Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0007692

Physical Location & Seq

Genomic Coordinates Forward (+)

36808 .. 39255

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgtaccctggtggttacactgctgaagttacgagcttatccgctaaagctactgagaaggatgttttcgatttcttcagtcactgtggtgcagttgagcatgttgaaatcatgagatctggcgaatatacctgtgctgcatatgtgacattcagagatgcttatgctcttgaaactgctattttgctcagtggagccaggattgtagatcaatgtgtatgcatagcacgctggggaaattatgttgatgaggttgattcttggcacagtcccgcatacaactctgaaaaccacagtagctcaacggctattcacacaagccagttcgtttctagccctggagaggcagtaactgttgctcaggaagttgtcaaaacattggtagccaagggatatgttctgggacaagatgcattagtcaaggcgaaagctcttgatgagtcctatcaagtatcagctactgcagcagccaaggtttatgagcttagcgatcgaatagggctcactgagagaattcaagaaggcagggaagttgttaagtcactagacgagaacttccatgtttcagatatcaccaaatcggctgcaactgctaccggaacggcagtagtggtagcagcaacagttactgggagagcagccttagcagcaggaagcgctgtagtgaacagcagctactttgccaagggagctctttgggtttcggacatgttgactcgtgcaggcaaagctgcagctgatttgggcagtcatgacagtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

254

Amino Acids

26.89

Weight (kDa)

5.24

Isoelectric Point (pI)

22.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01210 AT3G01210
fragaria_vesca	FvH4_6g48980 FvH4_6g48980
malus_domestica	MD09G1049200.v1.1 MD17G1049200.v1.1
prunus_persica	Prupe.3G269600_v2.0.a1 Prupe.3G269600_v2.0.a1 Prupe.3G269600_v2.0.a1 Prupe.3G269600_v2.0.a1
pyrus_communis	pycom111g04020 pycom17g04420
rosa_chinensis	RchiOBHm_Chr2g0168821
rosa_laevigata	RLG00000021809
rosa_multiflora	Rmu_ssc0000393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082650
rosa_rugosa	Rorug02G0535500 Rorug02G0535500 Rorug02G0535500
rosa_samantha	Rh2AG606500 Rh2BG619300 Rh2CG587900 Rh2DG629900
rosa_wichuraiana	Rw2G050270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 273
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	2 cut(s)	45, 61
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	107, 173, 518
AjnI	CCWGG	3 cut(s)	7, 197, 337
AleI	CACNNNNGTG	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	694
AlwNI	CAGNNNCTG	4 cut(s)	84, 353, 461, 629
Aor51HI	AGCGCT	1 cut(s)	658
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	659
AsuHPI	GGTGA	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	504, 694
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	694
BceAI	ACGGC	2 cut(s)	321, 618
BciT130I	CCWGG	3 cut(s)	9, 199, 339
BfaI	CTAG	2 cut(s)	333, 545
BfmI	CTRYAG	3 cut(s)	462, 660, 732
BfoI	RGCGCY	1 cut(s)	660
BglII	AGATCT	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	9, 199, 339
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	9, 199, 339
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	148, 400
BmuI	ACTGGG	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	2 cut(s)	360, 643
Bpu1102I	GCTNAGC	1 cut(s)	485
BsaJI	CCNNGG	5 cut(s)	7, 337, 387, 471, 684
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	322, 634
BseBI	CCWGG	3 cut(s)	9, 199, 339
BseDI	CCNNGG	5 cut(s)	7, 337, 387, 471, 684
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	4 cut(s)	45, 202, 374, 498
BseNI	ACTGG	2 cut(s)	322, 634
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	111, 741
Bsh1285I	CGRYCG	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	255, 417
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	2 cut(s)	255, 417
Bsp1286I	GDGCHC	2 cut(s)	504, 694
Bsp143I	GATC	3 cut(s)	116, 208, 490
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	2 cut(s)	42, 273
BspCNI	CTCAG	4 cut(s)	46, 201, 373, 499
BspHI	TCATGA	2 cut(s)	111, 751
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	2 cut(s)	466, 736
BsrI	ACTGG	2 cut(s)	322, 634
BssECI	CCNNGG	5 cut(s)	7, 337, 387, 471, 684
BssMI	GATC	3 cut(s)	116, 208, 490
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	3 cut(s)	387, 471, 684
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	3 cut(s)	9, 199, 339
Bst4CI	ACNGT	6 cut(s)	86, 269, 296, 355, 625, 758
BstC8I	GCNNGC	2 cut(s)	229, 724
BstDEI	CTNAG	6 cut(s)	54, 188, 360, 485, 507, 643
BstF5I	GGATG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	3 cut(s)	119, 211, 493
BstMBI	GATC	3 cut(s)	116, 208, 490
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	8 cut(s)	228, 464, 590, 644, 647, 656, 689, 728
BstNI	CCWGG	3 cut(s)	9, 199, 339
BstNSI	RCATGY	2 cut(s)	104, 712
BstSCI	CCNGG	3 cut(s)	7, 197, 337
BstSFI	CTRYAG	3 cut(s)	462, 660, 732
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	4 cut(s)	18, 82, 196, 504
Cac8I	GCNNGC	2 cut(s)	229, 724
CaiI	CAGNNNCTG	4 cut(s)	84, 353, 461, 629
CciI	TCATGA	2 cut(s)	111, 751
CfoI	GCGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	101, 112, 560, 709, 752
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	6 cut(s)	54, 188, 360, 485, 507, 643
DpnI	GATC	3 cut(s)	118, 210, 492
DpnII	GATC	3 cut(s)	116, 208, 490
Ecl136II	GAGCTC	1 cut(s)	692
Eco130I	CCWWGG	3 cut(s)	387, 471, 684
Eco24I	GRGCYC	2 cut(s)	504, 694
Eco32I	GATATC	1 cut(s)	571
Eco47III	AGCGCT	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	692
Eco57I	CTGAAG	2 cut(s)	45, 61
EcoICRI	GAGCTC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	3 cut(s)	7, 197, 337
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	387, 471, 684
EcoT22I	ATGCAT	2 cut(s)	224, 415
EcoT38I	GRGCYC	2 cut(s)	504, 694
ErhI	CCWWGG	3 cut(s)	387, 471, 684
FaeI	CATG	5 cut(s)	104, 115, 563, 712, 755
FaqI	GGGAC	2 cut(s)	255, 417
FatI	CATG	5 cut(s)	100, 111, 559, 708, 751
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	142
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	504, 694
FspBI	CTAG	2 cut(s)	333, 545
GlaI	GCGC	1 cut(s)	658
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	660
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	5 cut(s)	104, 115, 563, 712, 755
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	3 cut(s)	257, 440, 715
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	667, 714
Hpy188I	TCNGA	4 cut(s)	155, 286, 568, 706
Hpy188III	TCNNGA	6 cut(s)	112, 170, 362, 434, 518, 752
Hpy8I	GTNNAC	2 cut(s)	667, 714
HpyAV	CCTTC	2 cut(s)	52, 515
HpyCH4III	ACNGT	6 cut(s)	86, 269, 296, 355, 625, 758
HpyCH4V	TGCA	8 cut(s)	92, 140, 222, 413, 464, 587, 722, 734
HpyF10VI	GCNNNNNNNGC	8 cut(s)	228, 464, 590, 644, 647, 656, 689, 728
HpyF3I	CTNAG	6 cut(s)	54, 188, 360, 485, 507, 643
Hsp92II	CATG	5 cut(s)	104, 115, 563, 712, 755
HspAI	GCGC	1 cut(s)	657
Kzo9I	GATC	3 cut(s)	116, 208, 490
LmnI	GCTCC	2 cut(s)	194, 689
LweI	GCATC	2 cut(s)	148, 400
MaeI	CTAG	2 cut(s)	333, 545
MaeIII	GTNAC	7 cut(s)	14, 28, 80, 145, 349, 540, 625
MalI	GATC	3 cut(s)	118, 210, 492
MboI	GATC	3 cut(s)	116, 208, 490
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	504, 694
MluCI	AATT	2 cut(s)	238, 513
MlyI	GAGTC	2 cut(s)	449, 709
MnlI	CCTC	2 cut(s)	244, 337
Mph1103I	ATGCAT	2 cut(s)	224, 415
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	3 cut(s)	9, 199, 339
MvaI	CCWGG	3 cut(s)	9, 199, 339
MwoI	GCNNNNNNNGC	8 cut(s)	228, 464, 590, 644, 647, 656, 689, 728
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	3 cut(s)	116, 208, 490
NlaIII	CATG	5 cut(s)	104, 115, 563, 712, 755
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	3 cut(s)	80, 145, 540
NsiI	ATGCAT	2 cut(s)	224, 415
NspI	RCATGY	2 cut(s)	104, 712
OliI	CACNNNNGTG	1 cut(s)	87
PagI	TCATGA	2 cut(s)	111, 751
PciI	ACATGT	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	257
Ple19I	CGATCG	1 cut(s)	493
PleI	GAGTC	2 cut(s)	448, 709
PpsI	GAGTC	2 cut(s)	448, 709
PscI	ACATGT	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	694
Psp6I	CCWGG	3 cut(s)	7, 197, 337
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	3 cut(s)	7, 197, 337
PspN4I	GGNNCC	1 cut(s)	196
PsrI	GAACNNNNNNTAC	2 cut(s)	659, 691
PstI	CTGCAG	2 cut(s)	466, 736
PstNI	CAGNNNCTG	4 cut(s)	84, 353, 461, 629
PsuI	RGATCY	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	1 cut(s)	537
Sau3AI	GATC	3 cut(s)	116, 208, 490
SchI	GAGTC	2 cut(s)	449, 709
ScrFI	CCNGG	3 cut(s)	9, 199, 339
SduI	GDGCHC	2 cut(s)	504, 694
SfaNI	GCATC	2 cut(s)	148, 400
SfcI	CTRYAG	3 cut(s)	462, 660, 732
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	238, 513
SsiI	CCGC	2 cut(s)	42, 273
SspMI	CTAG	2 cut(s)	333, 545
SstI	GAGCTC	1 cut(s)	694
StyD4I	CCNGG	3 cut(s)	7, 197, 337
StyI	CCWWGG	3 cut(s)	387, 471, 684
TaaI	ACNGT	6 cut(s)	86, 269, 296, 355, 625, 758
TaqI	TCGA	2 cut(s)	69, 493
TasI	AATT	2 cut(s)	238, 513
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	4 cut(s)	25, 89, 196, 511
TseFI	GTSAC	3 cut(s)	80, 145, 540
Tsp45I	GTSAC	3 cut(s)	80, 145, 540
TspRI	CASTG	4 cut(s)	25, 89, 196, 511
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	2 cut(s)	104, 712
XspI	CTAG	2 cut(s)	333, 545
Zsp2I	ATGCAT	2 cut(s)	224, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.