Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

5404201 .. 5407533

Gene Structure 3333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACACAGAGAGTCCCATCATTTTTCCTTTTGAAGGCATATCTGCTTAGCTTTCAAAGCAGAAGATGGAGGCTAAGAAGTGGAAGAGATGACCCATTTTCAACCAATATGGAATCTCATGTGTTCTGCTATTCCCACATGAATCATGTCCTCAGGACAAAAAATGTCGGGGTAGCAGTTGGTGGTGGGGGAGTGCCTTTCATGATGAAGAGATCGCTATCGTTTTCCGGGGTTGATGATACGTGCAATCACCATCACTATGATCACCAAGATCTGCATGGAGGAGGAGATCAAGATGATTTGTCTGATGATGGGTCACAGCTGATTGGGGAGAAGAAGAAAAGGCTGAACCTTGAGCAGGTTAAAACCCTTGAGAAGAGCTTTGAGATGGGGAACAAGCTTGAGCCTGAGAGGAAATTGCAGCTTGCTAAGGCTCTTGGTCTGCAGCCAAGACAGGTTGCCATATGGTTTCAGAACAGGAGGGCTAGGTGGAAGACAAAGCAGCTGGAGAAAGACTATGATGTCCTCAAGAAGAAATTTGATGCTCTCAAGGCTGACAATGATGCCCTTCAAGCTCACAACAAGAAACTTCAGGCTGAGAAAGAGATTGATCAGGGTTCATGGAGTAATGGCAGTACTGATGACAACAGTTCTGATCATGTCAACTTAGACATGTCAAGAAGTACCACACCAGCAGCAAACAGCCCACAATCAAATTCCCAGATCACAAATGGATCAAAGAATCTTTTCCCATCATCCCTATGCAGGCCACCACATGCTAGCATAACCCAACTCCTCCAAGGCTCATCAAGGTCAGACCTCCACTGCCTCAAAGTTGACCAGATGATTCAAGATGATCAAACTTTCTGCACCATGTTCAACAATGGCTCCATTGACCAAGACCACCAAGGTAGCTTCTGGCCATGGCCTGCTGAGCAGCCACACCATTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

318

Amino Acids

36.19

Weight (kDa)

8.22

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	112 - 165	3.1e-16	Homeodomain
HALZ	PF02183	167 - 200	6.4e-13	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	349
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	1 cut(s)	920
AcsI	RAATTY	2 cut(s)	536, 715
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	637, 685
AfiI	CCNNNNNNNGG	3 cut(s)	34, 358, 765
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	6 cut(s)	34, 56, 102, 572, 851, 880
AluBI	AGCT	8 cut(s)	51, 322, 381, 400, 424, 505, 575, 915
AluI	AGCT	8 cut(s)	51, 322, 381, 400, 424, 505, 575, 915
AlwI	GGATC	1 cut(s)	742
AoxI	GGCC	3 cut(s)	767, 920, 926
ApeKI	GCWGC	5 cut(s)	421, 445, 502, 695, 937
ApoI	RAATTY	2 cut(s)	536, 715
Asp700I	GAANNNNTTC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	242, 257
AsuNHI	GCTAGC	1 cut(s)	779
AxyI	CCTNAGG	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	922
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	5 cut(s)	433, 457, 514, 707, 949
BccI	CCATC	6 cut(s)	25, 60, 261, 305, 382, 760
BclI	TGATCA	4 cut(s)	262, 610, 655, 856
BcnI	CCSGG	1 cut(s)	229
BfaI	CTAG	2 cut(s)	486, 780
BfmI	CTRYAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	5 cut(s)	422, 446, 503, 696, 938
BlpI	GCTNAGC	2 cut(s)	47, 933
BlsI	GCNGC	5 cut(s)	423, 447, 504, 697, 939
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	889
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	532, 553
BmtI	GCTAGC	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	2 cut(s)	47, 933
BpuEI	CTTGAG	5 cut(s)	374, 392, 422, 512, 533
BpuMI	CCSGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	217
BsaJI	CCNNGG	4 cut(s)	228, 799, 907, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 358, 765
Bse21I	CCTNAGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	217
BseDI	CCNNGG	4 cut(s)	228, 799, 907, 923
BseGI	GGATG	1 cut(s)	755
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	34, 358, 765
BseMII	CTCAG	4 cut(s)	166, 399, 588, 924
BseRI	GAGGAG	3 cut(s)	297, 300, 785
BseXI	GCAGC	5 cut(s)	433, 457, 514, 707, 949
BsgI	GTGCAG	1 cut(s)	853
BshFI	GGCC	3 cut(s)	769, 922, 928
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	34, 358, 765
BsnI	GGCC	3 cut(s)	769, 922, 928
Bsp143I	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
Bsp1720I	GCTNAGC	2 cut(s)	47, 933
Bsp19I	CCATGG	1 cut(s)	923
BspANI	GGCC	3 cut(s)	769, 922, 928
BspCNI	CTCAG	4 cut(s)	165, 400, 589, 925
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	889
BspMAI	CTGCAG	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	783
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	371
BssECI	CCNNGG	4 cut(s)	228, 799, 907, 923
BssMI	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
BssT1I	CCWWGG	3 cut(s)	799, 907, 923
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	3 cut(s)	79, 203, 371
BstBAI	YACGTR	1 cut(s)	243
BstC8I	GCNNGC	4 cut(s)	426, 767, 781, 930
BstDEI	CTNAG	8 cut(s)	47, 74, 152, 408, 429, 597, 667, 933
BstDSI	CCRYGG	1 cut(s)	923
BstENI	CCTNNNNNAGG	2 cut(s)	32, 356
BstF5I	GGATG	1 cut(s)	755
BstKTI	GATC	9 cut(s)	215, 265, 274, 292, 613, 658, 726, 737, 859
BstMBI	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 551, 572, 934
BstNSI	RCATGY	2 cut(s)	676, 779
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	5 cut(s)	433, 457, 514, 707, 949
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	769, 922, 928
BtgI	CCRYGG	1 cut(s)	923
BtsCI	GGATG	1 cut(s)	755
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	1 cut(s)	823
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	426, 767, 781, 930
CciI	TCATGA	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	636, 684
CviQI	GTAC	2 cut(s)	636, 684
DdeI	CTNAG	8 cut(s)	47, 74, 152, 408, 429, 597, 667, 933
DpnI	GATC	9 cut(s)	214, 264, 273, 291, 612, 657, 725, 736, 858
DpnII	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
DrdI	GACNNNNNNGTC	1 cut(s)	521
DseDI	GACNNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	920
Eam1104I	CTCTTC	3 cut(s)	79, 203, 371
EarI	CTCTTC	3 cut(s)	79, 203, 371
Eco130I	CCWWGG	3 cut(s)	799, 907, 923
Eco57I	CTGAAG	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	2 cut(s)	32, 356
EcoT14I	CCWWGG	3 cut(s)	799, 907, 923
ErhI	CCWWGG	3 cut(s)	799, 907, 923
FauNDI	CATATG	1 cut(s)	464
FbaI	TGATCA	4 cut(s)	262, 610, 655, 856
Fnu4HI	GCNGC	5 cut(s)	422, 446, 503, 696, 938
FokI	GGATG	1 cut(s)	742
Fsp4HI	GCNGC	5 cut(s)	422, 446, 503, 696, 938
FspBI	CTAG	2 cut(s)	486, 780
GluI	GCNGC	5 cut(s)	422, 446, 503, 696, 938
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	3 cut(s)	769, 922, 928
HapII	CCGG	1 cut(s)	228
HincII	GTYRAC	2 cut(s)	664, 838
HindII	GTYRAC	2 cut(s)	664, 838
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	5 cut(s)	12, 113, 142, 742, 847
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	242, 257
Hpy166II	GTNNAC	2 cut(s)	664, 838
Hpy188I	TCNGA	4 cut(s)	307, 474, 655, 817
Hpy188III	TCNNGA	6 cut(s)	154, 202, 293, 529, 678, 851
Hpy8I	GTNNAC	2 cut(s)	664, 838
HpyAV	CCTTC	2 cut(s)	28, 578
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	6 cut(s)	246, 277, 421, 445, 765, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 551, 572, 934
HpyF3I	CTNAG	8 cut(s)	47, 74, 152, 408, 429, 597, 667, 933
HpySE526I	ACGT	1 cut(s)	242
Ksp22I	TGATCA	4 cut(s)	262, 610, 655, 856
Kzo9I	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	5 cut(s)	433, 457, 514, 707, 949
LweI	GCATC	2 cut(s)	532, 553
MaeI	CTAG	2 cut(s)	486, 780
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	9 cut(s)	214, 264, 273, 291, 612, 657, 725, 736, 858
MboI	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
MboII	GAAGA	8 cut(s)	75, 96, 220, 346, 349, 388, 505, 544
MflI	RGATCY	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	922
MluCI	AATT	3 cut(s)	416, 536, 715
MluNI	TGGCCA	1 cut(s)	922
MlyI	GAGTC	1 cut(s)	21
Mox20I	TGGCCA	1 cut(s)	922
MroXI	GAANNNNTTC	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	922
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	2 cut(s)	258, 760
Msp20I	TGGCCA	1 cut(s)	922
MspA1I	CMGCKG	2 cut(s)	322, 505
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	57, 551, 572, 934
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	923
NdeI	CATATG	1 cut(s)	464
NdeII	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
NheI	GCTAGC	1 cut(s)	779
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	1 cut(s)	315
NspI	RCATGY	2 cut(s)	676, 779
PagI	TCATGA	1 cut(s)	201
PciI	ACATGT	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	4 cut(s)	113, 142, 742, 847
PkrI	GCNGC	5 cut(s)	423, 447, 504, 697, 939
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	243
PscI	ACATGT	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	889
PstI	CTGCAG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	2 cut(s)	322, 505
RsaI	GTAC	2 cut(s)	637, 685
RsaNI	GTAC	2 cut(s)	636, 684
RseI	CAYNNNNRTG	2 cut(s)	258, 760
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	5 cut(s)	422, 446, 503, 696, 938
Sau3AI	GATC	9 cut(s)	212, 262, 271, 289, 610, 655, 723, 734, 856
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	532, 553
SfcI	CTRYAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	258, 760
SmlI	CTYRAG	5 cut(s)	353, 371, 401, 527, 548
SmoI	CTYRAG	5 cut(s)	353, 371, 401, 527, 548
Sse9I	AATT	3 cut(s)	416, 536, 715
SspMI	CTAG	2 cut(s)	486, 780
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	3 cut(s)	799, 907, 923
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	1 cut(s)	245
TasI	AATT	3 cut(s)	416, 536, 715
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	4 cut(s)	113, 142, 742, 847
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	830
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	5 cut(s)	421, 445, 502, 695, 937
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	5 cut(s)	155, 190, 221, 609, 941
TspRI	CASTG	1 cut(s)	830
XagI	CCTNNNNNAGG	2 cut(s)	32, 356
XapI	RAATTY	2 cut(s)	536, 715
XceI	RCATGY	2 cut(s)	676, 779
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 728
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	2 cut(s)	486, 780
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.