Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

2992821 .. 2994288

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGAGATCACTGTCGTTTTCAGGTGTTGAGAACAATAGATGCCACCATCACGACCAAGAAGCGGCGCTGCATGGAGGAGGAGGAGGGGATGATGATTTATCGGACGACGGATCCCAGATGGGAGAGAAGAAGAAGAGGCTGAATCTTGAGCAGGTCAAGACTCTGGAGAAGAGCTTCGAAATAGGGAACAAGCTAGAACCGGAGAGAAAAATGCAGCTGGCTAAGGCACTCGGTTTGCAGCCGAGACAGATTGCTATATGGTTTCAGAACAGAAGGGCAAGGTGGAAGACAAAGCAGTTGGAGAAAGACTACGATGTTTTGAGGAACAAATTTGATGCTCTTAAGGCTGACAATGATGCCCTTCAGGCTCACAATAAGAAGCTTCAAGCTGAGTTATTGGCTCTAAAAAGCAAAGATTCATCAAATGAAGGAGGGTTTAATTTCAAGAAAGAAACTGATCAGGGTTCTTGGAGCAATGGAAGTGAGAACAGTTCTGACCACCACCACCACCATCATCTCAACTTAGAAATTTCAAGAACAACGGCAACCACCACCAGCCCACCTTCTGATTCTCCTCAGATGAACGGAAAAAACCTCTTTCCACCGTCCTCCTCCTCCCTCAGGTCTGCAAGCACAACCCATCTCCTCCAAGGATCATCGAGGTCAGATCTTCAGTCACTCAAATTTGATCAGATGATTCAGGACGAAGGATTGTGCAGCATGTTCAATGGCATTGATCAAGAGCAGCAAGGGTTTTGGCCATGGCCTGAGCAGCAGCATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

264

Amino Acids

29.76

Weight (kDa)

6.7

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	108, 121, 664
AcoI	YGGCCR	1 cut(s)	761
AcsI	RAATTY	3 cut(s)	332, 531, 686
AcuI	CTGAAG	2 cut(s)	350, 659
AfiI	CCNNNNNNNGG	2 cut(s)	64, 624
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	389, 448, 537, 730
AluBI	AGCT	5 cut(s)	177, 196, 220, 385, 392
AluI	AGCT	5 cut(s)	177, 196, 220, 385, 392
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	3 cut(s)	108, 121, 664
AoxI	GGCC	2 cut(s)	761, 767
ApeKI	GCWGC	7 cut(s)	70, 217, 241, 720, 748, 775, 778
ApoI	RAATTY	3 cut(s)	332, 531, 686
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	6 cut(s)	57, 229, 253, 732, 760, 787
BccI	CCATC	4 cut(s)	57, 115, 522, 651
BceAI	ACGGC	1 cut(s)	561
BclI	TGATCA	3 cut(s)	460, 691, 739
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	8 cut(s)	66, 71, 218, 242, 721, 749, 776, 779
BlsI	GCNGC	8 cut(s)	67, 72, 219, 243, 722, 750, 777, 780
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	3 cut(s)	32, 328, 349
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	225, 771
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	652, 764
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 624
Bse21I	CCTNAGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	484
BseDI	CCNNGG	2 cut(s)	652, 764
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	64, 624
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	4 cut(s)	384, 593, 637, 762
BseRI	GAGGAG	7 cut(s)	93, 96, 99, 567, 604, 607, 638
BseXI	GCAGC	6 cut(s)	57, 229, 253, 732, 760, 787
BsgI	GTGCAG	1 cut(s)	739
BshFI	GGCC	2 cut(s)	763, 769
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	64, 624
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	763, 769
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
Bsp19I	CCATGG	1 cut(s)	764
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	2 cut(s)	763, 769
BspCNI	CTCAG	4 cut(s)	385, 592, 636, 763
BspLI	GGNNCC	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	3 cut(s)	108, 121, 664
BspQI	GCTCTTC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	652, 764
BssMI	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
BssT1I	CCWWGG	2 cut(s)	652, 764
Bst4CI	ACNGT	3 cut(s)	15, 494, 609
Bst6I	CTCTTC	2 cut(s)	131, 167
BstAFI	CTTAAG	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	222, 634
BstDEI	CTNAG	6 cut(s)	225, 393, 526, 579, 623, 771
BstDSI	CCRYGG	1 cut(s)	764
BstENI	CCTNNNNNAGG	1 cut(s)	622
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	7 cut(s)	11, 116, 463, 659, 673, 694, 742
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 368, 775
BstNSI	RCATGY	1 cut(s)	727
BstV1I	GCAGC	6 cut(s)	57, 229, 253, 732, 760, 787
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	113, 670
BstYI	RGATCY	2 cut(s)	113, 670
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	763, 769
BtgI	CCRYGG	1 cut(s)	764
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	222, 634
CfoI	GCGC	1 cut(s)	70
CviAII	CATG	3 cut(s)	74, 724, 765
DdeI	CTNAG	6 cut(s)	225, 393, 526, 579, 623, 771
DpnI	GATC	7 cut(s)	10, 115, 462, 658, 672, 693, 741
DpnII	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
EaeI	YGGCCR	1 cut(s)	761
Eam1104I	CTCTTC	2 cut(s)	131, 167
EarI	CTCTTC	2 cut(s)	131, 167
Eco130I	CCWWGG	2 cut(s)	652, 764
Eco57I	CTGAAG	2 cut(s)	350, 659
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	652, 764
ErhI	CCWWGG	2 cut(s)	652, 764
FaeI	CATG	3 cut(s)	77, 727, 768
FaiI	YATR	5 cut(s)	75, 260, 262, 725, 766
FatI	CATG	3 cut(s)	73, 723, 764
FbaI	TGATCA	3 cut(s)	460, 691, 739
Fnu4HI	GCNGC	8 cut(s)	66, 71, 218, 242, 721, 749, 776, 779
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	8 cut(s)	66, 71, 218, 242, 721, 749, 776, 779
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	8 cut(s)	66, 71, 218, 242, 721, 749, 776, 779
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	763, 769
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	77, 727, 768
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	5 cut(s)	145, 163, 419, 572, 700
HpaII	CCGG	1 cut(s)	203
Hpy188I	TCNGA	7 cut(s)	106, 270, 499, 571, 582, 670, 696
Hpy188III	TCNNGA	8 cut(s)	53, 149, 160, 167, 448, 537, 704, 743
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	5 cut(s)	270, 374, 425, 576, 704
HpyCH4III	ACNGT	3 cut(s)	15, 494, 609
HpyCH4V	TGCA	5 cut(s)	73, 217, 241, 632, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 368, 775
HpyF3I	CTNAG	6 cut(s)	225, 393, 526, 579, 623, 771
Hsp92II	CATG	3 cut(s)	77, 727, 768
HspAI	GCGC	1 cut(s)	68
Ksp22I	TGATCA	3 cut(s)	460, 691, 739
Kzo9I	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	474
Lsp1109I	GCAGC	6 cut(s)	57, 229, 253, 732, 760, 787
LweI	GCATC	3 cut(s)	32, 328, 349
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	7 cut(s)	10, 115, 462, 658, 672, 693, 741
MboI	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
MboII	GAAGA	7 cut(s)	16, 142, 145, 148, 184, 301, 665
MflI	RGATCY	2 cut(s)	113, 670
MlsI	TGGCCA	1 cut(s)	763
MluCI	AATT	4 cut(s)	332, 442, 531, 686
MluNI	TGGCCA	1 cut(s)	763
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	763
MseI	TTAA	3 cut(s)	345, 441, 790
Msp20I	TGGCCA	1 cut(s)	763
MspA1I	CMGCKG	1 cut(s)	220
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	347, 368, 775
NcoI	CCATGG	1 cut(s)	764
NdeII	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
NlaIII	CATG	3 cut(s)	77, 727, 768
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	678
NspI	RCATGY	1 cut(s)	727
NspV	TTCGAA	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	4 cut(s)	145, 419, 572, 700
PkrI	GCNGC	8 cut(s)	67, 72, 219, 243, 722, 750, 777, 780
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	113, 670
PvuII	CAGCTG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	345, 441, 790
SatI	GCNGC	8 cut(s)	66, 71, 218, 242, 721, 749, 776, 779
Sau3AI	GATC	7 cut(s)	8, 113, 460, 656, 670, 691, 739
SchI	GAGTC	1 cut(s)	157
SfaNI	GCATC	3 cut(s)	32, 328, 349
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	149, 344
SmoI	CTYRAG	2 cut(s)	149, 344
Sse9I	AATT	4 cut(s)	332, 442, 531, 686
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	197
StyI	CCWWGG	2 cut(s)	652, 764
TaaI	ACNGT	3 cut(s)	15, 494, 609
TaqI	TCGA	2 cut(s)	180, 662
TasI	AATT	4 cut(s)	332, 442, 531, 686
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	145, 419, 572, 700
Tru1I	TTAA	3 cut(s)	345, 441, 790
Tru9I	TTAA	3 cut(s)	345, 441, 790
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	7 cut(s)	70, 217, 241, 720, 748, 775, 778
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	5 cut(s)	17, 411, 444, 599, 776
TspGWI	ACGGA	2 cut(s)	126, 603
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	622
XapI	RAATTY	3 cut(s)	332, 531, 686
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.