Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Forward (+)

73307 .. 75539

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTATGTGTTTGATCCAACAACAGAAGCTGGATTGAGATTAGAGATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAAGACAACAGTCAAGATCAGCTCCCTTCTTGTCCTCCTCATCTCTTCAATGGAGGAGGAAACTACATGATGAACAGATCTATGTCTTTAATGAACGTGCAAGAAGATCATAATCAAACCTTGGATGAGGAGAATCTATCAGACGATGGGGCACATACTATGCTGGGAGAGAAGAAGAAGAGGCTGCAATTAGAGCAAGTTAAGGCATTAGAGAAGAGCTTTGAGCTTGGTAACAAGCTGGAGCCAGAGAGGAAGATACAACTAGCTAAAGCATTAGGGATGCAACCAAGACAGATCGCGATTTGGTTTCAAAACAGGAGAGCTAGGTGGAAGACTAGACAGCTCGAGAGAGATTATGATTCACTCAAGAAACAGTTTGAGTCTCTTAAATCCGACAATGCTTCTCTACTTGCCTATAACAAGAAACTCCTTGCTGAGGTAATGGCTTTAAAGAACAAAGAATGTAATGAAGGAAACATAGTAAAGAGAGAAGCAGAAGCTTCATGGAGCAACAACGGAAGCACAGAGAATAGTTCAGACATCAATCTGGAGATGCCTAGAGAGACCATTACAACACATGTGAACACGATCAAAGACCTATTCCCTTCATCGATTCGATCATCTGCACATGATGATGATCATCATCAGAATCATGAAATAGTTCAAGAAGAAAGCCTTTGTAACATGTTTAATGGCATTGATGAAACGACGCCGGCTGGTTACTGGGCATGGTCTGACCCAAACCACAACCACCACCACCACCAGTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

286

Amino Acids

33.08

Weight (kDa)

5.66

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	87 - 140	1.8e-15	Homeodomain
HALZ	PF02183	142 - 182	1.4e-12	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	386
AclWI	GGATC	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	797
AfiI	CCNNNNNNNGG	2 cut(s)	62, 523
AflIII	ACRYGT	2 cut(s)	664, 771
AgsI	TTSAA	4 cut(s)	136, 398, 752, 856
AluBI	AGCT	9 cut(s)	29, 109, 306, 313, 325, 353, 410, 430, 587
AluI	AGCT	9 cut(s)	29, 109, 306, 313, 325, 353, 410, 430, 587
Alw26I	GTCTC	2 cut(s)	474, 644
AlwI	GGATC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	747
AvaI	CYCGRG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	96, 425
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	40, 227
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	2 cut(s)	474, 644
BfaI	CTAG	4 cut(s)	350, 411, 423, 645
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	2 cut(s)	357, 630
BmuI	ACTGGG	1 cut(s)	820
BoxI	GACNNNNGTC	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	96, 425
BpmI	CTGGAG	2 cut(s)	347, 656
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	698
BsaBI	GATNNNNATC	4 cut(s)	198, 723, 726, 729
BsaHI	GRCGYC	1 cut(s)	797
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 523
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	2 cut(s)	815, 850
Bse8I	GATNNNNATC	4 cut(s)	198, 723, 726, 729
BseCI	ATCGAT	1 cut(s)	698
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	217, 372
BseJI	GATNNNNATC	4 cut(s)	198, 723, 726, 729
BseLI	CCNNNNNNNGG	2 cut(s)	62, 523
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	815, 850
BseRI	GAGGAG	3 cut(s)	114, 156, 230
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	258
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	698
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	800
BslI	CCNNNNNNNGG	2 cut(s)	62, 523
BsmAI	GTCTC	2 cut(s)	474, 644
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
Bsp68I	TCGCGA	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	514
BspDI	ATCGAT	1 cut(s)	698
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	2 cut(s)	85, 739
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	2 cut(s)	815, 850
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
BssNI	GRCGYC	1 cut(s)	797
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	98, 462
Bst6I	CTCTTC	3 cut(s)	137, 260, 296
BstACI	GRCGYC	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	217, 372
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	8 cut(s)	16, 106, 167, 196, 384, 678, 707, 727
BstMAI	GTCTC	2 cut(s)	474, 644
BstMBI	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNSI	RCATGY	2 cut(s)	668, 775
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	2 cut(s)	96, 425
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	698
BsuTUI	ATCGAT	1 cut(s)	698
BtsCI	GGATG	2 cut(s)	217, 372
BtuMI	TCGCGA	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	801
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	2 cut(s)	85, 739
Cfr10I	RCCGGY	1 cut(s)	799
ClaI	ATCGAT	1 cut(s)	698
CseI	GACGC	1 cut(s)	805
CviAII	CATG	9 cut(s)	62, 86, 154, 591, 665, 716, 740, 772, 816
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	8 cut(s)	15, 105, 166, 195, 383, 677, 706, 726
DpnII	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	137, 260, 296
EarI	CTCTTC	3 cut(s)	137, 260, 296
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	9 cut(s)	65, 89, 157, 594, 668, 719, 743, 775, 819
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FatI	CATG	9 cut(s)	61, 85, 153, 590, 664, 715, 739, 771, 815
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	2 cut(s)	224, 379
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	4 cut(s)	350, 411, 423, 645
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	2 cut(s)	347, 656
HapII	CCGG	1 cut(s)	800
HgaI	GACGC	1 cut(s)	805
Hin1I	GRCGYC	1 cut(s)	797
Hin1II	CATG	9 cut(s)	65, 89, 157, 594, 668, 719, 743, 775, 819
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	5 cut(s)	220, 446, 467, 700, 736
HpaII	CCGG	1 cut(s)	800
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	5 cut(s)	229, 481, 625, 735, 823
Hpy188III	TCNNGA	8 cut(s)	86, 101, 385, 433, 454, 635, 740, 752
Hpy8I	GTNNAC	1 cut(s)	670
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	3 cut(s)	123, 551, 702
HpyCH4III	ACNGT	2 cut(s)	98, 462
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	187, 274, 370, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	797
Hsp92II	CATG	9 cut(s)	65, 89, 157, 594, 668, 719, 743, 775, 819
KroI	GCCGGC	1 cut(s)	799
KroNI	GCCGGC	1 cut(s)	801
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	114, 328, 594
LpnPI	CCDG	9 cut(s)	15, 236, 311, 345, 388, 620, 789, 796, 813
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	2 cut(s)	357, 630
MaeI	CTAG	4 cut(s)	350, 411, 423, 645
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	317, 767, 806
MalI	GATC	8 cut(s)	15, 105, 166, 195, 383, 677, 706, 726
MboI	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	3 cut(s)	41, 100, 504
MnlI	CCTC	9 cut(s)	66, 132, 134, 135, 137, 208, 261, 330, 517
MroNI	GCCGGC	1 cut(s)	799
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	5 cut(s)	176, 288, 474, 536, 777
MslI	CAYNNNNRTG	1 cut(s)	720
MspI	CCGG	1 cut(s)	800
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	280
NaeI	GCCGGC	1 cut(s)	801
NdeII	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
NgoMIV	GCCGGC	1 cut(s)	799
NlaIII	CATG	9 cut(s)	65, 89, 157, 594, 668, 719, 743, 775, 819
NlaIV	GGNNCC	1 cut(s)	330
NruI	TCGCGA	1 cut(s)	386
NspI	RCATGY	2 cut(s)	668, 775
PaeR7I	CTCGAG	1 cut(s)	431
PagI	TCATGA	2 cut(s)	85, 739
PciI	ACATGT	2 cut(s)	664, 771
PciSI	GCTCTTC	1 cut(s)	296
PdiI	GCCGGC	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	4 cut(s)	220, 446, 700, 736
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	2 cut(s)	664, 771
PshAI	GACNNNNGTC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	164
RruI	TCGCGA	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	5 cut(s)	176, 288, 474, 536, 777
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	8 cut(s)	13, 103, 164, 193, 381, 675, 704, 724
SchI	GAGTC	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	357, 630
Sfr274I	CTCGAG	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	2 cut(s)	431, 452
SmoI	CTYRAG	2 cut(s)	431, 452
Sse9I	AATT	1 cut(s)	275
SspMI	CTAG	4 cut(s)	350, 411, 423, 645
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	98, 462
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	432, 698, 703
TasI	AATT	1 cut(s)	275
TfiI	GAWTC	4 cut(s)	220, 446, 700, 736
Tru1I	TTAA	5 cut(s)	176, 288, 474, 536, 777
Tru9I	TTAA	5 cut(s)	176, 288, 474, 536, 777
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	9 cut(s)	74, 102, 173, 194, 570, 579, 684, 756, 804
TspGWI	ACGGA	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	521
XceI	RCATGY	2 cut(s)	668, 775
XhoI	CTCGAG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	4 cut(s)	350, 411, 423, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.