI CACGAG 1 cut(s) 750
Bbv12I GWGCWC 2 cut(s) 87, 727
BbvI GCAGC 9 cut(s) 509, 512, 604, 662, 683, 692, 717, 751, 779
BceAI ACGGC 2 cut(s) 354, 651
BciT130I CCWGG 3 cut(s) 224, 232, 372
BfaI CTAG 2 cut(s) 366, 578
BfmI CTRYAG 4 cut(s) 12, 495, 693, 765
BfoI RGCGCY 1 cut(s) 693
BlpI GCTNAGC 1 cut(s) 518
Bme1390I CCNGG 3 cut(s) 224, 232, 372
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 6, 229
BmrFI CCNGG 3 cut(s) 224, 232, 372
BmrI ACTGGG 1 cut(s) 672
BmsI GCATC 1 cut(s) 433
BmuI ACTGGG 1 cut(s) 672
BpmI CTGGAG 2 cut(s) 98, 393
Bpu10I CCTNAGC 2 cut(s) 393, 676
Bpu1102I GCTNAGC 1 cut(s) 518
BsaJI CCNNGG 6 cut(s) 222, 223, 370, 420, 504, 717
BsaWI WCCGGW 2 cut(s) 146, 629
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 112, 146, 376
Bse1I ACTGG 3 cut(s) 81, 355, 667
BseBI CCWGG 3 cut(s) 224, 232, 372
BseDI CCNNGG 6 cut(s) 222, 223, 370, 420, 504, 717
BseLI CCNNNNNNNGG 4 cut(s) 62, 112, 146, 376
BseMII CTCAG 2 cut(s) 407, 531
BseNI ACTGG 3 cut(s) 81, 355, 667
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 9 cut(s) 509, 512, 604, 662, 683, 692, 717, 751, 779
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 526
BshFI GGCC 2 cut(s) 67, 139
BsiEI CGRYCG 1 cut(s) 526
BsiHKAI GWGCWC 2 cut(s) 87, 727
BsiSI CCGG 3 cut(s) 130, 147, 630
BslFI GGGAC 2 cut(s) 288, 450
BslI CCNNNNNNNGG 4 cut(s) 62, 112, 146, 376
BsmFI GGGAC 2 cut(s) 288, 450
BsnI GGCC 2 cut(s) 67, 139
Bsp1286I GDGCHC 3 cut(s) 87, 537, 727
Bsp143I GATC 3 cut(s) 115, 241, 523
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 4 cut(s) 106, 133, 136, 306
BspANI GGCC 2 cut(s) 67, 139
BspCNI CTCAG 2 cut(s) 406, 532
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 6, 229
BspMAI CTGCAG 3 cut(s) 16, 499, 769
BspPI GGATC 1 cut(s) 123
BsrI ACTGG 3 cut(s) 81, 355, 667
BssECI CCNNGG 6 cut(s) 222, 223, 370, 420, 504, 717
BssMI GATC 3 cut(s) 115, 241, 523
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 3 cut(s) 420, 504, 717
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 3 cut(s) 224, 232, 372
Bst4CI ACNGT 6 cut(s) 24, 302, 329, 388, 658, 791
BstC8I GCNNGC 4 cut(s) 9, 87, 262, 757
BstDEI CTNAG 4 cut(s) 393, 518, 540, 676
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 3 cut(s) 118, 244, 526
BstMBI GATC 3 cut(s) 115, 241, 523
BstMCI CGRYCG 1 cut(s) 526
BstMWI GCNNNNNNNGC 8 cut(s) 261, 497, 623, 677, 680, 689, 722, 761
BstNI CCWGG 3 cut(s) 224, 232, 372
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 3 cut(s) 222, 230, 370
BstSFI CTRYAG 4 cut(s) 12, 495, 693, 765
BstV1I GCAGC 9 cut(s) 509, 512, 604, 662, 683, 692, 717, 751, 779
BsuRI GGCC 2 cut(s) 67, 139
BtsIMutI CAGTG 3 cut(s) 20, 74, 537
Cac8I GCNNGC 4 cut(s) 9, 87, 262, 757
CaiI CAGNNNCTG 3 cut(s) 386, 494, 662
CciI TCATGA 1 cut(s) 784
CfoI GCGC 1 cut(s) 692
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 3 cut(s) 593, 742, 785
DdeI CTNAG 4 cut(s) 393, 518, 540, 676
DpnI GATC 3 cut(s) 117, 243, 525
DpnII GATC 3 cut(s) 115, 241, 523
EaeI YGGCCR 1 cut(s) 137
Ecl136II GAGCTC 2 cut(s) 85, 725
Eco130I CCWWGG 3 cut(s) 420, 504, 717
Eco24I GRGCYC 3 cut(s) 87, 537, 727
Eco32I GATATC 1 cut(s) 604
Eco47III AGCGCT 1 cut(s) 691
Eco53kI GAGCTC 2 cut(s) 85, 725
EcoICRI GAGCTC 2 cut(s) 85, 725
EcoRI GAATTC 1 cut(s) 546
EcoRII CCWGG 3 cut(s) 222, 230, 370
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 3 cut(s) 420, 504, 717
EcoT22I ATGCAT 2 cut(s) 257, 448
EcoT38I GRGCYC 3 cut(s) 87, 537, 727
ErhI CCWWGG 3 cut(s) 420, 504, 717
FaeI CATG 3 cut(s) 596, 745, 788
FaqI GGGAC 2 cut(s) 288, 450
FatI CATG 3 cut(s) 592, 741, 784
FauI CCCGC 2 cut(s) 113, 313
FriOI GRGCYC 3 cut(s) 87, 537, 727
FspBI CTAG 2 cut(s) 366, 578
GlaI GCGC 1 cut(s) 691
GsaI CCCAGC 1 cut(s) 268
GsuI CTGGAG 2 cut(s) 98, 393
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 2 cut(s) 67, 139
HapII CCGG 3 cut(s) 130, 147, 630
HhaI GCGC 1 cut(s) 692
Hin1II CATG 3 cut(s) 596, 745, 788
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HinfI GANTC 3 cut(s) 290, 473, 748
HpaII CCGG 3 cut(s) 130, 147, 630
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 3 cut(s) 27, 700, 747
Hpy188I TCNGA 5 cut(s) 115, 201, 319, 601, 739
Hpy188III TCNNGA 4 cut(s) 395, 467, 551, 785
Hpy8I GTNNAC 3 cut(s) 27, 700, 747
HpyAV CCTTC 2 cut(s) 196, 548
HpyCH4III ACNGT 6 cut(s) 24, 302, 329, 388, 658, 791
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 7 cut(s) 14, 255, 446, 497, 620, 755, 767
HpyF10VI GCNNNNNNNGC 8 cut(s) 261, 497, 623, 677, 680, 689, 722, 761
HpyF3I CTNAG 4 cut(s) 393, 518, 540, 676
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 3 cut(s) 596, 745, 788
HspAI GCGC 1 cut(s) 690
Kzo9I GATC 3 cut(s) 115, 241, 523
LmnI GCTCC 5 cut(s) 4, 82, 188, 227, 722
Lsp1109I GCAGC 9 cut(s) 509, 512, 604, 662, 683, 692, 717, 751, 779
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 366, 578
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 3 cut(s) 382, 573, 658
MalI GATC 3 cut(s) 117, 243, 525
MboI GATC 3 cut(s) 115, 241, 523
MboII GAAGA 3 cut(s) 70, 181, 184
MhlI GDGCHC 3 cut(s) 87, 537, 727
MluCI AATT 3 cut(s) 99, 271, 546
MlyI GAGTC 2 cut(s) 482, 742
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 73, 215, 277, 370
Mph1103I ATGCAT 2 cut(s) 257, 448
MseI TTAA 2 cut(s) 173, 570
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 3 cut(s) 130, 147, 630
MspR9I CCNGG 3 cut(s) 224, 232, 372
MvaI CCWGG 3 cut(s) 224, 232, 372
MwoI GCNNNNNNNGC 8 cut(s) 261, 497, 623, 677, 680, 689, 722, 761
NdeII GATC 3 cut(s) 115, 241, 523
NlaIII CATG 3 cut(s) 596, 745, 788
NlaIV GGNNCC 2 cut(s) 6, 229
NmuCI GTSAC 1 cut(s) 573
NsiI ATGCAT 2 cut(s) 257, 448
NspI RCATGY 1 cut(s) 745
PagI TCATGA 1 cut(s) 784
PasI CCCWGGG 1 cut(s) 223
PciI ACATGT 1 cut(s) 741
PfeI GAWTC 1 cut(s) 290
Ple19I CGATCG 1 cut(s) 526
PleI GAGTC 2 cut(s) 481, 742
PpsI GAGTC 2 cut(s) 481, 742
PscI ACATGT 1 cut(s) 741
Psp124BI GAGCTC 2 cut(s) 87, 727
Psp6I CCWGG 3 cut(s) 222, 230, 370
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 3 cut(s) 222, 230, 370
PspN4I GGNNCC 2 cut(s) 6, 229
PspPI GGNCC 1 cut(s) 65
PsrI GAACNNNNNNTAC 2 cut(s) 692, 724
PstI CTGCAG 3 cut(s) 16, 499, 769
PstNI CAGNNNCTG 3 cut(s) 386, 494, 662
PvuI CGATCG 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 770
SacI GAGCTC 2 cut(s) 87, 727
SaqAI TTAA 2 cut(s) 173, 570
Sau3AI GATC 3 cut(s) 115, 241, 523
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 2 cut(s) 482, 742
ScrFI CCNGG 3 cut(s) 224, 232, 372
SduI GDGCHC 3 cut(s) 87, 537, 727
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 4 cut(s) 12, 495, 693, 765
Sse9I AATT 3 cut(s) 99, 271, 546
SsiI CCGC 4 cut(s) 106, 133, 136, 306
SspMI CTAG 2 cut(s) 366, 578
SstI GAGCTC 2 cut(s) 87, 727
StyD4I CCNGG 3 cut(s) 222, 230, 370
StyI CCWWGG 3 cut(s) 420, 504, 717
TaaI ACNGT 6 cut(s) 24, 302, 329, 388, 658, 791
TaiI ACGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 526
TasI AATT 3 cut(s) 99, 271, 546
TauI GCSGC 2 cut(s) 136, 139
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 173, 570
Tru9I TTAA 2 cut(s) 173, 570
TscAI CASTG 3 cut(s) 27, 81, 544
TseFI GTSAC 1 cut(s) 573
Tsp45I GTSAC 1 cut(s) 573
TspRI CASTG 3 cut(s) 27, 81, 544
XapI RAATTY 2 cut(s) 99, 546
XceI RCATGY 1 cut(s) 745
XspI CTAG 2 cut(s) 366, 578
Zsp2I ATGCAT 2 cut(s) 257, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.