Rh2CG587900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007692
Physical Location & Seq
Forward (+)
76499263 .. 76502564
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG587900.1

Sequence Viewer

Length: 342 bp
ATGTACCCTGGTGGTTACACTGCTGAAGTTACGAGCTTATCCGCTAAAACTACTGAGAAGGATGTTTTCGATTTCTTCAGTCACTGTGGTGCAGTTGAGCATGTTGAAATCATGAGATCTGGCGAATATACCTGTGCTGCATATGTGACATTCAGAGATGCTTATGCTCTTGAAACTGCTATTTTGCTCAGTGGAGCCAGGATTGTAGATCAATGTGTATGCATAGCACGCTGGGGAAATTATGTTGATGAGGTTGATTCTTGGCACAGTCCCGCATACAACTCTGAAAACCACAGTAGCTCAACGGTATGTGATGAATCCCTATGGATTGGATTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

4.47

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 70 2.1e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 273
AcuI CTGAAG 2 cut(s) 45, 61
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 107, 173
AjnI CCWGG 2 cut(s) 7, 197
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 2 cut(s) 36, 300
AluI AGCT 2 cut(s) 36, 300
AlwNI CAGNNNCTG 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 9, 199
BglII AGATCT 1 cut(s) 116
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 9, 199
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 9, 199
BmsI GCATC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 7
BseBI CCWGG 2 cut(s) 9, 199
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 45, 202
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 116, 208
BspACI CCGC 2 cut(s) 42, 273
BspCNI CTCAG 2 cut(s) 46, 201
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 116, 208
Bst2UI CCWGG 2 cut(s) 9, 199
Bst4CI ACNGT 4 cut(s) 86, 269, 296, 307
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 54, 188
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 119, 211
BstMBI GATC 2 cut(s) 116, 208
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 2 cut(s) 9, 199
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 7, 197
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 82, 196
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 84
CciI TCATGA 1 cut(s) 111
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 101, 112
CviJI RGCY 3 cut(s) 36, 197, 300
CviKI_1 RGCY 3 cut(s) 36, 197, 300
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 54, 188
DpnI GATC 2 cut(s) 118, 210
DpnII GATC 2 cut(s) 116, 208
Eco57I CTGAAG 2 cut(s) 45, 61
EcoRII CCWGG 2 cut(s) 7, 197
EcoT22I ATGCAT 1 cut(s) 224
FaeI CATG 2 cut(s) 104, 115
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 100, 111
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 235
Hin1II CATG 2 cut(s) 104, 115
HinfI GANTC 2 cut(s) 257, 317
Hpy188I TCNGA 2 cut(s) 155, 286
Hpy188III TCNNGA 2 cut(s) 112, 170
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 4 cut(s) 86, 269, 296, 307
HpyCH4V TGCA 3 cut(s) 92, 140, 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 2 cut(s) 54, 188
Hsp92II CATG 2 cut(s) 104, 115
Kzo9I GATC 2 cut(s) 116, 208
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 21, 105, 145, 184, 211, 217
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 4 cut(s) 14, 28, 80, 145
MalI GATC 2 cut(s) 118, 210
MboI GATC 2 cut(s) 116, 208
MboII GAAGA 1 cut(s) 67
MflI RGATCY 1 cut(s) 116
MluCI AATT 1 cut(s) 238
MnlI CCTC 1 cut(s) 244
Mph1103I ATGCAT 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 2 cut(s) 9, 199
MvaI CCWGG 2 cut(s) 9, 199
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 116, 208
NlaIII CATG 2 cut(s) 104, 115
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 80, 145
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 87
PagI TCATGA 1 cut(s) 111
PfeI GAWTC 2 cut(s) 257, 317
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 7, 197
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 2 cut(s) 7, 197
PspN4I GGNNCC 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 87
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 116, 208
ScrFI CCNGG 2 cut(s) 9, 199
SetI ASST 4 cut(s) 38, 134, 255, 302
SfaNI GCATC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 238
SsiI CCGC 2 cut(s) 42, 273
StyD4I CCNGG 2 cut(s) 7, 197
TaaI ACNGT 4 cut(s) 86, 269, 296, 307
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 238
TfiI GAWTC 2 cut(s) 257, 317
TscAI CASTG 3 cut(s) 25, 89, 196
TseFI GTSAC 2 cut(s) 80, 145
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 2 cut(s) 80, 145
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 3 cut(s) 25, 89, 196
XceI RCATGY 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.