Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

4913699 .. 4915976

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTATATGTATGAGGAGGAAAGGAACAATATCAATAATAATCAAGAAGGACTGAGATTGGAGATGGCCTTTCCTCAACATGGCTTCATGTTTCAGCAACTCCATGAAGACAATGCTCATCACTTACCTTCCCCAACCTCTCTCCCCTCTTGTCCTCCTCATCTCTTCTATGGAGGAGGAGGAAACTACATGATGAACAGATCAATGTCGTTCACGGGAGTATCAGATCATCATCATCTAACTCAAAAAAGCCCGACAACAACGAACAACATGAATGATCAAGACCAGGTAGGCGAGGAAGACAACCTATCAGACGATGGGTCACATATGATGTTAGGAGAGAAGAAGAAGAGGCTGAATTTAGAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAGCCAGAGAGGAAGATGCAGCTTGCTAAGGCTTTAGGATTGCAGCCTAGGCAGATTGCAATATGGTTTCAGAACAGGAGAGCTAGGTGGAAGACAAAGCAGCTCGAGAGAGACTATGATTCTCTCAAAAAACAGTTCGATGTTTTGAAATCGGACAATGATTCTCTTCTTGCCCACAACAAGAAACTACATGCTGAGTTAGTGGCATTGAAGAAACACGACCGTAAAGAATCAGCAAAGATCAAGAGAGAATTCGCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAAAATAATCATAACAATAATAGTTCAGACGCTAATCATGTGAGCATGATCAAAGATCTTTTCCCTTCTTCGATCCGATCCGCGACCGCGACCACGACCTCTACCCATATTGATCATCAGATTGTTCAAGATCAAGATCAAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGTCGGCTAGTTATTGGGCATGGCCTGACCAGCAGCAACAACATCACAATCATCATCAGTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

314

Amino Acids

36.28

Weight (kDa)

6.36

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	115 - 168	8.8e-16	Homeodomain
HALZ	PF02183	170 - 209	3.6e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	881
AccII	CGCG	2 cut(s)	782, 788
AciI	CCGC	2 cut(s)	780, 786
AclWI	GGATC	2 cut(s)	766, 771
AcsI	RAATTY	2 cut(s)	358, 662
AcyI	GRCGYC	1 cut(s)	878
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	559, 622, 827, 859, 940
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	7 cut(s)	390, 397, 409, 433, 494, 514, 674
AluI	AGCT	7 cut(s)	390, 397, 409, 433, 494, 514, 674
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	766, 771
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	66, 899
ApeKI	GCWGC	4 cut(s)	430, 454, 511, 910
ApoI	RAATTY	2 cut(s)	358, 662
Asp700I	GAANNNNTTC	1 cut(s)	389
AspA2I	CCTAGG	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	515
AvrII	CCTAGG	1 cut(s)	458
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BbsI	GAAGAC	3 cut(s)	114, 306, 509
BbvI	GCAGC	4 cut(s)	442, 466, 523, 922
BccI	CCATC	2 cut(s)	58, 311
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	3 cut(s)	277, 747, 811
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	4 cut(s)	398, 459, 495, 885
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	4 cut(s)	431, 455, 512, 911
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	4 cut(s)	432, 456, 513, 912
Bme1390I	CCNGG	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	417
BpiI	GAAGAC	3 cut(s)	114, 306, 509
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	438
BsaBI	GATNNNNATC	2 cut(s)	231, 834
BsaHI	GRCGYC	1 cut(s)	878
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse8I	GATNNNNATC	2 cut(s)	231, 834
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	458
BseJI	GATNNNNATC	2 cut(s)	231, 834
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	44, 597
BseRI	GAGGAG	4 cut(s)	29, 147, 189, 192
BseXI	GCAGC	4 cut(s)	442, 466, 523, 922
Bsh1236I	CGCG	2 cut(s)	782, 788
Bsh1285I	CGRYCG	2 cut(s)	634, 786
BshFI	GGCC	2 cut(s)	68, 901
BsiEI	CGRYCG	2 cut(s)	634, 786
BsiHKCI	CYCGRG	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	68, 901
BsoBI	CYCGRG	1 cut(s)	515
BspACI	CCGC	2 cut(s)	780, 786
BspANI	GGCC	2 cut(s)	68, 901
BspCNI	CTCAG	2 cut(s)	45, 598
BspFNI	CGCG	2 cut(s)	782, 788
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	766, 771
BspQI	GCTCTTC	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	458
BssNI	GRCGYC	1 cut(s)	878
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	546, 635
Bst6I	CTCTTC	4 cut(s)	170, 344, 380, 582
BstACI	GRCGYC	1 cut(s)	878
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	53, 438, 606
BstFNI	CGCG	2 cut(s)	782, 788
BstMAI	GTCTC	1 cut(s)	516
BstMCI	CGRYCG	2 cut(s)	634, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 907
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	2 cut(s)	782, 788
BstV1I	GCAGC	4 cut(s)	442, 466, 523, 922
BstV2I	GAAGAC	3 cut(s)	114, 306, 509
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	2 cut(s)	68, 901
Cac8I	GCNNGC	1 cut(s)	435
CseI	GACGC	1 cut(s)	737
CsiI	ACCWGGT	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	53, 438, 606
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	4 cut(s)	170, 344, 380, 582
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	4 cut(s)	170, 344, 380, 582
Eco130I	CCWWGG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	3 cut(s)	277, 747, 811
Fnu4HI	GCNGC	4 cut(s)	431, 455, 512, 911
Fsp4HI	GCNGC	4 cut(s)	431, 455, 512, 911
FspBI	CTAG	4 cut(s)	398, 459, 495, 885
GluI	GCNGC	4 cut(s)	431, 455, 512, 911
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	68, 901
HgaI	GACGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	878
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	3 cut(s)	530, 572, 641
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	7 cut(s)	226, 313, 483, 565, 727, 776, 819
Hpy188III	TCNNGA	6 cut(s)	44, 281, 517, 655, 827, 833
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	880, 883
HpyAV	CCTTC	3 cut(s)	41, 138, 774
HpyCH4III	ACNGT	2 cut(s)	546, 635
HpyCH4IV	ACGT	1 cut(s)	878
HpyCH4V	TGCA	4 cut(s)	430, 454, 470, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 907
HpyF3I	CTNAG	3 cut(s)	53, 438, 606
HpySE526I	ACGT	1 cut(s)	878
Hsp92I	GRCGYC	1 cut(s)	878
Ksp22I	TGATCA	3 cut(s)	277, 747, 811
LguI	GCTCTTC	1 cut(s)	380
LmnI	GCTCC	2 cut(s)	412, 681
LpnPI	CCDG	7 cut(s)	272, 299, 395, 429, 472, 915, 920
Lsp1109I	GCAGC	4 cut(s)	442, 466, 523, 922
LweI	GCATC	1 cut(s)	417
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	4 cut(s)	398, 459, 495, 885
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	1 cut(s)	321
MfeI	CAATTG	1 cut(s)	940
MflI	RGATCY	1 cut(s)	754
MluCI	AATT	3 cut(s)	358, 662, 940
MroXI	GAANNNNTTC	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	940
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	782, 788
MwoI	GCNNNNNNNGC	2 cut(s)	460, 907
NdeI	CATATG	1 cut(s)	327
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	530, 572, 641
PkrI	GCNGC	4 cut(s)	432, 456, 513, 912
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	754
SapI	GCTCTTC	1 cut(s)	380
SatI	GCNGC	4 cut(s)	431, 455, 512, 911
ScrFI	CCNGG	1 cut(s)	287
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	515
SlaI	CTCGAG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	358, 662, 940
SsiI	CCGC	2 cut(s)	780, 786
SspMI	CTAG	4 cut(s)	398, 459, 495, 885
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	2 cut(s)	546, 635
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	4 cut(s)	393, 516, 549, 770
TasI	AATT	3 cut(s)	358, 662, 940
TfiI	GAWTC	3 cut(s)	530, 572, 641
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	4 cut(s)	430, 454, 511, 910
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	6 cut(s)	76, 120, 209, 287, 666, 885
XapI	RAATTY	2 cut(s)	358, 662
XceI	RCATGY	1 cut(s)	605
XhoI	CTCGAG	1 cut(s)	515
XmaJI	CCTAGG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	4 cut(s)	398, 459, 495, 885
ZraI	GACGTC	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.