FvH4_6g48980

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007692
Physical Location & Seq
Forward (+)
36780742 .. 36784390
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48980.t2

Sequence Viewer

Length: 765 bp
ATGTACCCTGGTGGTTACAGTGTTGAAGTTACGAGCTTATCCCCTAAAGCCACAGAGAAGGATGTTTACGATTTCTTCAGTCACTGTGGTGCAGTTGAGCATGTTGAAATCATGAGGTCTGGTGAATATGCTTGTGCTGCATATGTGACATTCAGAGACGCTTATGCTCTTGAAACTGCTGTATTGCTCAGTGGATCCAGAATTGTAGATCAATGTGTCTGCATTGCACGCTGGGGTAACTATGTTGATGAAATTGATCCTTGGAACGGTCCTGCATTCAACTCTGAAAACCACAGTAGCTCAACGGCCTTTCACACAAGCCAGTTCATTTCAAGCCCTGGAGAGGCTGTAACTGTTGCTCAGGAAGTTGTCAAAACAATGGTAGCCAAGGGATATGTTCTGGGACAAGATGCATTAATCAAGGCAAAAGCTCTTGATGAGTCCTATCAAGTATCGGCTACTGCAGCAGCCAAAGTTTATGAGCTTAGCGATCGAATTGGGCTCACTGAGAGAATTCATGCAGGCAGGGAAGTTGTCAAGTCCCTAGACGAGAACTTCCATGTTTCAGAGATCACCAAAACAGCTGCAACTGCTACCGGAACAGCAGTAGTGGTAGCAGCAACAGTTACTGGGAGAGCAGCCTTAGCAGCAGGAAGCGCTGTAGTGAACAGCAGCTACTTTGCCAAGGGATCTCTTTGGGTTTCGGACATATTGACTCGTGCAGGCAAAGCTGCAGCTGATTTGGGCAGTCATGACAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

255

Amino Acids

26.93

Weight (kDa)

5.36

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 70 3.7e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 189, 202, 251, 697
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 658
AfiI CCNNNNNNNGG 2 cut(s) 266, 343
AgsI TTSAA 5 cut(s) 26, 107, 173, 280, 333
AjnI CCWGG 2 cut(s) 7, 337
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 8 cut(s) 36, 300, 431, 484, 584, 675, 731, 737
AluI AGCT 8 cut(s) 36, 300, 431, 484, 584, 675, 731, 737
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 4 cut(s) 189, 202, 251, 697
AlwNI CAGNNNCTG 2 cut(s) 84, 629
Aor51HI AGCGCT 1 cut(s) 658
AoxI GGCC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 513
AseI ATTAAT 1 cut(s) 416
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 134, 565
AvaII GGWCC 1 cut(s) 269
BamHI GGATCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BauI CACGAG 1 cut(s) 717
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 2 cut(s) 9, 339
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 3 cut(s) 462, 660, 732
BfoI RGCGCY 1 cut(s) 660
BlpI GCTNAGC 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 9, 339
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 9, 339
BmrI ACTGGG 1 cut(s) 639
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 2 cut(s) 360, 643
Bpu1102I GCTNAGC 1 cut(s) 485
BsaJI CCNNGG 5 cut(s) 7, 260, 337, 387, 684
BsaWI WCCGGW 1 cut(s) 596
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 343
Bse1I ACTGG 2 cut(s) 322, 634
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 9, 339
BseDI CCNNGG 5 cut(s) 7, 260, 337, 387, 684
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 266, 343
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 202, 374, 498
BseNI ACTGG 2 cut(s) 322, 634
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 2 cut(s) 111, 741
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 493
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 2 cut(s) 417, 526
BslI CCNNNNNNNGG 2 cut(s) 266, 343
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 417, 526
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 6 cut(s) 194, 208, 256, 490, 570, 689
Bsp1720I GCTNAGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 3 cut(s) 201, 373, 499
BspHI TCATGA 2 cut(s) 111, 751
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 2 cut(s) 466, 736
BspPI GGATC 4 cut(s) 189, 202, 251, 697
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 322, 634
BssECI CCNNGG 5 cut(s) 7, 260, 337, 387, 684
BssMI GATC 6 cut(s) 194, 208, 256, 490, 570, 689
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 3 cut(s) 260, 387, 684
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 2 cut(s) 9, 339
Bst4CI ACNGT 7 cut(s) 20, 86, 269, 296, 355, 625, 758
BstC8I GCNNGC 3 cut(s) 229, 523, 724
BstDEI CTNAG 5 cut(s) 188, 360, 485, 507, 643
BstF5I GGATG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 6 cut(s) 197, 211, 259, 493, 573, 692
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 6 cut(s) 194, 208, 256, 490, 570, 689
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 8 cut(s) 137, 228, 464, 590, 644, 647, 656, 728
BstNI CCWGG 2 cut(s) 9, 339
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 7, 337
BstSFI CTRYAG 3 cut(s) 462, 660, 732
BstX2I RGATCY 2 cut(s) 194, 689
BstYI RGATCY 2 cut(s) 194, 689
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 4 cut(s) 25, 82, 196, 504
Cac8I GCNNGC 3 cut(s) 229, 523, 724
CaiI CAGNNNCTG 2 cut(s) 84, 629
CciI TCATGA 2 cut(s) 111, 751
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 4
CviAII CATG 5 cut(s) 101, 112, 518, 560, 752
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 5 cut(s) 188, 360, 485, 507, 643
DpnI GATC 6 cut(s) 196, 210, 258, 492, 572, 691
DpnII GATC 6 cut(s) 194, 208, 256, 490, 570, 689
Eco130I CCWWGG 3 cut(s) 260, 387, 684
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 269
Eco47III AGCGCT 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 7, 337
EcoT14I CCWWGG 3 cut(s) 260, 387, 684
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 3 cut(s) 260, 387, 684
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 5 cut(s) 104, 115, 521, 563, 755
FaqI GGGAC 2 cut(s) 417, 526
FatI CATG 5 cut(s) 100, 111, 517, 559, 751
FauNDI CATATG 1 cut(s) 142
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 504
FspBI CTAG 1 cut(s) 545
GlaI GCGC 1 cut(s) 658
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 597
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 659
Hin1II CATG 5 cut(s) 104, 115, 521, 563, 755
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HinfI GANTC 2 cut(s) 440, 715
HpaII CCGG 1 cut(s) 597
HphI GGTGA 2 cut(s) 134, 565
Hpy166II GTNNAC 2 cut(s) 67, 667
Hpy188I TCNGA 4 cut(s) 155, 286, 568, 706
Hpy188III TCNNGA 6 cut(s) 112, 170, 198, 362, 434, 752
Hpy8I GTNNAC 2 cut(s) 67, 667
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 7 cut(s) 20, 86, 269, 296, 355, 625, 758
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 228, 464, 590, 644, 647, 656, 728
HpyF3I CTNAG 5 cut(s) 188, 360, 485, 507, 643
Hsp92II CATG 5 cut(s) 104, 115, 521, 563, 755
HspAI GCGC 1 cut(s) 657
Kzo9I GATC 6 cut(s) 194, 208, 256, 490, 570, 689
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 7 cut(s) 14, 28, 80, 145, 236, 349, 625
MalI GATC 6 cut(s) 196, 210, 258, 492, 572, 691
MboI GATC 6 cut(s) 194, 208, 256, 490, 570, 689
MboII GAAGA 1 cut(s) 67
MflI RGATCY 2 cut(s) 194, 689
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 4 cut(s) 201, 252, 495, 513
MlyI GAGTC 2 cut(s) 449, 709
MnlI CCTC 2 cut(s) 108, 337
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 2 cut(s) 584, 737
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 9, 339
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 2 cut(s) 9, 339
MwoI GCNNNNNNNGC 8 cut(s) 137, 228, 464, 590, 644, 647, 656, 728
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 194, 208, 256, 490, 570, 689
NlaIII CATG 5 cut(s) 104, 115, 521, 563, 755
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 80, 145
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 87
PagI TCATGA 2 cut(s) 111, 751
PctI GAATGC 1 cut(s) 275
Ple19I CGATCG 1 cut(s) 493
PleI GAGTC 2 cut(s) 448, 709
PpsI GAGTC 2 cut(s) 448, 709
PshBI ATTAAT 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 7, 337
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 2 cut(s) 7, 337
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 269
PsrI GAACNNNNNNTAC 2 cut(s) 659, 691
PstI CTGCAG 2 cut(s) 466, 736
PstNI CAGNNNCTG 2 cut(s) 84, 629
PsuI RGATCY 2 cut(s) 194, 689
PvuI CGATCG 1 cut(s) 493
PvuII CAGCTG 2 cut(s) 584, 737
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 1 cut(s) 416
Sau3AI GATC 6 cut(s) 194, 208, 256, 490, 570, 689
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 2 cut(s) 449, 709
ScrFI CCNGG 2 cut(s) 9, 339
SduI GDGCHC 1 cut(s) 504
SetI ASST 9 cut(s) 38, 119, 302, 433, 486, 586, 677, 733, 739
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 3 cut(s) 462, 660, 732
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 4 cut(s) 201, 252, 495, 513
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 7, 337
StyI CCWWGG 3 cut(s) 260, 387, 684
TaaI ACNGT 7 cut(s) 20, 86, 269, 296, 355, 625, 758
TaqI TCGA 1 cut(s) 493
TasI AATT 4 cut(s) 201, 252, 495, 513
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 4 cut(s) 25, 89, 196, 511
TseFI GTSAC 2 cut(s) 80, 145
Tsp45I GTSAC 2 cut(s) 80, 145
TspDTI ATGAA 3 cut(s) 264, 316, 506
TspRI CASTG 4 cut(s) 25, 89, 196, 511
VpaK11BI GGWCC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 416
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 104
XspI CTAG 1 cut(s) 545
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.