Prupe.3G269600_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007692
Physical Location & Seq
Forward (+)
25129961 .. 25133669
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G269600.1

Sequence Viewer

Length: 762 bp
ATGTACCCTGGTGGTTACACTGCTGAAGTTACAAGCTTATCCCCTAAAGCTACTGAGCAAGATGTTTTTGACTTTTTCAGTCATTGTGGTGCAGTTGAGCATGTTGAAGTCATCAGATCTGGTGAATATGCCTGCACTGCATATGTGACATTCAGAGATGCATTTGCTCTACAAACTGCTGTGATGCTCAGCGGAGCTAGCATTGTAGACCAATGTGTATCCATAACACGCTGGGGAAGTTATATTGATGAATCTGATCCTTGGAACAATCCATACAACCCTGAAGGCAACACTAGCTCAATGGCTTTTCACACAAGTGAGTTCGTTTCTACTCCTGGAGAAGCAATAACAGTTGCTCAGGAAGTTGTCAAAACAATGGTAGCCAAGGGATATGTTTTGGGCAAGGACGCATTAACAAAGGCCAAAGCTTTCGATGAGTCCCATCAAGTCTCAGCTACTGCAGCAGCCAAGGTTTATGAGCTAAGCAATAGAATTGGGCTCACTGAGAAAATCAATGCAGGCATGGAAGTTGTTAAATCCACAGACGAGAAGTTCCATGTTTCTGATATCACCAAATCGGCCGCAACTGTTGCTGGAACAGCAGCAGTGGTAGCAGCCACAGTTGCTGGGGAAGCAGCTGTGGCAGCAGGAAGCGCTCTAGTCAATAGCAGCTTCTTTGCCAAGGGAGCTCTGTGGGTTTCAGATGCATTGACTCGTGCAAGCAAAGCTGCAGCTGATTTGGGTTCTCATACCAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

254

Amino Acids

26.56

Weight (kDa)

5.12

Isoelectric Point (pI)

23.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AciI CCGC 2 cut(s) 192, 582
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 579
AcuI CTGAAG 2 cut(s) 45, 303
AfaI GTAC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 655
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 2 cut(s) 7, 334
AleI CACNNNNGTG 1 cut(s) 315
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 2 cut(s) 458, 626
Aor51HI AGCGCT 1 cut(s) 655
AoxI GGCC 2 cut(s) 420, 579
ApeKI GCWGC 9 cut(s) 461, 464, 602, 614, 635, 644, 669, 728, 731
AspLEI GCGC 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 134, 562
AsuNHI GCTAGC 1 cut(s) 197
BanII GRGCYC 2 cut(s) 501, 691
BauI CACGAG 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 9 cut(s) 473, 476, 614, 626, 647, 656, 681, 715, 743
BccI CCATC 1 cut(s) 450
BciT130I CCWGG 2 cut(s) 9, 336
BciVI GTATCC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 3 cut(s) 198, 294, 659
BfmI CTRYAG 2 cut(s) 459, 729
BfoI RGCGCY 1 cut(s) 657
BfuI GTATCC 1 cut(s) 229
BglII AGATCT 1 cut(s) 116
BlpI GCTNAGC 2 cut(s) 188, 482
Bme1390I CCNGG 2 cut(s) 9, 336
BmrFI CCNGG 2 cut(s) 9, 336
BmsI GCATC 3 cut(s) 148, 174, 694
BmtI GCTAGC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 2 cut(s) 188, 482
BsaJI CCNNGG 5 cut(s) 7, 260, 384, 468, 681
BseBI CCWGG 2 cut(s) 9, 336
BseDI CCNNGG 5 cut(s) 7, 260, 384, 468, 681
BseMII CTCAG 5 cut(s) 45, 202, 371, 465, 495
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 9 cut(s) 473, 476, 614, 626, 647, 656, 681, 715, 743
BseYI CCCAGC 2 cut(s) 231, 626
BsgI GTGCAG 2 cut(s) 111, 118
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 422, 581
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 691
BslFI GGGAC 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 2 cut(s) 422, 581
Bsp1286I GDGCHC 2 cut(s) 501, 691
Bsp143I GATC 2 cut(s) 116, 256
Bsp1720I GCTNAGC 2 cut(s) 188, 482
BspACI CCGC 2 cut(s) 192, 582
BspANI GGCC 2 cut(s) 422, 581
BspCNI CTCAG 5 cut(s) 46, 201, 370, 464, 496
BspMAI CTGCAG 2 cut(s) 463, 733
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 1 cut(s) 251
BssECI CCNNGG 5 cut(s) 7, 260, 384, 468, 681
BssMI GATC 2 cut(s) 116, 256
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 4 cut(s) 260, 384, 468, 681
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 9, 336
Bst4CI ACNGT 3 cut(s) 352, 589, 622
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 4 cut(s) 133, 199, 520, 721
BstDEI CTNAG 6 cut(s) 54, 188, 357, 451, 482, 504
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 2 cut(s) 119, 259
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 2 cut(s) 116, 256
BstMCI CGRYCG 1 cut(s) 582
BstNI CCWGG 2 cut(s) 9, 336
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 7, 334
BstSFI CTRYAG 2 cut(s) 459, 729
BstV1I GCAGC 9 cut(s) 473, 476, 614, 626, 647, 656, 681, 715, 743
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BstZI CGGCCG 1 cut(s) 579
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 422, 581
BtsI GCAGTG 3 cut(s) 18, 135, 612
BtsIMutI CAGTG 4 cut(s) 18, 135, 501, 612
Cac8I GCNNGC 4 cut(s) 133, 199, 520, 721
CaiI CAGNNNCTG 2 cut(s) 458, 626
CfoI GCGC 1 cut(s) 656
CseI GACGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 101, 523, 557
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 6 cut(s) 54, 188, 357, 451, 482, 504
DpnI GATC 2 cut(s) 118, 258
DpnII GATC 2 cut(s) 116, 256
EaeI YGGCCR 1 cut(s) 579
EagI CGGCCG 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 689
EclXI CGGCCG 1 cut(s) 579
Eco130I CCWWGG 4 cut(s) 260, 384, 468, 681
Eco24I GRGCYC 2 cut(s) 501, 691
Eco32I GATATC 1 cut(s) 568
Eco47III AGCGCT 1 cut(s) 655
Eco52I CGGCCG 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 45, 303
EcoICRI GAGCTC 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 7, 334
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 4 cut(s) 260, 384, 468, 681
EcoT22I ATGCAT 2 cut(s) 163, 709
EcoT38I GRGCYC 2 cut(s) 501, 691
ErhI CCWWGG 4 cut(s) 260, 384, 468, 681
FaeI CATG 3 cut(s) 104, 526, 560
FaqI GGGAC 1 cut(s) 424
FatI CATG 3 cut(s) 100, 522, 556
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 207
FriOI GRGCYC 2 cut(s) 501, 691
FspBI CTAG 3 cut(s) 198, 294, 659
GlaI GCGC 1 cut(s) 655
GsaI CCCAGC 2 cut(s) 235, 630
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 657
HaeIII GGCC 2 cut(s) 422, 581
HgaI GACGC 1 cut(s) 416
HhaI GCGC 1 cut(s) 656
Hin1II CATG 3 cut(s) 104, 526, 560
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HindIII AAGCTT 2 cut(s) 34, 426
HinfI GANTC 3 cut(s) 251, 437, 712
HphI GGTGA 2 cut(s) 134, 562
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 5 cut(s) 116, 155, 256, 565, 703
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 352, 589, 622
HpyCH4V TGCA 9 cut(s) 92, 135, 140, 161, 461, 518, 707, 719, 731
HpyF3I CTNAG 6 cut(s) 54, 188, 357, 451, 482, 504
Hsp92II CATG 3 cut(s) 104, 526, 560
HspAI GCGC 1 cut(s) 654
Kzo9I GATC 2 cut(s) 116, 256
LmnI GCTCC 2 cut(s) 194, 686
Lsp1109I GCAGC 9 cut(s) 473, 476, 614, 626, 647, 656, 681, 715, 743
LweI GCATC 3 cut(s) 148, 174, 694
MaeI CTAG 3 cut(s) 198, 294, 659
MaeIII GTNAC 3 cut(s) 14, 28, 145
MalI GATC 2 cut(s) 118, 258
MboI GATC 2 cut(s) 116, 256
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 501, 691
MluCI AATT 1 cut(s) 492
MlyI GAGTC 2 cut(s) 446, 706
Mph1103I ATGCAT 2 cut(s) 163, 709
MseI TTAA 2 cut(s) 413, 534
MslI CAYNNNNRTG 2 cut(s) 87, 315
MspA1I CMGCKG 3 cut(s) 192, 638, 734
MspR9I CCNGG 2 cut(s) 9, 336
MvaI CCWGG 2 cut(s) 9, 336
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 116, 256
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 3 cut(s) 104, 526, 560
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 2 cut(s) 163, 709
NspI RCATGY 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 315
PfeI GAWTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 334
PleI GAGTC 2 cut(s) 445, 706
PpsI GAGTC 2 cut(s) 445, 706
Psp124BI GAGCTC 1 cut(s) 691
Psp6I CCWGG 2 cut(s) 7, 334
PspFI CCCAGC 2 cut(s) 231, 626
PspGI CCWGG 2 cut(s) 7, 334
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PstI CTGCAG 2 cut(s) 463, 733
PstNI CAGNNNCTG 2 cut(s) 458, 626
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 638, 734
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 87, 315
SacI GAGCTC 1 cut(s) 691
SaqAI TTAA 2 cut(s) 413, 534
Sau3AI GATC 2 cut(s) 116, 256
SchI GAGTC 2 cut(s) 446, 706
ScrFI CCNGG 2 cut(s) 9, 336
SduI GDGCHC 2 cut(s) 501, 691
SfaNI GCATC 3 cut(s) 148, 174, 694
SfcI CTRYAG 2 cut(s) 459, 729
SmiMI CAYNNNNRTG 2 cut(s) 87, 315
Sse9I AATT 1 cut(s) 492
SsiI CCGC 2 cut(s) 192, 582
SspMI CTAG 3 cut(s) 198, 294, 659
SstI GAGCTC 1 cut(s) 691
StyD4I CCNGG 2 cut(s) 7, 334
StyI CCWWGG 4 cut(s) 260, 384, 468, 681
TaaI ACNGT 3 cut(s) 352, 589, 622
TaqI TCGA 1 cut(s) 432
TasI AATT 1 cut(s) 492
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 413, 534
Tru9I TTAA 2 cut(s) 413, 534
TscAI CASTG 4 cut(s) 25, 142, 508, 612
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 9 cut(s) 461, 464, 602, 614, 635, 644, 669, 728, 731
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 4 cut(s) 25, 142, 508, 612
XceI RCATGY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 3 cut(s) 198, 294, 659
Zsp2I ATGCAT 2 cut(s) 163, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.