MD17G1049200.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0007692
Physical Location & Seq
Reverse (-)
3592507 .. 3595166
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1049200.v1.1.491

Sequence Viewer

Length: 750 bp
ATGTACCCGGGTGGATACACCGCTGAAGTTACAAGCTTGTCCTCTAAAGCTACAGAAGAGGATGTTTACGATTTTTTCAGTCACTGCGGTGCAGTTGAGCATGTTGAAATCATCAGATCTGGTGAATATGCCAGTACCGCATATGTGACATTCAAAGATGCTTTTGCTCTGCAGACTGCTATACTACTCAGTGGAGCTAGGATTGTAGATCAATGTGTATGCATAACAAGGTGGGGAAGTTATACTGATGAATCCGATGCTTGGAACAGTCCTTACAACCCCGAAGGCAATACTAGCTTAACGACTTATCACACGAGTCAGTTCATCTCTACTCCTGGAGAAGCAGTAACTGTTGTCAAAACAATGGCAGCCAAGGGATATGTTTTGGGAAAAGACGCATTAACCAAGGCCAAAGCTTTCGACGAGTCCCATCAACTCTCAGCAACTGCAGCAGCCAAGGTTTGCGAGCTCAGCAACAGAATCGGCCTCACTGAAAAAATTTACGCAGGCATGGAAGTTGTTAAAACCGTGGACGAGAAGTTCCATGTTTCAGATATCACCAAATCAGCTGCAACCGTTACTGGAACGGCAGCTGTGGTGGCTGCTACGTATACTGGGCAAGCAGCTGTGGCAGCAGGAAGCGCTGTGGTCAACAGCAGCTACTTTGCCAAAGGAGCTCTTTGGTTTTCAGATGTATTGACTCGTGCAAGCAAAGCTGCAGCCAATTTGGGTACCCATGGCGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

250

Amino Acids

26.27

Weight (kDa)

5.68

Isoelectric Point (pI)

21.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 68 9.1e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 731
AccI GTMKAC 1 cut(s) 611
AciI CCGC 4 cut(s) 21, 87, 138, 741
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 3 cut(s) 5, 136, 733
AfeI AGCGCT 1 cut(s) 643
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 2 cut(s) 107, 154
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 87
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
Alw21I GWGCWC 2 cut(s) 471, 679
AlwNI CAGNNNCTG 3 cut(s) 84, 350, 446
Ama87I CYCGRG 1 cut(s) 7
Aor51HI AGCGCT 1 cut(s) 643
AoxI GGCC 2 cut(s) 408, 484
ApoI RAATTY 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 731
AspLEI GCGC 1 cut(s) 644
AsuC2I CCSGG 2 cut(s) 8, 9
AsuHPI GGTGA 2 cut(s) 134, 550
AvaI CYCGRG 1 cut(s) 7
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 2 cut(s) 471, 679
BauI CACGAG 2 cut(s) 313, 702
Bbv12I GWGCWC 2 cut(s) 471, 679
BccI CCATC 1 cut(s) 438
BceAI ACGGC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BciT130I CCWGG 1 cut(s) 336
BciVI GTATCC 1 cut(s) 8
BcnI CCSGG 2 cut(s) 8, 9
BfaI CTAG 2 cut(s) 198, 294
BfmI CTRYAG 4 cut(s) 51, 170, 447, 717
BfoI RGCGCY 1 cut(s) 645
BfuI GTATCC 1 cut(s) 8
BglII AGATCT 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 8, 9, 336
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 733
BmrFI CCNGG 3 cut(s) 8, 9, 336
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 148, 247
BmuI ACTGGG 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 8, 9
BsaAI YACGTR 1 cut(s) 609
BsaJI CCNNGG 6 cut(s) 7, 372, 405, 456, 528, 736
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 3 cut(s) 132, 586, 619
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 6 cut(s) 7, 372, 405, 456, 528, 736
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 3 cut(s) 202, 453, 484
BseNI ACTGG 3 cut(s) 132, 586, 619
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 2 cut(s) 410, 486
BshNI GGYRCC 1 cut(s) 731
BsiHKAI GWGCWC 2 cut(s) 471, 679
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 2 cut(s) 410, 486
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 471, 679
Bsp143I GATC 2 cut(s) 116, 208
Bsp1720I GCTNAGC 1 cut(s) 470
Bsp19I CCATGG 1 cut(s) 736
BspACI CCGC 4 cut(s) 21, 87, 138, 741
BspANI GGCC 2 cut(s) 410, 486
BspCNI CTCAG 3 cut(s) 201, 452, 483
BspLI GGNNCC 1 cut(s) 733
BspMAI CTGCAG 3 cut(s) 174, 451, 721
BspT107I GGYRCC 1 cut(s) 731
BsrI ACTGG 3 cut(s) 132, 586, 619
BssECI CCNNGG 6 cut(s) 7, 372, 405, 456, 528, 736
BssMI GATC 2 cut(s) 116, 208
BssNAI GTATAC 1 cut(s) 612
BssSI CACGAG 2 cut(s) 313, 702
BssT1I CCWWGG 4 cut(s) 372, 405, 456, 736
Bst1107I GTATAC 1 cut(s) 612
Bst2BI CACGAG 2 cut(s) 313, 702
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 4 cut(s) 269, 352, 529, 577
Bst6I CTCTTC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 609
BstC8I GCNNGC 4 cut(s) 467, 508, 621, 709
BstDEI CTNAG 3 cut(s) 188, 439, 470
BstDSI CCRYGG 2 cut(s) 528, 736
BstF5I GGATG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 2 cut(s) 119, 211
BstMBI GATC 2 cut(s) 116, 208
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 6, 7, 334
BstSFI CTRYAG 4 cut(s) 51, 170, 447, 717
BstSNI TACGTA 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BstZ17I GTATAC 1 cut(s) 612
BsuI GTATCC 1 cut(s) 8
BsuRI GGCC 2 cut(s) 410, 486
BtgI CCRYGG 2 cut(s) 528, 736
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 3 cut(s) 82, 196, 489
Cac8I GCNNGC 4 cut(s) 467, 508, 621, 709
CaiI CAGNNNCTG 3 cut(s) 84, 350, 446
CfoI GCGC 1 cut(s) 644
Cfr9I CCCGGG 1 cut(s) 7
CseI GACGC 1 cut(s) 404
Csp6I GTAC 3 cut(s) 4, 135, 732
CviAII CATG 4 cut(s) 101, 511, 545, 737
CviQI GTAC 3 cut(s) 4, 135, 732
DdeI CTNAG 3 cut(s) 188, 439, 470
DpnI GATC 2 cut(s) 118, 210
DpnII GATC 2 cut(s) 116, 208
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 2 cut(s) 469, 677
Eco105I TACGTA 1 cut(s) 609
Eco130I CCWWGG 4 cut(s) 372, 405, 456, 736
Eco24I GRGCYC 2 cut(s) 471, 679
Eco32I GATATC 1 cut(s) 556
Eco47III AGCGCT 1 cut(s) 643
Eco53kI GAGCTC 2 cut(s) 469, 677
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 2 cut(s) 469, 677
EcoRII CCWGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 4 cut(s) 372, 405, 456, 736
EcoT22I ATGCAT 1 cut(s) 224
EcoT38I GRGCYC 2 cut(s) 471, 679
ErhI CCWWGG 4 cut(s) 372, 405, 456, 736
FaeI CATG 4 cut(s) 104, 514, 548, 740
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 412
FatI CATG 4 cut(s) 100, 510, 544, 736
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 611
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 471, 679
FspBI CTAG 2 cut(s) 198, 294
GlaI GCGC 1 cut(s) 643
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 2 cut(s) 410, 486
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 404
HhaI GCGC 1 cut(s) 644
Hin1II CATG 4 cut(s) 104, 514, 548, 740
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 2 cut(s) 34, 414
HinfI GANTC 5 cut(s) 251, 316, 425, 480, 700
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 134, 550
Hpy166II GTNNAC 4 cut(s) 67, 532, 612, 652
Hpy188I TCNGA 4 cut(s) 116, 256, 553, 691
Hpy8I GTNNAC 4 cut(s) 67, 532, 612, 652
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 4 cut(s) 269, 352, 529, 577
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 7 cut(s) 92, 172, 222, 449, 572, 707, 719
HpyF3I CTNAG 3 cut(s) 188, 439, 470
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 4 cut(s) 104, 514, 548, 740
HspAI GCGC 1 cut(s) 642
KpnI GGTACC 1 cut(s) 735
Kzo9I GATC 2 cut(s) 116, 208
LmnI GCTCC 2 cut(s) 194, 674
LpnPI CCDG 9 cut(s) 21, 105, 145, 321, 348, 492, 567, 600, 621
LweI GCATC 2 cut(s) 148, 247
MaeI CTAG 2 cut(s) 198, 294
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 5 cut(s) 28, 80, 145, 346, 577
MalI GATC 2 cut(s) 118, 210
MboI GATC 2 cut(s) 116, 208
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 471, 679
MluCI AATT 2 cut(s) 498, 724
MlyI GAGTC 3 cut(s) 325, 434, 694
MnlI CCTC 3 cut(s) 52, 52, 497
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 3 cut(s) 299, 401, 522
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 4 cut(s) 23, 569, 593, 626
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 8, 9, 336
MvaI CCWGG 1 cut(s) 336
NciI CCSGG 2 cut(s) 8, 9
NcoI CCATGG 1 cut(s) 736
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 116, 208
NlaIII CATG 4 cut(s) 104, 514, 548, 740
NlaIV GGNNCC 1 cut(s) 733
NmuCI GTSAC 2 cut(s) 80, 145
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 87
PfeI GAWTC 2 cut(s) 251, 480
PfoI TCCNGGA 1 cut(s) 334
PleI GAGTC 3 cut(s) 324, 433, 694
PpsI GAGTC 3 cut(s) 324, 433, 694
Ppu21I YACGTR 1 cut(s) 609
Psp124BI GAGCTC 2 cut(s) 471, 679
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 733
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PstI CTGCAG 3 cut(s) 174, 451, 721
PstNI CAGNNNCTG 3 cut(s) 84, 350, 446
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 3 cut(s) 569, 593, 626
RsaI GTAC 3 cut(s) 5, 136, 733
RsaNI GTAC 3 cut(s) 4, 135, 732
RseI CAYNNNNRTG 1 cut(s) 87
SacI GAGCTC 2 cut(s) 471, 679
SaqAI TTAA 3 cut(s) 299, 401, 522
Sau3AI GATC 2 cut(s) 116, 208
SchI GAGTC 3 cut(s) 325, 434, 694
ScrFI CCNGG 3 cut(s) 8, 9, 336
SduI GDGCHC 2 cut(s) 471, 679
SfaNI GCATC 2 cut(s) 148, 247
SfcI CTRYAG 4 cut(s) 51, 170, 447, 717
SmaI CCCGGG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 87
SnaBI TACGTA 1 cut(s) 609
Sse9I AATT 2 cut(s) 498, 724
SsiI CCGC 4 cut(s) 21, 87, 138, 741
SspMI CTAG 2 cut(s) 198, 294
SstI GAGCTC 2 cut(s) 471, 679
StyD4I CCNGG 3 cut(s) 6, 7, 334
StyI CCWWGG 4 cut(s) 372, 405, 456, 736
TaaI ACNGT 4 cut(s) 269, 352, 529, 577
TaiI ACGT 1 cut(s) 611
TaqI TCGA 1 cut(s) 420
TasI AATT 2 cut(s) 498, 724
TfiI GAWTC 2 cut(s) 251, 480
Tru1I TTAA 3 cut(s) 299, 401, 522
Tru9I TTAA 3 cut(s) 299, 401, 522
TscAI CASTG 3 cut(s) 89, 196, 496
TseFI GTSAC 2 cut(s) 80, 145
Tsp45I GTSAC 2 cut(s) 80, 145
TspDTI ATGAA 2 cut(s) 264, 313
TspMI CCCGGG 1 cut(s) 7
TspRI CASTG 3 cut(s) 89, 196, 496
XapI RAATTY 1 cut(s) 498
XceI RCATGY 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 611
XspI CTAG 2 cut(s) 198, 294
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.