Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

2402391 .. 2402804

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTGCAGTTATTGGCTCTAAAAAGCAAAGATTCATCAAATGAAGGGGGGTTTGATTTCAAGAAAGAAACTGATCAGGGTTCTTGGAGCAACGGAAGTGAGAACAGTTCAGACCACCACCACCACCACCACCACCATCTCAACCTAGAAATTTCAAGAACACCGGCAACCACCAGCAGCCCGCCTTCTGATTCTCCTCATGAGATGAATGGAAAAAACATCTTCCCACCGTCCTCCTCCTCCCTCAGGTCTGCAAGCACAACCCAACTCCTCCAAGGATCATCACGGTCAGATCTTCAGTGCCTCAAAGTTGATCAGATGATTCAGGATGAAGGCTTGTGCAGCATGTTCAATGGGATTGATCAAGAGCATCAAGGGTTTTGGCCATGGCCTGAGCAGCACCATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

5.83

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	61, 156, 352
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	383, 389
ApeKI	GCWGC	3 cut(s)	177, 342, 397
ApoI	RAATTY	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	189, 354, 409
BccI	CCATC	1 cut(s)	144
BclI	TGATCA	3 cut(s)	73, 313, 361
BfaI	CTAG	1 cut(s)	146
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	3 cut(s)	178, 343, 398
BlsI	GCNGC	3 cut(s)	179, 344, 399
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	274, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	274, 386
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	259, 384
BseRI	GAGGAG	4 cut(s)	186, 226, 229, 260
BseXI	GCAGC	3 cut(s)	189, 354, 409
BsgI	GTGCAG	2 cut(s)	26, 361
BshFI	GGCC	2 cut(s)	385, 391
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	246
BsnI	GGCC	2 cut(s)	385, 391
Bsp143I	GATC	5 cut(s)	73, 278, 292, 313, 361
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	385, 391
BspCNI	CTCAG	2 cut(s)	258, 385
BspHI	TCATGA	1 cut(s)	199
BspPI	GGATC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	274, 386
BssMI	GATC	5 cut(s)	73, 278, 292, 313, 361
BssT1I	CCWWGG	2 cut(s)	274, 386
Bst4CI	ACNGT	3 cut(s)	107, 231, 288
BstC8I	GCNNGC	2 cut(s)	182, 256
BstDEI	CTNAG	2 cut(s)	245, 393
BstDSI	CCRYGG	1 cut(s)	386
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	5 cut(s)	76, 281, 295, 316, 364
BstMBI	GATC	5 cut(s)	73, 278, 292, 313, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	342, 397
BstNSI	RCATGY	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	189, 354, 409
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	385, 391
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	182, 256
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	163
CviAII	CATG	3 cut(s)	200, 346, 387
CviJI	RGCY	5 cut(s)	17, 180, 336, 385, 391
CviKI_1	RGCY	5 cut(s)	17, 180, 336, 385, 391
DdeI	CTNAG	2 cut(s)	245, 393
DpnI	GATC	5 cut(s)	75, 280, 294, 315, 363
DpnII	GATC	5 cut(s)	73, 278, 292, 313, 361
EaeI	YGGCCR	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	274, 386
Eco57I	CTGAAG	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	274, 386
ErhI	CCWWGG	2 cut(s)	274, 386
FaeI	CATG	3 cut(s)	203, 349, 390
FaiI	YATR	3 cut(s)	201, 347, 388
FatI	CATG	3 cut(s)	199, 345, 386
FauI	CCCGC	1 cut(s)	189
FbaI	TGATCA	3 cut(s)	73, 313, 361
Fnu4HI	GCNGC	3 cut(s)	178, 343, 398
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	178, 343, 398
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	3 cut(s)	178, 343, 398
HaeIII	GGCC	2 cut(s)	385, 391
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	3 cut(s)	203, 349, 390
HinfI	GANTC	3 cut(s)	32, 191, 322
HpaII	CCGG	1 cut(s)	164
Hpy188I	TCNGA	4 cut(s)	112, 190, 292, 318
Hpy188III	TCNNGA	5 cut(s)	61, 156, 200, 326, 365
HpyAV	CCTTC	3 cut(s)	38, 195, 326
HpyCH4III	ACNGT	3 cut(s)	107, 231, 288
HpyCH4V	TGCA	3 cut(s)	7, 254, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	342, 397
HpyF3I	CTNAG	2 cut(s)	245, 393
Hsp92II	CATG	3 cut(s)	203, 349, 390
Ksp22I	TGATCA	3 cut(s)	73, 313, 361
Kzo9I	GATC	5 cut(s)	73, 278, 292, 313, 361
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	62, 177, 187, 232, 311, 405
Lsp1109I	GCAGC	3 cut(s)	189, 354, 409
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	146
MalI	GATC	5 cut(s)	75, 280, 294, 315, 363
MboI	GATC	5 cut(s)	73, 278, 292, 313, 361
MboII	GAAGA	2 cut(s)	214, 287
MflI	RGATCY	1 cut(s)	292
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	385
MnlI	CCTC	7 cut(s)	207, 244, 247, 250, 254, 281, 314
Mox20I	TGGCCA	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	1 cut(s)	412
Msp20I	TGGCCA	1 cut(s)	385
MspI	CCGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	342, 397
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	5 cut(s)	73, 278, 292, 313, 361
NlaIII	CATG	3 cut(s)	203, 349, 390
NspI	RCATGY	1 cut(s)	349
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	32, 191, 322
PkrI	GCNGC	3 cut(s)	179, 344, 399
PsuI	RGATCY	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	3 cut(s)	178, 343, 398
Sau3AI	GATC	5 cut(s)	73, 278, 292, 313, 361
SetI	ASST	2 cut(s)	147, 251
SfaNI	GCATC	1 cut(s)	379
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	274, 386
TaaI	ACNGT	3 cut(s)	107, 231, 288
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	32, 191, 322
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	3 cut(s)	177, 342, 397
TspDTI	ATGAA	5 cut(s)	24, 57, 221, 345, 398
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.