Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

2403606 .. 2404256

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATGGCCTTCCCTCCTTGTCACACTTTCATGTTTCAAAACCATGAAGATCCAGACCTCCACCTTGCTAATTCCTCTTGCCCTCCTCAGCACTTCCACGGTGGTGGGATGCCTTTTATGATGAAGAGATCACTATCGTTTTCAGGTATTGAGAACAATAAATGCCACCATCACGACCAAGAAGCGGCGCTGCATGGAGGAGGAGAGGATGATTTGTCGGACGACGGATCCCAGATGGGAGAAAAGAAGAAGAGGCTGAATCTTGAACAGGTCAAGACTCTGGAGAAGAGCTTCGAAATGGGGAACAAGCTCGAACCGGAGAGAAAAATGCAGCTGGCTAAGGCGCTTGGTTTGCAACCGAGACAGATTGCTATATGGTTTCAGAACAGGAGGGCAAGGTGGAAGACAAAGCAGTTGGAGAAAGACTATGATGTTTTGAAGAAAAAATTTGATGCTCTTAAGGCTGACAATGATGCTCTTCAGGCTCACAATAAGAAGCTTCAAGCTGAGGTAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

174

Amino Acids

19.82

Weight (kDa)

8.39

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	44, 222, 235
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	38, 266, 439, 503
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	291, 310, 334, 499, 506
AluI	AGCT	5 cut(s)	291, 310, 334, 499, 506
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	3 cut(s)	44, 222, 235
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	190, 331
ApoI	RAATTY	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	190, 346
AsuII	TTCGAA	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	410
BbvCI	CCTCAGC	2 cut(s)	87, 507
BbvI	GCAGC	2 cut(s)	177, 343
BccI	CCATC	2 cut(s)	177, 229
BcoDI	GTCTC	1 cut(s)	355
BfoI	RGCGCY	2 cut(s)	191, 347
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	3 cut(s)	186, 191, 332
BlsI	GCNGC	3 cut(s)	187, 192, 333
BmiI	GGNNCC	1 cut(s)	229
BmsI	GCATC	3 cut(s)	99, 442, 463
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	3 cut(s)	87, 339, 507
Bpu14I	TTCGAA	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	114, 214
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	101, 498
BseRI	GAGGAG	3 cut(s)	75, 213, 216
BseXI	GCAGC	2 cut(s)	177, 343
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	49, 128, 227
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	100, 499
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	3 cut(s)	44, 222, 235
BspQI	GCTCTTC	2 cut(s)	281, 483
BspT104I	TTCGAA	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	3 cut(s)	49, 128, 227
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	4 cut(s)	119, 245, 281, 483
BstAFI	CTTAAG	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	87, 339, 507
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	114, 214
BstH2I	RGCGCY	2 cut(s)	191, 347
BstHHI	GCGC	2 cut(s)	190, 346
BstKTI	GATC	3 cut(s)	52, 131, 230
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	49, 128, 227
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 461, 482
BstV1I	GCAGC	2 cut(s)	177, 343
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	49, 227
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	2 cut(s)	49, 227
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	114, 214
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	2 cut(s)	190, 346
CviAII	CATG	3 cut(s)	31, 44, 194
DdeI	CTNAG	3 cut(s)	87, 339, 507
DpnI	GATC	3 cut(s)	51, 130, 229
DpnII	GATC	3 cut(s)	49, 128, 227
Eam1104I	CTCTTC	4 cut(s)	119, 245, 281, 483
EarI	CTCTTC	4 cut(s)	119, 245, 281, 483
Eco57I	CTGAAG	1 cut(s)	464
FaeI	CATG	3 cut(s)	34, 47, 197
FaiI	YATR	7 cut(s)	32, 45, 119, 195, 374, 376, 429
FatI	CATG	3 cut(s)	30, 43, 193
Fnu4HI	GCNGC	3 cut(s)	186, 191, 332
FokI	GGATG	2 cut(s)	121, 221
Fsp4HI	GCNGC	3 cut(s)	186, 191, 332
GlaI	GCGC	2 cut(s)	189, 345
GluI	GCNGC	3 cut(s)	186, 191, 332
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	2 cut(s)	191, 347
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	2 cut(s)	190, 346
Hin1II	CATG	3 cut(s)	34, 47, 197
Hin6I	GCGC	2 cut(s)	188, 344
HinP1I	GCGC	2 cut(s)	188, 344
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	259, 277
HpaII	CCGG	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	220, 384
Hpy188III	TCNNGA	5 cut(s)	53, 173, 263, 274, 281
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	193, 331, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 461, 482
HpyF3I	CTNAG	3 cut(s)	87, 339, 507
Hsp92II	CATG	3 cut(s)	34, 47, 197
HspAI	GCGC	2 cut(s)	188, 344
Kzo9I	GATC	3 cut(s)	49, 128, 227
LguI	GCTCTTC	2 cut(s)	281, 483
LpnPI	CCDG	9 cut(s)	66, 129, 245, 254, 266, 320, 330, 373, 467
Lsp1109I	GCAGC	2 cut(s)	177, 343
LweI	GCATC	3 cut(s)	99, 442, 463
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	51, 130, 229
MboI	GATC	3 cut(s)	49, 128, 227
MboII	GAAGA	8 cut(s)	59, 136, 259, 262, 298, 415, 451, 470
MflI	RGATCY	2 cut(s)	49, 227
MluCI	AATT	3 cut(s)	70, 446, 513
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	198, 396
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	2 cut(s)	459, 520
MslI	CAYNNNNRTG	2 cut(s)	29, 102
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	352, 461, 482
NdeII	GATC	3 cut(s)	49, 128, 227
NlaIII	CATG	3 cut(s)	34, 47, 197
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	294
OliI	CACNNNNGTG	1 cut(s)	102
PciSI	GCTCTTC	2 cut(s)	281, 483
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	187, 192, 333
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	49, 227
PvuII	CAGCTG	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	29, 102
SapI	GCTCTTC	2 cut(s)	281, 483
SaqAI	TTAA	2 cut(s)	459, 520
SatI	GCNGC	3 cut(s)	186, 191, 332
Sau3AI	GATC	3 cut(s)	49, 128, 227
SchI	GAGTC	1 cut(s)	271
SfaNI	GCATC	3 cut(s)	99, 442, 463
SfuI	TTCGAA	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	29, 102
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	70, 446, 513
SsiI	CCGC	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	294, 312
TasI	AATT	3 cut(s)	70, 446, 513
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	459, 520
Tru9I	TTAA	2 cut(s)	459, 520
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	190, 331
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	19, 60, 137
TspGWI	ACGGA	1 cut(s)	240
Vha464I	CTTAAG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.