RLG00000021809

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007692
Physical Location & Seq
Forward (+)
78470840 .. 78477535
6696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021809

Sequence Viewer

Length: 906 bp
ATGACTATTGCATCTTTCGGCCCACCTGAAATTATTGGATTCCCCGCCAATCGGATCACAGACAACTCCGGCGGCGGCCCAAAACCGGAGTTCCACGTTCTTTCAACCCCATTAAAACCACGCTCCTTCTTCTTCTCTCCGACCCTCATCAACATTCAATCCCAGTTTTCCCAGGTTCAATCAGTTGAGCTTGTAAGAGGGTTTGAGGAAAATGTACCCTGTCACTGTGGTGCAGTTGAGCATGTTGAAATCATGAGATCTGGCGAATATACCTGTGCTGCATATGTGACATTCAGAGATGCTTATGCTCTTGAAACTGCTATTTTACTCAGTGGAGCCAGGATTGTAGATCAATGTGTATGCATAGCACGCTGGGGAAATTATGTTGATGAGGTTGATTCTTGGCACAGTCCCGCATGCAACTCTGAAAACCACAGTAGCTCAACGGCTATTCACACAAGCCAGTTTGTTTCTAGCCCTGGAGAGGCAGTAACTGTTGCTCAGGAAGTTGTCAAAACATTGGTAGCCAAGGGATATGTTCTGGGACAAGATGCATTAGTCAAGGCGAAAGCTCTTGATGAGTCCTATCAAGTATCAGCTACTGCAGCAGCCAAGGTTTATGAGCTTAGCAATCGAATAGGGCTCACCGAGAGAATTCAAGAAGGCAGGGAAGTTGTTAAGTCACTAGACGAGAACTTCCATGTTTCAGATATCACCAAATCGGCTGCAACTGCTACCGGAACGGCAGTAGTGGTAGCAGCAACAGTTACTGGGAGAGCAGCCTTAGCAGCAGGAAGCGCTGTAGTGAACAGCAGCTACTTTGCCAAGGGAGCTCTTTGGGTTTCGGACATGTTGACGCGTGCAGGCAAAGCTGCAGCTGATTTGGGCAGTCATGACAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

302

Amino Acids

31.98

Weight (kDa)

5.63

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 859
AciI CCGC 4 cut(s) 45, 72, 75, 414
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 654
AfaI GTAC 1 cut(s) 216
AfeI AGCGCT 1 cut(s) 799
AfiI CCNNNNNNNGG 3 cut(s) 51, 85, 484
AflIII ACRYGT 2 cut(s) 849, 857
AgsI TTSAA 6 cut(s) 105, 158, 179, 248, 314, 659
AjnI CCWGG 3 cut(s) 171, 338, 478
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 9 cut(s) 190, 441, 572, 599, 625, 816, 833, 872, 878
AluI AGCT 9 cut(s) 190, 441, 572, 599, 625, 816, 833, 872, 878
Alw21I GWGCWC 1 cut(s) 835
AlwI GGATC 1 cut(s) 62
AlwNI CAGNNNCTG 3 cut(s) 494, 602, 770
Aor51HI AGCGCT 1 cut(s) 799
AoxI GGCC 2 cut(s) 19, 76
ApoI RAATTY 1 cut(s) 654
AspLEI GCGC 1 cut(s) 800
AspS9I GGNCC 2 cut(s) 20, 77
AsuHPI GGTGA 2 cut(s) 637, 706
BanII GRGCYC 2 cut(s) 645, 835
Bbv12I GWGCWC 1 cut(s) 835
BceAI ACGGC 2 cut(s) 462, 759
BciT130I CCWGG 3 cut(s) 173, 340, 480
BfaI CTAG 2 cut(s) 474, 686
BfmI CTRYAG 3 cut(s) 603, 801, 873
BfoI RGCGCY 1 cut(s) 801
BglII AGATCT 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 626
Bme1390I CCNGG 3 cut(s) 173, 340, 480
BmgT120I GGNCC 2 cut(s) 20, 77
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 3 cut(s) 173, 340, 480
BmrI ACTGGG 2 cut(s) 157, 780
BmsI GCATC 3 cut(s) 20, 289, 541
BmuI ACTGGG 2 cut(s) 157, 780
BpmI CTGGAG 1 cut(s) 501
Bpu10I CCTNAGC 2 cut(s) 501, 784
Bpu1102I GCTNAGC 1 cut(s) 626
BsaJI CCNNGG 5 cut(s) 171, 478, 528, 612, 825
BsaWI WCCGGW 2 cut(s) 85, 737
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 85, 484
Bse1I ACTGG 3 cut(s) 163, 463, 775
BseBI CCWGG 3 cut(s) 173, 340, 480
BseDI CCNNGG 5 cut(s) 171, 478, 528, 612, 825
BseLI CCNNNNNNNGG 3 cut(s) 51, 85, 484
BseMII CTCAG 2 cut(s) 343, 515
BseNI ACTGG 3 cut(s) 163, 463, 775
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 2 cut(s) 252, 882
Bsh1236I CGCG 1 cut(s) 859
BshFI GGCC 2 cut(s) 21, 78
BsiHKAI GWGCWC 1 cut(s) 835
BsiSI CCGG 3 cut(s) 69, 86, 738
BslFI GGGAC 2 cut(s) 396, 558
BslI CCNNNNNNNGG 3 cut(s) 51, 85, 484
BsmFI GGGAC 2 cut(s) 396, 558
BsnI GGCC 2 cut(s) 21, 78
Bsp1286I GDGCHC 2 cut(s) 645, 835
Bsp143I GATC 3 cut(s) 54, 257, 349
Bsp1720I GCTNAGC 1 cut(s) 626
BspACI CCGC 4 cut(s) 45, 72, 75, 414
BspANI GGCC 2 cut(s) 21, 78
BspCNI CTCAG 2 cut(s) 342, 514
BspFNI CGCG 1 cut(s) 859
BspHI TCATGA 2 cut(s) 252, 892
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 2 cut(s) 607, 877
BspPI GGATC 1 cut(s) 62
BsrI ACTGG 3 cut(s) 163, 463, 775
BssECI CCNNGG 5 cut(s) 171, 478, 528, 612, 825
BssMI GATC 3 cut(s) 54, 257, 349
BssT1I CCWWGG 3 cut(s) 528, 612, 825
Bst2UI CCWGG 3 cut(s) 173, 340, 480
Bst4CI ACNGT 6 cut(s) 227, 410, 437, 496, 766, 899
BstC8I GCNNGC 4 cut(s) 370, 418, 861, 865
BstDEI CTNAG 4 cut(s) 329, 501, 626, 784
BstFNI CGCG 1 cut(s) 859
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 1 cut(s) 800
BstKTI GATC 3 cut(s) 57, 260, 352
BstMBI GATC 3 cut(s) 54, 257, 349
BstMWI GCNNNNNNNGC 8 cut(s) 369, 605, 731, 785, 788, 797, 830, 869
BstNI CCWGG 3 cut(s) 173, 340, 480
BstNSI RCATGY 3 cut(s) 245, 420, 853
BstSCI CCNGG 3 cut(s) 171, 338, 478
BstSFI CTRYAG 3 cut(s) 603, 801, 873
BstUI CGCG 1 cut(s) 859
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 2 cut(s) 21, 78
BtsIMutI CAGTG 2 cut(s) 223, 337
Cac8I GCNNGC 4 cut(s) 370, 418, 861, 865
CaiI CAGNNNCTG 3 cut(s) 494, 602, 770
CciI TCATGA 2 cut(s) 252, 892
CfoI GCGC 1 cut(s) 800
Cfr13I GGNCC 2 cut(s) 20, 77
CseI GACGC 1 cut(s) 865
Csp6I GTAC 1 cut(s) 215
CviAII CATG 6 cut(s) 242, 253, 417, 701, 850, 893
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 4 cut(s) 329, 501, 626, 784
DpnI GATC 3 cut(s) 56, 259, 351
DpnII GATC 3 cut(s) 54, 257, 349
Ecl136II GAGCTC 1 cut(s) 833
Eco130I CCWWGG 3 cut(s) 528, 612, 825
Eco24I GRGCYC 2 cut(s) 645, 835
Eco32I GATATC 1 cut(s) 712
Eco47III AGCGCT 1 cut(s) 799
Eco53kI GAGCTC 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 654
EcoRII CCWGG 3 cut(s) 171, 338, 478
EcoRV GATATC 1 cut(s) 712
EcoT14I CCWWGG 3 cut(s) 528, 612, 825
EcoT22I ATGCAT 2 cut(s) 365, 556
EcoT38I GRGCYC 2 cut(s) 645, 835
ErhI CCWWGG 3 cut(s) 528, 612, 825
FaeI CATG 6 cut(s) 245, 256, 420, 704, 853, 896
FaqI GGGAC 2 cut(s) 396, 558
FatI CATG 6 cut(s) 241, 252, 416, 700, 849, 892
FauI CCCGC 2 cut(s) 52, 421
FauNDI CATATG 1 cut(s) 283
FriOI GRGCYC 2 cut(s) 645, 835
FspBI CTAG 2 cut(s) 474, 686
GlaI GCGC 1 cut(s) 799
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 2 cut(s) 21, 78
HapII CCGG 3 cut(s) 69, 86, 738
HgaI GACGC 1 cut(s) 865
HhaI GCGC 1 cut(s) 800
Hin1II CATG 6 cut(s) 245, 256, 420, 704, 853, 896
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HinfI GANTC 3 cut(s) 39, 398, 581
HpaII CCGG 3 cut(s) 69, 86, 738
HphI GGTGA 2 cut(s) 637, 706
Hpy166II GTNNAC 2 cut(s) 808, 855
Hpy188I TCNGA 6 cut(s) 54, 141, 296, 427, 709, 847
Hpy188III TCNNGA 6 cut(s) 253, 311, 503, 575, 659, 893
Hpy8I GTNNAC 2 cut(s) 808, 855
HpyAV CCTTC 2 cut(s) 136, 656
HpyCH4III ACNGT 6 cut(s) 227, 410, 437, 496, 766, 899
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 8 cut(s) 369, 605, 731, 785, 788, 797, 830, 869
HpyF3I CTNAG 4 cut(s) 329, 501, 626, 784
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 6 cut(s) 245, 256, 420, 704, 853, 896
HspAI GCGC 1 cut(s) 798
Kzo9I GATC 3 cut(s) 54, 257, 349
LmnI GCTCC 3 cut(s) 128, 335, 830
LweI GCATC 3 cut(s) 20, 289, 541
MaeI CTAG 2 cut(s) 474, 686
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 5 cut(s) 221, 286, 490, 681, 766
MalI GATC 3 cut(s) 56, 259, 351
MboI GATC 3 cut(s) 54, 257, 349
MboII GAAGA 2 cut(s) 121, 124
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 645, 835
MluCI AATT 3 cut(s) 30, 379, 654
MluI ACGCGT 1 cut(s) 857
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 5 cut(s) 155, 191, 199, 385, 478
Mph1103I ATGCAT 2 cut(s) 365, 556
MseI TTAA 2 cut(s) 113, 678
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 3 cut(s) 69, 86, 738
MspR9I CCNGG 3 cut(s) 173, 340, 480
MvaI CCWGG 3 cut(s) 173, 340, 480
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 8 cut(s) 369, 605, 731, 785, 788, 797, 830, 869
NdeI CATATG 1 cut(s) 283
NdeII GATC 3 cut(s) 54, 257, 349
NlaIII CATG 6 cut(s) 245, 256, 420, 704, 853, 896
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 3 cut(s) 221, 286, 681
NsiI ATGCAT 2 cut(s) 365, 556
NspI RCATGY 3 cut(s) 245, 420, 853
OliI CACNNNNGTG 1 cut(s) 228
PaeI GCATGC 1 cut(s) 420
PagI TCATGA 2 cut(s) 252, 892
PciI ACATGT 1 cut(s) 849
PfeI GAWTC 2 cut(s) 39, 398
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PscI ACATGT 1 cut(s) 849
Psp124BI GAGCTC 1 cut(s) 835
Psp6I CCWGG 3 cut(s) 171, 338, 478
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 3 cut(s) 171, 338, 478
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 20, 77
PsrI GAACNNNNNNTAC 2 cut(s) 800, 832
PstI CTGCAG 2 cut(s) 607, 877
PstNI CAGNNNCTG 3 cut(s) 494, 602, 770
PsuI RGATCY 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 835
SaqAI TTAA 2 cut(s) 113, 678
Sau3AI GATC 3 cut(s) 54, 257, 349
Sau96I GGNCC 2 cut(s) 20, 77
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 3 cut(s) 173, 340, 480
SduI GDGCHC 2 cut(s) 645, 835
SfaNI GCATC 3 cut(s) 20, 289, 541
SfcI CTRYAG 3 cut(s) 603, 801, 873
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 420
Sse9I AATT 3 cut(s) 30, 379, 654
SsiI CCGC 4 cut(s) 45, 72, 75, 414
SspMI CTAG 2 cut(s) 474, 686
SstI GAGCTC 1 cut(s) 835
StyD4I CCNGG 3 cut(s) 171, 338, 478
StyI CCWWGG 3 cut(s) 528, 612, 825
TaaI ACNGT 6 cut(s) 227, 410, 437, 496, 766, 899
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 634
TasI AATT 3 cut(s) 30, 379, 654
TauI GCSGC 2 cut(s) 75, 78
TfiI GAWTC 2 cut(s) 39, 398
Tru1I TTAA 2 cut(s) 113, 678
Tru9I TTAA 2 cut(s) 113, 678
TscAI CASTG 2 cut(s) 230, 337
TseFI GTSAC 3 cut(s) 221, 286, 681
Tsp45I GTSAC 3 cut(s) 221, 286, 681
TspRI CASTG 2 cut(s) 230, 337
XapI RAATTY 1 cut(s) 654
XceI RCATGY 3 cut(s) 245, 420, 853
XspI CTAG 2 cut(s) 474, 686
Zsp2I ATGCAT 2 cut(s) 365, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.