Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Forward (+)

36797161 .. 36799493

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCCTTCCCACCTTGTCATAGTTTCATGTTCCAAACCCATGAAGATCCAGACCTCCACCTCTCTGCAGCTTCTTCCTCCCTCAACAATCTTCCCTCTTGTCCACCGCAACACTTCCATGGCGGTGGCGGTGGAATTCCTTTCATGATGAAGAGATCGCTATCCTTCTCCGGGGATGATAAGTGCAATCACCATCACTATGATCATCAAGATCTGCATGGAGGAGGAGATCAAGATGATTTGTCTGATGATGGGTCACAGCTGATTGGGGAGAAGAAGAAAAGGCTGAACCTTGAGCAGGTTAAGACCCTTGAGAAGAGCTTTGAGATGGGGAACAAGCTTGAGCCTGAGAGGAAATTGCAGCTTGCTAAGGCTCTTGGTCTGCAGCCAAGACAGGTTGCCATATGGTTTCAGAACAGGAGGGCTAGGTGGAAGACAAAGCAGTTGGAGAAAGACTATGATGTCCTCAAGAAGAAGTTTGATGCTCTCAAGGCTGACAATGATGCCCTTCAATCTCACAACAAGAAACTTCAGTCTGAGTTGTTGGCTATAAAAGGCAGTAAAGATTCAAACTTTGAAGGGGGGCTTAGCAATAACATGAAGAAAGAGACTGATCAAGGTTCATGGAGTAATGGCAGTACTGATGACAACAGTTCTGATCATATCAACTTAGACATGTCAAGAAGTACCACACCAGCAGCAACTAGCCCTCAATCAAATACCCAGATCACAAATGGATCAAAAAACCTGTTCCCATCATCCCTATGCAGGCCACCTCATGCTAGCATAACCCAACTCCTCCAAGGCTCATCAAGGTCATCAGACCTCCACTGCCTCAAAGTTGACCAGATGATTCAAGACGACCAAACCTTCTGCACCATGTTCAACAATGGCTCCATTGACCAAGACCACCAAGGTAACTTCTGGCCATGGCCTGCTGAGCAGCCGCACCATTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

321

Amino Acids

35.9

Weight (kDa)

6.4

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 145	3.1e-16	Homeodomain
HALZ	PF02183	147 - 185	1.6e-14	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	4 cut(s)	107, 123, 129, 947
AclWI	GGATC	2 cut(s)	41, 745
AcoI	YGGCCR	1 cut(s)	926
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	640, 688
AfiI	CCNNNNNNNGG	3 cut(s)	171, 298, 768
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	5 cut(s)	512, 570, 578, 857, 886
AluBI	AGCT	5 cut(s)	71, 262, 321, 340, 364
AluI	AGCT	5 cut(s)	71, 262, 321, 340, 364
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	41, 745
AoxI	GGCC	4 cut(s)	3, 770, 926, 932
ApeKI	GCWGC	5 cut(s)	68, 361, 385, 698, 943
ApoI	RAATTY	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	182
AsuNHI	GCTAGC	1 cut(s)	782
BalI	TGGCCA	1 cut(s)	928
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	5 cut(s)	80, 373, 397, 710, 955
BccI	CCATC	4 cut(s)	201, 245, 322, 763
BclI	TGATCA	3 cut(s)	202, 613, 658
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	3 cut(s)	426, 705, 783
BfmI	CTRYAG	2 cut(s)	66, 383
BfuAI	ACCTGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	6 cut(s)	69, 362, 386, 699, 944, 947
BlpI	GCTNAGC	2 cut(s)	587, 939
BlsI	GCNGC	6 cut(s)	70, 363, 387, 700, 945, 948
BmcAI	AGTACT	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	895
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	472, 493
BmtI	GCTAGC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu1102I	GCTNAGC	2 cut(s)	587, 939
BpuEI	CTTGAG	5 cut(s)	314, 332, 362, 452, 473
BpuMI	CCSGG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	160
BsaJI	CCNNGG	5 cut(s)	118, 171, 802, 913, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	878, 908
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 298, 768
Bse8I	GATNNNNATC	1 cut(s)	160
BseDI	CCNNGG	5 cut(s)	118, 171, 802, 913, 929
BseGI	GGATG	2 cut(s)	181, 758
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	3 cut(s)	171, 298, 768
BseMII	CTCAG	3 cut(s)	339, 528, 930
BseRI	GAGGAG	3 cut(s)	237, 240, 788
BseXI	GCAGC	5 cut(s)	80, 373, 397, 710, 955
BsgI	GTGCAG	1 cut(s)	859
BshFI	GGCC	4 cut(s)	5, 772, 928, 934
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	171, 298, 768
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	5, 772, 928, 934
Bsp143I	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
Bsp1720I	GCTNAGC	2 cut(s)	587, 939
Bsp19I	CCATGG	2 cut(s)	118, 929
BspACI	CCGC	4 cut(s)	107, 123, 129, 947
BspANI	GGCC	4 cut(s)	5, 772, 928, 934
BspCNI	CTCAG	3 cut(s)	340, 529, 931
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	895
BspMAI	CTGCAG	2 cut(s)	70, 387
BspMI	ACCTGC	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	2 cut(s)	41, 745
BspQI	GCTCTTC	1 cut(s)	311
BssECI	CCNNGG	5 cut(s)	118, 171, 802, 913, 929
BssMI	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
BssT1I	CCWWGG	4 cut(s)	118, 802, 913, 929
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	2 cut(s)	146, 311
BstC8I	GCNNGC	4 cut(s)	366, 770, 784, 936
BstDEI	CTNAG	6 cut(s)	348, 369, 537, 587, 670, 939
BstDSI	CCRYGG	2 cut(s)	118, 929
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	181, 758
BstKTI	GATC	9 cut(s)	49, 158, 205, 214, 232, 616, 661, 729, 740
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 940
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	2 cut(s)	66, 383
BstV1I	GCAGC	5 cut(s)	80, 373, 397, 710, 955
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	46, 211
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	2 cut(s)	46, 211
BsuRI	GGCC	4 cut(s)	5, 772, 928, 934
BtgI	CCRYGG	2 cut(s)	118, 929
BtsCI	GGATG	2 cut(s)	181, 758
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	829
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	366, 770, 784, 936
CciI	TCATGA	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	639, 687
CviQI	GTAC	2 cut(s)	639, 687
DdeI	CTNAG	6 cut(s)	348, 369, 537, 587, 670, 939
DpnI	GATC	9 cut(s)	48, 157, 204, 213, 231, 615, 660, 728, 739
DpnII	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	926
Eam1104I	CTCTTC	2 cut(s)	146, 311
EarI	CTCTTC	2 cut(s)	146, 311
Eco130I	CCWWGG	4 cut(s)	118, 802, 913, 929
Eco57I	CTGAAG	1 cut(s)	515
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	135
EcoT14I	CCWWGG	4 cut(s)	118, 802, 913, 929
ErhI	CCWWGG	4 cut(s)	118, 802, 913, 929
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	3 cut(s)	202, 613, 658
Fnu4HI	GCNGC	6 cut(s)	69, 362, 386, 699, 944, 947
FokI	GGATG	2 cut(s)	188, 745
Fsp4HI	GCNGC	6 cut(s)	69, 362, 386, 699, 944, 947
FspBI	CTAG	3 cut(s)	426, 705, 783
GluI	GCNGC	6 cut(s)	69, 362, 386, 699, 944, 947
HaeIII	GGCC	4 cut(s)	5, 772, 928, 934
HapII	CCGG	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	566, 853
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	104, 844
Hpy188I	TCNGA	5 cut(s)	247, 414, 538, 658, 823
Hpy188III	TCNNGA	7 cut(s)	50, 145, 209, 233, 469, 681, 857
Hpy8I	GTNNAC	2 cut(s)	104, 844
HpyAV	CCTTC	5 cut(s)	16, 175, 518, 572, 880
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	7 cut(s)	68, 186, 217, 361, 385, 768, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 940
HpyF3I	CTNAG	6 cut(s)	348, 369, 537, 587, 670, 939
Ksp22I	TGATCA	3 cut(s)	202, 613, 658
Kzo9I	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	899
Lsp1109I	GCAGC	5 cut(s)	80, 373, 397, 710, 955
LweI	GCATC	2 cut(s)	472, 493
MaeI	CTAG	3 cut(s)	426, 705, 783
MaeIII	GTNAC	2 cut(s)	255, 917
MalI	GATC	9 cut(s)	48, 157, 204, 213, 231, 615, 660, 728, 739
MboI	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
MflI	RGATCY	2 cut(s)	46, 211
MlsI	TGGCCA	1 cut(s)	928
MluCI	AATT	2 cut(s)	135, 356
MluNI	TGGCCA	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	928
MscI	TGGCCA	1 cut(s)	928
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
Msp20I	TGGCCA	1 cut(s)	928
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	491, 940
NciI	CCSGG	1 cut(s)	172
NcoI	CCATGG	2 cut(s)	118, 929
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
NheI	GCTAGC	1 cut(s)	782
NlaIV	GGNNCC	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	1 cut(s)	679
PagI	TCATGA	1 cut(s)	144
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	566, 853
PkrI	GCNGC	6 cut(s)	70, 363, 387, 700, 945, 948
PscI	ACATGT	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	895
PstI	CTGCAG	2 cut(s)	70, 387
PsuI	RGATCY	2 cut(s)	46, 211
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	640, 688
RsaNI	GTAC	2 cut(s)	639, 687
RseI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	6 cut(s)	69, 362, 386, 699, 944, 947
Sau3AI	GATC	9 cut(s)	46, 155, 202, 211, 229, 613, 658, 726, 737
ScaI	AGTACT	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	472, 493
SfcI	CTRYAG	2 cut(s)	66, 383
SmiMI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
SmlI	CTYRAG	5 cut(s)	293, 311, 341, 467, 488
SmoI	CTYRAG	5 cut(s)	293, 311, 341, 467, 488
Sse9I	AATT	2 cut(s)	135, 356
SsiI	CCGC	4 cut(s)	107, 123, 129, 947
SspMI	CTAG	3 cut(s)	426, 705, 783
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	4 cut(s)	118, 802, 913, 929
TaaI	ACNGT	1 cut(s)	653
TasI	AATT	2 cut(s)	135, 356
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	1 cut(s)	949
TfiI	GAWTC	2 cut(s)	566, 853
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	836
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	5 cut(s)	68, 361, 385, 698, 943
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	7 cut(s)	16, 57, 133, 164, 612, 614, 947
TspRI	CASTG	1 cut(s)	836
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XspI	CTAG	3 cut(s)	426, 705, 783
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.