Rorug02G0535500

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007692
Physical Location & Seq
Forward (+)
66421822 .. 66427333
5512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0535500.1

Sequence Viewer

Length: 2940 bp
ATGGTGATTTGGGAAGGGATGCAAATGAGAAGAGCCAGTTATGCGGTTTTCGTGATTCTGCTCTGTGCATTGGTCATTGGGGCCTCAGAGGGCGTCAGGAGAACCAAAGAAACGTTTTATGGAGGTGATTGGGTTTCGCATGAGGAGGAGATAGATGAAGATATGGCGGAGCAGGTATGGTACCATTGCAGGAAAGAATTAATAGGCGGGACAGATGGGGTGGAAGATCTTGACTTGTATATTCCACAGGAAGCAGCCAGTGACTCGGAAACAGTGTTCTTTTCAAAAAGCAACATACACGATGCGATTTTAGTTCTTCCTCCTGATGTGAAACAAACACTTGTTGATTGTTTAAGAAAGAAAGGCATTGTGTTTCATGCTCCTGGCAAAAGGGATACCGGCAACAACTGGTTGATCAACCACTTTGAGTGGCTTTTAACTTCGGATATTGCTCCTAGAAGATATTTGGCCAGTGGTTCCCCCAAGTCAAAAGCACCAGCCGCTGCTCCATCTCTAGCTCCAGGTCCTGCTTCTAAGTTGTCTAGCGGTCGAGCACCTCCACGTTCAGTTCTATCTCCAAGCCCTACAGATGAGTCAGATAACAATGAAGCACCAGCACCTTCACCTTCACCTCCTAAACAAAGTGGGAAGGGAAGTCCACCTCCCAAACCAAGTGGGAAAGTAGCTGCTTCAAGTCCACCAGCAAAACCTGCCAAAACAAAAAGTCCACCAGCAAAACCAGCCAAAACAAATGGTCCACCATCAAAGGATGGCAGTATGAGTATGATCAGAATAATTGGTATTGCTGTTGCTGCAGTAGTGATAATTTTGCTTGTTGTACTGCCGATCTGCTGCTGCTGTCTAAAGAAAAGAAGAAGGAGAAGAAAAGTTAATCCGAGAAGTGTACCAAAGGATGACAGGCCTCTTCTCTATATATCTTCTTCTGGTTCTTCACAAATATCCAATAGTTTAGGTTCAAGTACCAGAGAGTTCAACGCTGGTGGAAAGTTGGGAAATTTGCCTATGAAAAATGAAAAAGGAAATGATTCTTCTGAGGCAAAGTCAGAAGGTACAGCAGGACCACCAAACCCTCCTGTACCACCTCCTCCAGGAAAAGCAGCTCCTCCGCCTCCTGGACCACCACCACCGCCTCCTCTTCGTCCTCGCCCGCCACCAGTACCTCCCAAAAATGCACCTAAACCAATGGCTGGTAAGACCCAAATTCCACCTAAAGGACATCTCAAAGCAAACAGTGGCGATAATGCTGATGCTGGAAGTGAATCTGGAAAGACCAAGTTAAAACCATTCTTCTGGGATAAGGTTAATGCCAACCCTGATCAATCGATGGTCTGGCATGAGCTCAAAGAAGGATCATTCCAGTTCAATGAGGAGAAGATAGAGTCTCTATTTGGTTATACAAAGAGCCAAAATGAGCGCAAAAAGGTTTCACCATCGGAACCTGCAATCCAGTTTATCCAAATTATTGACAAAAAGAAAGCACAAAATCTATCAATTCTTCTGCGAGCATTGAATGTGACAACAGAAGAAGTTGCTGAGGCCCTCCGAGAAGGCAACGAGCTTCCTGTGGAGCTCCTCCAAACCCTGTTGAAGATGGCACCAACTTCAGAAGAGGAACTGAAGCTTAGGTTATACACAGGTGATCTTGCTCTACTAGGCCCTGCAGAGCGGTTCCTCAAAGTCATGGTTGAGATACCATTTGCTTTTAAGCGGATGGAGGCACTGCTCTTCATGTGTTCCTTCAATGAGGAGGTCTCTAACACTAAAGAATCCTTTGCAACTTTAGAGGTTGCTTGCAGCAAGCTCAGGAAGAGCAGGCTATTCCTAAAACTTTTGGAAGCCGTACTAAAAACTGGCAACCGGATGAATGACGGTACCTACCGTGGTGGTGCACAAGCATTTAGGCTTGATACGCTCTTGAAACTGGCTGATGTAAAAGGAACTGATGGCAAGACCACACTCTTGCACTTTGTCGTTCAAGAGATCATCCGTTATGAGGGCATGAAAGCTGCCCGCAGAGCCAGAGAATCAAGCCGGAGCATGACCAACTCCAGTATGAGTACAGAGGAGTTTGTTGAAGAGGTTGGTGAGGAATCAGCAGAGCACTATCGTAACCTTGGTCTTCAGGTTGTCTCAGGTTTAAGCGATGAACTTCAAGATGTGAAAAAGGCAGCAGTTGTAGATGCCGATAGCTTAACTGCAACAGTTTCAAATATTGGCACAAATCTAATAAAAGCTCGAGACTTTGTAAACACCGACTTGAAGAATAATCTGGATGAAGACAGCGAGTTCCATCGTGCACTAGCCAGTTTTCTGGAGCGTGCAGAAGGAGAAACTACATTTCTTCTAGAAGAAGAAAAGAGGATAACGACTCTTGTGAAGAGCACGGCAGATTACTTTCATGGGAACTCAATGAAGGATGAAGGCATTCGTTTGTTTGCCATTGTACGTGATTTCTTGGTAATACTAAATAAGGTATGTGCTGAGATTAGAATGCAAGCAATGAAGCAAGCGAAGACGAATTCCAGGAAAGAGGCTCTCACACAAGCAAGTCCCAAGAAGGAGGCTCTCACACAAGCAAATTCAGAAAAGCAGTCAGAAATGAATAAGGTACCCACAGAAGCTAGTTCAGAAAAGAAAGAGAAGGTTCCCACTGAAGCAAGTTCAGAAAAGAAAGAGAAGACTCCCACTGAAGCAAGTTCAGAAAAGAAAGAGAAGGCTCCCACAGAAGCAAGTTCAGAAATGAAAGAGAAGGCTCCTACTGAAGCAAGTTCAGAAAAGAAAGAGAAGGCTCCCACAGAAGCAAGTTCAGAAAAACCGCCAGAAATTCAACAGCAACATTCAGATATTCGTCGGCGACTCTTTCCAGCAATTGCAGAACTGCGAATAGAGGACGATTTCAGTTCAGATGATGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

979

Amino Acids

107.24

Weight (kDa)

8.46

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FH2 PF02181 429 - 827 3.6e-102 Formin Homology 2 Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 163, 718, 1468
Acc65I GGTACC 3 cut(s) 180, 1892, 2629
AccB1I GGYRCC 4 cut(s) 180, 1615, 1892, 2629
AccB7I CCANNNNNTGG 1 cut(s) 1208
AccBSI CCGCTC 1 cut(s) 1687
AclI AACGTT 1 cut(s) 113
AclWI GGATC 1 cut(s) 1378
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 5 cut(s) 1015, 1221, 2539, 2599, 2844
AcuI CTGAAG 6 cut(s) 1608, 1658, 2126, 2694, 2730, 2802
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 5 cut(s) 1109, 1133, 1208, 1232, 2014
AjnI CCWGG 5 cut(s) 382, 520, 1108, 1132, 2543
AloI GAACNNNNNNTCC 4 cut(s) 260, 292, 1449, 1481
Alw21I GWGCWC 7 cut(s) 556, 1362, 1593, 1912, 2124, 2320, 2405
Alw26I GTCTC 5 cut(s) 1407, 1777, 2155, 2253, 2927
Alw44I GTGCAC 2 cut(s) 1908, 2316
AlwI GGATC 1 cut(s) 1378
AlwNI CAGNNNCTG 2 cut(s) 503, 527
Ama87I CYCGRG 1 cut(s) 2256
AoxI GGCC 5 cut(s) 81, 468, 920, 1557, 1675
ApaLI GTGCAC 2 cut(s) 1908, 2316
ApoI RAATTY 5 cut(s) 1015, 1221, 2539, 2599, 2844
AseI ATTAAT 1 cut(s) 200
Asp700I GAANNNNTTC 2 cut(s) 1045, 2445
Asp718I GGTACC 3 cut(s) 180, 1892, 2629
AspLEI GCGC 1 cut(s) 1437
AspS9I GGNCC 7 cut(s) 81, 524, 755, 1079, 1136, 1558, 1676
AsuHPI GGTGA 7 cut(s) 16, 137, 615, 621, 1440, 1670, 2117
AvaI CYCGRG 1 cut(s) 2256
AvaII GGWCC 4 cut(s) 524, 755, 1079, 1136
BaeGI GKGCMC 2 cut(s) 1912, 2320
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 4 cut(s) 180, 1615, 1892, 2629
BanII GRGCYC 2 cut(s) 1362, 1593
BbsI GAAGAC 4 cut(s) 2132, 2304, 2540, 2705
Bbv12I GWGCWC 7 cut(s) 556, 1362, 1593, 1912, 2124, 2320, 2405
BbvCI CCTCAGC 1 cut(s) 1554
BceAI ACGGC 2 cut(s) 1844, 2421
BciT130I CCWGG 5 cut(s) 384, 522, 1110, 1134, 2545
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 3 cut(s) 414, 786, 1336
BcoDI GTCTC 5 cut(s) 1407, 1777, 2155, 2253, 2927
BfaI CTAG 7 cut(s) 456, 515, 543, 1673, 2321, 2366, 2643
BfmI CTRYAG 3 cut(s) 585, 813, 1680
BfuAI ACCTGC 3 cut(s) 163, 718, 1468
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 1 cut(s) 226
Bme1390I CCNGG 5 cut(s) 384, 522, 1110, 1134, 2545
Bme18I GGWCC 4 cut(s) 524, 755, 1079, 1136
BmeT110I CYCGRG 1 cut(s) 2256
BmgT120I GGNCC 7 cut(s) 81, 524, 755, 1079, 1136, 1558, 1676
BmrFI CCNGG 5 cut(s) 384, 522, 1110, 1134, 2545
BmsI GCATC 4 cut(s) 9, 292, 1258, 2191
BpiI GAAGAC 4 cut(s) 2132, 2304, 2540, 2705
BplI GAGNNNNNCTC 2 cut(s) 1757, 1789
BpmI CTGGAG 4 cut(s) 504, 1092, 2053, 2354
Bpu10I CCTNAGC 3 cut(s) 1554, 1643, 1823
Bsa29I ATCGAT 1 cut(s) 1343
BsaAI YACGTR 1 cut(s) 2468
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 1777
BsaJI CCNNGG 2 cut(s) 1900, 2134
BsaWI WCCGGW 1 cut(s) 1878
Bsc4I CCNNNNNNNGG 5 cut(s) 1109, 1133, 1208, 1232, 2014
Bse118I RCCGGY 1 cut(s) 398
Bse3DI GCAATG 2 cut(s) 184, 2526
BseBI CCWGG 5 cut(s) 384, 522, 1110, 1134, 2545
BseCI ATCGAT 1 cut(s) 1343
BseDI CCNNGG 2 cut(s) 1900, 2134
BseGI GGATG 8 cut(s) 24, 775, 919, 1737, 1887, 2004, 2299, 2443
BseLI CCNNNNNNNGG 5 cut(s) 1109, 1133, 1208, 1232, 2014
BseMI GCAATG 2 cut(s) 184, 2526
BseMII CTCAG 6 cut(s) 99, 1044, 1545, 1837, 2166, 2493
BseRI GAGGAG 9 cut(s) 158, 161, 1095, 1113, 1143, 1403, 1583, 1781, 2099
BseSI GKGCMC 2 cut(s) 1912, 2320
BsgI GTGCAG 1 cut(s) 2361
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 5 cut(s) 83, 470, 922, 1559, 1677
BshNI GGYRCC 4 cut(s) 180, 1615, 1892, 2629
BshVI ATCGAT 1 cut(s) 1343
BsiEI CGRYCG 1 cut(s) 550
BsiHKAI GWGCWC 7 cut(s) 556, 1362, 1593, 1912, 2124, 2320, 2405
BsiHKCI CYCGRG 1 cut(s) 2256
BsiSI CCGG 3 cut(s) 399, 1879, 2053
BslFI GGGAC 2 cut(s) 223, 2556
BslI CCNNNNNNNGG 5 cut(s) 1109, 1133, 1208, 1232, 2014
BsmAI GTCTC 5 cut(s) 1407, 1777, 2155, 2253, 2927
BsmFI GGGAC 2 cut(s) 223, 2556
BsmI GAATGC 2 cut(s) 2445, 2517
BsnI GGCC 5 cut(s) 83, 470, 922, 1559, 1677
Bso31I GGTCTC 1 cut(s) 1777
BsoBI CYCGRG 1 cut(s) 2256
Bsp1286I GDGCHC 7 cut(s) 556, 1362, 1593, 1912, 2124, 2320, 2405
Bsp143I GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
BspANI GGCC 5 cut(s) 83, 470, 922, 1559, 1677
BspCNI CTCAG 6 cut(s) 98, 1045, 1546, 1836, 2165, 2494
BspDI ATCGAT 1 cut(s) 1343
BspMAI CTGCAG 2 cut(s) 817, 1684
BspMI ACCTGC 3 cut(s) 163, 718, 1468
BspPI GGATC 1 cut(s) 1378
BspQI GCTCTTC 4 cut(s) 25, 1751, 1823, 2393
BspT107I GGYRCC 4 cut(s) 180, 1615, 1892, 2629
BspTNI GGTCTC 1 cut(s) 1777
BsrBI CCGCTC 1 cut(s) 1687
BsrDI GCAATG 2 cut(s) 184, 2526
BsrFI RCCGGY 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 1900, 2134
BssMI GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 2134
Bst2UI CCWGG 5 cut(s) 384, 522, 1110, 1134, 2545
Bst4CI ACNGT 5 cut(s) 274, 1253, 1892, 1901, 2224
Bst6I CTCTTC 8 cut(s) 25, 930, 1161, 1623, 1751, 1823, 2091, 2393
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 2468
BstC8I GCNNGC 9 cut(s) 1169, 1524, 1813, 1820, 1835, 2032, 2340, 2517, 2529
BstDEI CTNAG 8 cut(s) 85, 534, 1053, 1554, 1643, 1823, 2152, 2502
BstDSI CCRYGG 1 cut(s) 1900
BstENI CCTNNNNNAGG 1 cut(s) 1107
BstF5I GGATG 8 cut(s) 24, 775, 919, 1737, 1887, 2004, 2299, 2443
BstHHI GCGC 1 cut(s) 1437
BstKTI GATC 8 cut(s) 229, 417, 789, 849, 1339, 1373, 1663, 2004
BstMAI GTCTC 5 cut(s) 1407, 1777, 2155, 2253, 2927
BstMBI GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 7 cut(s) 41, 500, 710, 740, 812, 1930, 2036
BstNI CCWGG 5 cut(s) 384, 522, 1110, 1134, 2545
BstSCI CCNGG 5 cut(s) 382, 520, 1108, 1132, 2543
BstSFI CTRYAG 3 cut(s) 585, 813, 1680
BstSLI GKGCMC 2 cut(s) 1912, 2320
BstV2I GAAGAC 4 cut(s) 2132, 2304, 2540, 2705
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 2 cut(s) 1311, 2332
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 1343
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 5 cut(s) 83, 470, 922, 1559, 1677
BsuTUI ATCGAT 1 cut(s) 1343
BtgI CCRYGG 1 cut(s) 1900
BtgZI GCGATG 1 cut(s) 2178
BtsCI GGATG 8 cut(s) 24, 775, 919, 1737, 1887, 2004, 2299, 2443
BtsI GCAGTG 1 cut(s) 1739
BtsIMutI CAGTG 7 cut(s) 265, 279, 478, 1258, 1739, 2670, 2706
BveI ACCTGC 3 cut(s) 163, 718, 1468
Cac8I GCNNGC 9 cut(s) 1169, 1524, 1813, 1820, 1835, 2032, 2340, 2517, 2529
CaiI CAGNNNCTG 2 cut(s) 503, 527
CfoI GCGC 1 cut(s) 1437
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 7 cut(s) 81, 524, 755, 1079, 1136, 1558, 1676
ClaI ATCGAT 1 cut(s) 1343
CseI GACGC 1 cut(s) 82
CspCI CAANNNNNGTGG 4 cut(s) 655, 690, 982, 1017
CviAII CATG 8 cut(s) 140, 377, 1355, 1702, 1750, 2020, 2059, 2420
DdeI CTNAG 8 cut(s) 85, 534, 1053, 1554, 1643, 1823, 2152, 2502
DpnI GATC 8 cut(s) 228, 416, 788, 848, 1338, 1372, 1662, 2003
DpnII GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 8 cut(s) 25, 930, 1161, 1623, 1751, 1823, 2091, 2393
EarI CTCTTC 8 cut(s) 25, 930, 1161, 1623, 1751, 1823, 2091, 2393
EciI GGCGGA 2 cut(s) 182, 1116
Ecl136II GAGCTC 2 cut(s) 1360, 1591
Eco130I CCWWGG 1 cut(s) 2134
Eco147I AGGCCT 1 cut(s) 922
Eco24I GRGCYC 2 cut(s) 1362, 1593
Eco31I GGTCTC 1 cut(s) 1777
Eco47I GGWCC 4 cut(s) 524, 755, 1079, 1136
Eco53kI GAGCTC 2 cut(s) 1360, 1591
Eco57I CTGAAG 6 cut(s) 1608, 1658, 2126, 2694, 2730, 2802
Eco88I CYCGRG 1 cut(s) 2256
EcoICRI GAGCTC 2 cut(s) 1360, 1591
EcoNI CCTNNNNNAGG 1 cut(s) 1107
EcoO109I RGGNCCY 4 cut(s) 81, 524, 1558, 1676
EcoRI GAATTC 1 cut(s) 2539
EcoRII CCWGG 5 cut(s) 382, 520, 1108, 1132, 2543
EcoT14I CCWWGG 1 cut(s) 2134
EcoT38I GRGCYC 2 cut(s) 1362, 1593
ErhI CCWWGG 1 cut(s) 2134
FaeI CATG 8 cut(s) 143, 380, 1358, 1705, 1753, 2023, 2062, 2423
FaqI GGGAC 2 cut(s) 223, 2556
FatI CATG 8 cut(s) 139, 376, 1354, 1701, 1749, 2019, 2058, 2419
FauI CCCGC 3 cut(s) 200, 1176, 2039
FbaI TGATCA 3 cut(s) 414, 786, 1336
FokI GGATG 8 cut(s) 31, 782, 926, 1744, 1894, 1991, 2306, 2450
FriOI GRGCYC 2 cut(s) 1362, 1593
FspBI CTAG 7 cut(s) 456, 515, 543, 1673, 2321, 2366, 2643
GlaI GCGC 1 cut(s) 1436
GsuI CTGGAG 4 cut(s) 504, 1092, 2053, 2354
HaeIII GGCC 5 cut(s) 83, 470, 922, 1559, 1677
HapII CCGG 3 cut(s) 399, 1879, 2053
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 1437
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 8 cut(s) 143, 380, 1358, 1705, 1753, 2023, 2062, 2423
Hin6I GCGC 1 cut(s) 1435
HinP1I GCGC 1 cut(s) 1435
HindIII AAGCTT 1 cut(s) 1640
HpaII CCGG 3 cut(s) 399, 1879, 2053
HphI GGTGA 7 cut(s) 16, 137, 615, 621, 1440, 1670, 2117
Hpy166II GTNNAC 8 cut(s) 659, 698, 728, 758, 905, 1910, 2269, 2318
Hpy8I GTNNAC 8 cut(s) 659, 698, 728, 758, 905, 1910, 2269, 2318
Hpy99I CGWCG 1 cut(s) 2874
HpyCH4III ACNGT 5 cut(s) 274, 1253, 1892, 1901, 2224
HpyCH4IV ACGT 3 cut(s) 113, 562, 2467
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 500, 710, 740, 812, 1930, 2036
HpyF3I CTNAG 8 cut(s) 85, 534, 1053, 1554, 1643, 1823, 2152, 2502
HpySE526I ACGT 3 cut(s) 113, 562, 2467
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 8 cut(s) 143, 380, 1358, 1705, 1753, 2023, 2062, 2423
HspAI GCGC 1 cut(s) 1435
KpnI GGTACC 3 cut(s) 184, 1896, 2633
Ksp22I TGATCA 3 cut(s) 414, 786, 1336
Kzo9I GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
LguI GCTCTTC 4 cut(s) 25, 1751, 1823, 2393
LweI GCATC 4 cut(s) 9, 292, 1258, 2191
MaeI CTAG 7 cut(s) 456, 515, 543, 1673, 2321, 2366, 2643
MaeII ACGT 3 cut(s) 113, 562, 2467
MaeIII GTNAC 3 cut(s) 260, 1534, 2129
MalI GATC 8 cut(s) 228, 416, 788, 848, 1338, 1372, 1662, 2003
MbiI CCGCTC 1 cut(s) 1687
MboI GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
MfeI CAATTG 1 cut(s) 2889
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 7 cut(s) 556, 1362, 1593, 1912, 2124, 2320, 2405
MlsI TGGCCA 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 6 cut(s) 257, 602, 1409, 2383, 2695, 2871
Mox20I TGGCCA 1 cut(s) 470
MroXI GAANNNNTTC 2 cut(s) 1045, 2445
MscI TGGCCA 1 cut(s) 470
MseI TTAA 9 cut(s) 200, 353, 437, 891, 1298, 1323, 1725, 2159, 2213
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 3 cut(s) 399, 1879, 2053
MspR9I CCNGG 5 cut(s) 384, 522, 1110, 1134, 2545
MunI CAATTG 1 cut(s) 2889
Mva1269I GAATGC 2 cut(s) 2445, 2517
MvaI CCWGG 5 cut(s) 384, 522, 1110, 1134, 2545
MwoI GCNNNNNNNGC 7 cut(s) 41, 500, 710, 740, 812, 1930, 2036
NdeII GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
NlaIII CATG 8 cut(s) 143, 380, 1358, 1705, 1753, 2023, 2062, 2423
NmuCI GTSAC 2 cut(s) 260, 1534
PaeR7I CTCGAG 1 cut(s) 2256
PceI AGGCCT 1 cut(s) 922
PciSI GCTCTTC 4 cut(s) 25, 1751, 1823, 2393
PctI GAATGC 2 cut(s) 2445, 2517
PdmI GAANNNNTTC 2 cut(s) 1045, 2445
PfeI GAWTC 6 cut(s) 55, 1046, 1280, 1787, 2045, 2111
PflMI CCANNNNNTGG 1 cut(s) 1208
PfoI TCCNGGA 3 cut(s) 1108, 1132, 2543
PleI GAGTC 6 cut(s) 257, 601, 1408, 2383, 2695, 2871
PpsI GAGTC 6 cut(s) 257, 601, 1408, 2383, 2695, 2871
Ppu21I YACGTR 1 cut(s) 2468
PpuMI RGGWCCY 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 200
Psp124BI GAGCTC 2 cut(s) 1362, 1593
Psp1406I AACGTT 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 5 cut(s) 382, 520, 1108, 1132, 2543
PspGI CCWGG 5 cut(s) 382, 520, 1108, 1132, 2543
PspPI GGNCC 7 cut(s) 81, 524, 755, 1079, 1136, 1558, 1676
PspPPI RGGWCCY 1 cut(s) 524
PstI CTGCAG 2 cut(s) 817, 1684
PstNI CAGNNNCTG 2 cut(s) 503, 527
PsuI RGATCY 1 cut(s) 226
SacI GAGCTC 2 cut(s) 1362, 1593
SapI GCTCTTC 4 cut(s) 25, 1751, 1823, 2393
SaqAI TTAA 9 cut(s) 200, 353, 437, 891, 1298, 1323, 1725, 2159, 2213
Sau3AI GATC 8 cut(s) 226, 414, 786, 846, 1336, 1370, 1660, 2001
Sau96I GGNCC 7 cut(s) 81, 524, 755, 1079, 1136, 1558, 1676
SchI GAGTC 6 cut(s) 257, 602, 1409, 2383, 2695, 2871
ScrFI CCNGG 5 cut(s) 384, 522, 1110, 1134, 2545
SduI GDGCHC 7 cut(s) 556, 1362, 1593, 1912, 2124, 2320, 2405
SfaNI GCATC 4 cut(s) 9, 292, 1258, 2191
SfcI CTRYAG 3 cut(s) 585, 813, 1680
Sfr274I CTCGAG 1 cut(s) 2256
SinI GGWCC 4 cut(s) 524, 755, 1079, 1136
SlaI CTCGAG 1 cut(s) 2256
SmlI CTYRAG 1 cut(s) 2256
SmoI CTYRAG 1 cut(s) 2256
SseBI AGGCCT 1 cut(s) 922
SspI AATATT 1 cut(s) 2233
SspMI CTAG 7 cut(s) 456, 515, 543, 1673, 2321, 2366, 2643
SstI GAGCTC 2 cut(s) 1362, 1593
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 5 cut(s) 382, 520, 1108, 1132, 2543
StyI CCWWGG 1 cut(s) 2134
TaaI ACNGT 5 cut(s) 274, 1253, 1892, 1901, 2224
TaiI ACGT 3 cut(s) 116, 565, 2470
TaqI TCGA 3 cut(s) 550, 1343, 2257
TatI WGTACW 2 cut(s) 838, 2078
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 6 cut(s) 55, 1046, 1280, 1787, 2045, 2111
Tru1I TTAA 9 cut(s) 200, 353, 437, 891, 1298, 1323, 1725, 2159, 2213
Tru9I TTAA 9 cut(s) 200, 353, 437, 891, 1298, 1323, 1725, 2159, 2213
TscAI CASTG 7 cut(s) 265, 279, 478, 1258, 1746, 2677, 2713
TseFI GTSAC 2 cut(s) 260, 1534
Tsp45I GTSAC 2 cut(s) 260, 1534
TspGWI ACGGA 1 cut(s) 1997
TspRI CASTG 7 cut(s) 265, 279, 478, 1258, 1746, 2677, 2713
Van91I CCANNNNNTGG 1 cut(s) 1208
VneI GTGCAC 2 cut(s) 1908, 2316
VpaK11BI GGWCC 4 cut(s) 524, 755, 1079, 1136
VspI ATTAAT 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 1107
XapI RAATTY 5 cut(s) 1015, 1221, 2539, 2599, 2844
XbaI TCTAGA 1 cut(s) 2365
XhoI CTCGAG 1 cut(s) 2256
XmnI GAANNNNTTC 2 cut(s) 1045, 2445
XspI CTAG 7 cut(s) 456, 515, 543, 1673, 2321, 2366, 2643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.