pycom111g04020

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0007692
Physical Location & Seq
Reverse (-)
2421943 .. 2423123
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04020.2

Sequence Viewer

Length: 681 bp
ATGAATGTGTTATCTGATTGGGAGAATGCTTTTGTTATTGATAACAGATCTGGCGAATATGCCTCTACTGCATATGTGACATTCAGAGATGCTTTTGCTCTGCAAACTGCGATATTACTCAGCGGAGCTAGGATCGTAGATCAATGTGTATGCATAACAAGTTGGGGAAGTTATATCGATAAATCCGATGCTTGGAACAGTTCTACTTACCCCGAAGGCAATACTAGCTCAACGACTTATCACTCGAGTCAGTTCATCTCTACCCCTGGAGAAGCAGTAACGGTAGTCAAAACACTGGCATCTAAGGGATATGTTTTGGGAAAAGACGCATTAGTCAAGGCCAAAGCTTTCGACGAGTCCCATCAACTCTCAGCAACTGCAGCAGCCAAGGTTTGTGAGCTCAGCGACAGAATCGGCCTCACTGAAAAAATTTACGCAGGCAGGGAAGTTGTTAAAACCGTGGACGAGAAGTTCCATGTTTCAGATATCACCAAATCAGCTGCAACTGTTACTGGAACGGCGGTGGTGGTGGCAGCTACGTATACTGGGGAAGCAGCTGTGGCAGCAGGAAGCGCTGTGGTCAACAGCAGCTACTTTGCCAAAGGAGCTCTTTGGTTTTCAGATGTATTGACTCGTGCAAGCAAAGCTGCAGCTGATTTGGGTAGTCATGGCGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

227

Amino Acids

23.79

Weight (kDa)

5.8

Isoelectric Point (pI)

14.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 542
AciI CCGC 3 cut(s) 123, 521, 672
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 429
AfeI AGCGCT 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 192
AjnI CCWGG 1 cut(s) 265
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
Alw21I GWGCWC 2 cut(s) 402, 610
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 244
Aor51HI AGCGCT 1 cut(s) 574
AoxI GGCC 2 cut(s) 339, 415
ApeKI GCWGC 9 cut(s) 380, 383, 500, 533, 554, 563, 588, 647, 650
ApoI RAATTY 1 cut(s) 429
AspLEI GCGC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 244
BanII GRGCYC 2 cut(s) 402, 610
BauI CACGAG 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 402, 610
BbvI GCAGC 9 cut(s) 392, 395, 487, 545, 566, 575, 600, 634, 662
BccI CCATC 1 cut(s) 369
BceAI ACGGC 1 cut(s) 534
BciT130I CCWGG 1 cut(s) 267
BfaI CTAG 2 cut(s) 129, 225
BfmI CTRYAG 2 cut(s) 378, 648
BfoI RGCGCY 1 cut(s) 576
BglII AGATCT 1 cut(s) 47
BisI GCNGC 9 cut(s) 381, 384, 501, 534, 555, 564, 589, 648, 651
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 9 cut(s) 382, 385, 502, 535, 556, 565, 590, 649, 652
Bme1390I CCNGG 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 3 cut(s) 79, 178, 308
BmuI ACTGGG 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 265, 387, 459
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 3 cut(s) 300, 517, 550
BseBI CCWGG 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 265, 387, 459
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 3 cut(s) 133, 384, 415
BseNI ACTGG 3 cut(s) 300, 517, 550
BseXI GCAGC 9 cut(s) 392, 395, 487, 545, 566, 575, 600, 634, 662
BshFI GGCC 2 cut(s) 341, 417
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 402, 610
BsiHKCI CYCGRG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 2 cut(s) 341, 417
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 402, 610
Bsp143I GATC 3 cut(s) 47, 132, 139
Bsp1720I GCTNAGC 1 cut(s) 401
BspACI CCGC 3 cut(s) 123, 521, 672
BspANI GGCC 2 cut(s) 341, 417
BspCNI CTCAG 3 cut(s) 132, 383, 414
BspDI ATCGAT 1 cut(s) 177
BspMAI CTGCAG 2 cut(s) 382, 652
BspPI GGATC 1 cut(s) 140
BsrI ACTGG 3 cut(s) 300, 517, 550
BssECI CCNNGG 3 cut(s) 265, 387, 459
BssMI GATC 3 cut(s) 47, 132, 139
BssNAI GTATAC 1 cut(s) 543
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 543
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 4 cut(s) 200, 283, 460, 508
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 439, 640
BstDEI CTNAG 4 cut(s) 119, 303, 370, 401
BstDSI CCRYGG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 3 cut(s) 50, 135, 142
BstMBI GATC 3 cut(s) 47, 132, 139
BstMWI GCNNNNNNNGC 8 cut(s) 68, 225, 380, 560, 563, 572, 605, 644
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 2 cut(s) 378, 648
BstSNI TACGTA 1 cut(s) 540
BstV1I GCAGC 9 cut(s) 392, 395, 487, 545, 566, 575, 600, 634, 662
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BstZ17I GTATAC 1 cut(s) 543
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 2 cut(s) 341, 417
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 293, 420
Cac8I GCNNGC 2 cut(s) 439, 640
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 575
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 335
CviAII CATG 2 cut(s) 476, 668
DdeI CTNAG 4 cut(s) 119, 303, 370, 401
DpnI GATC 3 cut(s) 49, 134, 141
DpnII GATC 3 cut(s) 47, 132, 139
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Ecl136II GAGCTC 2 cut(s) 400, 608
Eco105I TACGTA 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 2 cut(s) 402, 610
Eco32I GATATC 1 cut(s) 487
Eco47III AGCGCT 1 cut(s) 574
Eco53kI GAGCTC 2 cut(s) 400, 608
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 2 cut(s) 400, 608
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 155
EcoT38I GRGCYC 2 cut(s) 402, 610
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 2 cut(s) 479, 671
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 1 cut(s) 343
FatI CATG 2 cut(s) 475, 667
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 9 cut(s) 381, 384, 501, 534, 555, 564, 589, 648, 651
FriOI GRGCYC 2 cut(s) 402, 610
Fsp4HI GCNGC 9 cut(s) 381, 384, 501, 534, 555, 564, 589, 648, 651
FspBI CTAG 2 cut(s) 129, 225
GlaI GCGC 1 cut(s) 574
GluI GCNGC 9 cut(s) 381, 384, 501, 534, 555, 564, 589, 648, 651
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 2 cut(s) 341, 417
HgaI GACGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 575
Hin1II CATG 2 cut(s) 479, 671
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 4 cut(s) 247, 356, 411, 631
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 3 cut(s) 463, 543, 583
Hpy188I TCNGA 5 cut(s) 16, 86, 187, 484, 622
Hpy8I GTNNAC 3 cut(s) 463, 543, 583
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 4 cut(s) 200, 283, 460, 508
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 7 cut(s) 71, 103, 153, 380, 503, 638, 650
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 225, 380, 560, 563, 572, 605, 644
HpyF3I CTNAG 4 cut(s) 119, 303, 370, 401
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 2 cut(s) 479, 671
HspAI GCGC 1 cut(s) 573
Kzo9I GATC 3 cut(s) 47, 132, 139
LmnI GCTCC 2 cut(s) 125, 605
LpnPI CCDG 9 cut(s) 36, 252, 279, 281, 423, 427, 498, 531, 552
Lsp1109I GCAGC 9 cut(s) 392, 395, 487, 545, 566, 575, 600, 634, 662
LweI GCATC 3 cut(s) 79, 178, 308
MaeI CTAG 2 cut(s) 129, 225
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 3 cut(s) 76, 277, 508
MalI GATC 3 cut(s) 49, 134, 141
MboI GATC 3 cut(s) 47, 132, 139
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 402, 610
MluCI AATT 1 cut(s) 429
MlyI GAGTC 3 cut(s) 256, 365, 625
MnlI CCTC 2 cut(s) 73, 428
Mph1103I ATGCAT 1 cut(s) 155
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 4 cut(s) 123, 500, 557, 653
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 8 cut(s) 68, 225, 380, 560, 563, 572, 605, 644
NdeI CATATG 1 cut(s) 73
NdeII GATC 3 cut(s) 47, 132, 139
NlaIII CATG 2 cut(s) 479, 671
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 411
PkrI GCNGC 9 cut(s) 382, 385, 502, 535, 556, 565, 590, 649, 652
PleI GAGTC 3 cut(s) 255, 364, 625
PpsI GAGTC 3 cut(s) 255, 364, 625
Ppu21I YACGTR 1 cut(s) 540
Psp124BI GAGCTC 2 cut(s) 402, 610
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 244
PstI CTGCAG 2 cut(s) 382, 652
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 3 cut(s) 500, 557, 653
SacI GAGCTC 2 cut(s) 402, 610
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 9 cut(s) 381, 384, 501, 534, 555, 564, 589, 648, 651
Sau3AI GATC 3 cut(s) 47, 132, 139
SchI GAGTC 3 cut(s) 256, 365, 625
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 2 cut(s) 402, 610
SfaNI GCATC 3 cut(s) 79, 178, 308
SfcI CTRYAG 2 cut(s) 378, 648
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SnaBI TACGTA 1 cut(s) 540
Sse9I AATT 1 cut(s) 429
SsiI CCGC 3 cut(s) 123, 521, 672
SspMI CTAG 2 cut(s) 129, 225
SstI GAGCTC 2 cut(s) 402, 610
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 4 cut(s) 200, 283, 460, 508
TaiI ACGT 1 cut(s) 542
TaqI TCGA 3 cut(s) 177, 245, 351
TasI AATT 1 cut(s) 429
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 300, 427
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 9 cut(s) 380, 383, 500, 533, 554, 563, 588, 647, 650
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 17, 244
TspRI CASTG 2 cut(s) 300, 427
XapI RAATTY 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 542
XspI CTAG 2 cut(s) 129, 225
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.