Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Forward (+)

83447016 .. 83449281

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG606700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCTTTCCACCTTGTCATAGTTTCATGTTTCAAACCCATGAAGATCCAGACCTCCACCTCTCTGCAGCTTCTTCCTCCCTCAACAATCTTCCCTCTTGTCCACCACAACACTTCCATGGTGGTGGGGGAGTGCCTTTCATGATGAAGAGATCGCTATCGTTTTCCGGGGTTGATGATAAGTGCAATCACCATCACTATGATCACCAAGATCTGCATGGAGGAGGAGATCAAGATGATTTGTCTGATGATGGGTCACAGCTGATTGGGGAGAAGAAGAAAAGGCTGAACCTTGAGCAGGTTAAGACCCTTGAGAAGAGCTTTGAGATGGGGAACAAGCTTGAGCCTGAGAGGAAATTGCAGCTTGCTAAGGCTCTTGGTCTGCAGCCAAGACAGGTTGCCATATGGTTTCAGAACAGGAGGGCTAGGTGGAAGACAAAGCAGCTGGAGAAAGACTATGATGTCCTCAAGAAGAAATTTGATGCTCTCAAGGCTGACAATGATGCCCTTCAAGCTCACAACAAGAAACTTCAGGCTGAGTTATTGGCTGTAAAAGGTAGTAAAGATTCAAACTTCGAAGGGGGGCTTAACAATCATTTGAAGAAAGAGATTGATCAGGGTTCATGGAGTAATGGCAGTACTGATGACAACAGTTCTGATCATGTCAACTTAGACATGTCAAGAAGTACCACACCAGCAGCAAACAGCCCACAATCAAATTCCCAGATCACAAATGGATCAAAGAATCTCTTCCCATCATCCCTATGCAGGCCACCACATGCTAGCATAACCCAACTCCTCCAAGGCTCATCAAGGTCAGACCTCCACTGCCTCAAAGTTGACCAGATGATTCAAGATGACCAAACTTTCTGCACCATGTTCAACAATGGCTCCATTGACCAAGACCACCAAGGTAGCTTCTGGCCATGGCCTGCTGAGCAGCCACACCATTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

319

Amino Acids

35.8

Weight (kDa)

6.43

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 145	3.1e-16	Homeodomain
HALZ	PF02183	147 - 185	8.5e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	289
AclWI	GGATC	2 cut(s)	41, 745
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	2 cut(s)	476, 718
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	640, 688
AfiI	CCNNNNNNNGG	2 cut(s)	298, 768
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	6 cut(s)	35, 512, 570, 601, 854, 883
AluBI	AGCT	8 cut(s)	71, 262, 321, 340, 364, 445, 515, 918
AluI	AGCT	8 cut(s)	71, 262, 321, 340, 364, 445, 515, 918
AlwI	GGATC	2 cut(s)	41, 745
AoxI	GGCC	4 cut(s)	3, 770, 923, 929
ApeKI	GCWGC	6 cut(s)	68, 361, 385, 442, 698, 940
ApoI	RAATTY	2 cut(s)	476, 718
Asp700I	GAANNNNTTC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	182, 197
AsuII	TTCGAA	1 cut(s)	576
AsuNHI	GCTAGC	1 cut(s)	782
BalI	TGGCCA	1 cut(s)	925
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
BccI	CCATC	4 cut(s)	201, 245, 322, 763
BclI	TGATCA	3 cut(s)	202, 613, 658
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	2 cut(s)	426, 783
BfmI	CTRYAG	2 cut(s)	66, 383
BfuAI	ACCTGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	6 cut(s)	70, 363, 387, 444, 700, 942
BmcAI	AGTACT	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	472, 493
BmtI	GCTAGC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	936
Bpu14I	TTCGAA	1 cut(s)	576
BpuEI	CTTGAG	5 cut(s)	314, 332, 362, 452, 473
BpuMI	CCSGG	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	5 cut(s)	118, 168, 802, 910, 926
BsaXI	ACNNNNNCTCC	2 cut(s)	875, 905
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 768
Bse8I	GATNNNNATC	1 cut(s)	157
BseDI	CCNNGG	5 cut(s)	118, 168, 802, 910, 926
BseGI	GGATG	1 cut(s)	758
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	298, 768
BseMII	CTCAG	3 cut(s)	339, 528, 927
BseRI	GAGGAG	3 cut(s)	237, 240, 788
BseXI	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
BsgI	GTGCAG	1 cut(s)	856
BshFI	GGCC	4 cut(s)	5, 772, 925, 931
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	298, 768
BsnI	GGCC	4 cut(s)	5, 772, 925, 931
Bsp119I	TTCGAA	1 cut(s)	576
Bsp143I	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	2 cut(s)	118, 926
BspANI	GGCC	4 cut(s)	5, 772, 925, 931
BspCNI	CTCAG	3 cut(s)	340, 529, 928
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	892
BspMAI	CTGCAG	2 cut(s)	70, 387
BspMI	ACCTGC	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	2 cut(s)	41, 745
BspQI	GCTCTTC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	576
BssECI	CCNNGG	5 cut(s)	118, 168, 802, 910, 926
BssMI	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
BssT1I	CCWWGG	4 cut(s)	118, 802, 910, 926
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	3 cut(s)	143, 311, 755
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	366, 770, 784, 933
BstDEI	CTNAG	5 cut(s)	348, 369, 537, 670, 936
BstDSI	CCRYGG	2 cut(s)	118, 926
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	758
BstKTI	GATC	9 cut(s)	49, 155, 205, 214, 232, 616, 661, 729, 740
BstMBI	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 512, 937
BstNSI	RCATGY	2 cut(s)	679, 782
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	2 cut(s)	66, 383
BstV1I	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	46, 211
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	2 cut(s)	46, 211
BsuRI	GGCC	4 cut(s)	5, 772, 925, 931
BtgI	CCRYGG	2 cut(s)	118, 926
BtsCI	GGATG	1 cut(s)	758
BtsI	GCAGTG	1 cut(s)	826
BtsIMutI	CAGTG	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	366, 770, 784, 933
CciI	TCATGA	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	639, 687
CviQI	GTAC	2 cut(s)	639, 687
DdeI	CTNAG	5 cut(s)	348, 369, 537, 670, 936
DpnI	GATC	9 cut(s)	48, 154, 204, 213, 231, 615, 660, 728, 739
DpnII	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	3 cut(s)	143, 311, 755
EarI	CTCTTC	3 cut(s)	143, 311, 755
Eco130I	CCWWGG	4 cut(s)	118, 802, 910, 926
Eco57I	CTGAAG	1 cut(s)	515
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoT14I	CCWWGG	4 cut(s)	118, 802, 910, 926
ErhI	CCWWGG	4 cut(s)	118, 802, 910, 926
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 734, 766
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	3 cut(s)	202, 613, 658
Fnu4HI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
FspBI	CTAG	2 cut(s)	426, 783
GluI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	5, 772, 925, 931
HapII	CCGG	1 cut(s)	168
HincII	GTYRAC	2 cut(s)	667, 841
HindII	GTYRAC	2 cut(s)	667, 841
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	3 cut(s)	566, 745, 850
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	182, 197
Hpy166II	GTNNAC	3 cut(s)	104, 667, 841
Hpy188I	TCNGA	4 cut(s)	247, 414, 658, 820
Hpy188III	TCNNGA	6 cut(s)	50, 142, 233, 469, 681, 854
Hpy8I	GTNNAC	3 cut(s)	104, 667, 841
HpyAV	CCTTC	2 cut(s)	518, 572
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	7 cut(s)	68, 186, 217, 361, 385, 768, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 512, 937
HpyF3I	CTNAG	5 cut(s)	348, 369, 537, 670, 936
Ksp22I	TGATCA	3 cut(s)	202, 613, 658
Kzo9I	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
LweI	GCATC	2 cut(s)	472, 493
MaeI	CTAG	2 cut(s)	426, 783
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	9 cut(s)	48, 154, 204, 213, 231, 615, 660, 728, 739
MboI	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
MflI	RGATCY	2 cut(s)	46, 211
MlsI	TGGCCA	1 cut(s)	925
MluCI	AATT	3 cut(s)	356, 476, 718
MluNI	TGGCCA	1 cut(s)	925
Mox20I	TGGCCA	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	925
MseI	TTAA	2 cut(s)	303, 588
MslI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
Msp20I	TGGCCA	1 cut(s)	925
MspA1I	CMGCKG	2 cut(s)	262, 445
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	491, 512, 937
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	2 cut(s)	118, 926
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
NheI	GCTAGC	1 cut(s)	782
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	2 cut(s)	679, 782
NspV	TTCGAA	1 cut(s)	576
PagI	TCATGA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	566, 745, 850
PkrI	GCNGC	6 cut(s)	70, 363, 387, 444, 700, 942
PscI	ACATGT	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	892
PstI	CTGCAG	2 cut(s)	70, 387
PsuI	RGATCY	2 cut(s)	46, 211
PvuII	CAGCTG	2 cut(s)	262, 445
RsaI	GTAC	2 cut(s)	640, 688
RsaNI	GTAC	2 cut(s)	639, 687
RseI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	303, 588
SatI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
Sau3AI	GATC	9 cut(s)	46, 152, 202, 211, 229, 613, 658, 726, 737
ScaI	AGTACT	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	472, 493
SfcI	CTRYAG	2 cut(s)	66, 383
SfuI	TTCGAA	1 cut(s)	576
SmiMI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
SmlI	CTYRAG	5 cut(s)	293, 311, 341, 467, 488
SmoI	CTYRAG	5 cut(s)	293, 311, 341, 467, 488
Sse9I	AATT	3 cut(s)	356, 476, 718
SspMI	CTAG	2 cut(s)	426, 783
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	4 cut(s)	118, 802, 910, 926
TaaI	ACNGT	1 cut(s)	653
TaqI	TCGA	1 cut(s)	576
TasI	AATT	3 cut(s)	356, 476, 718
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	3 cut(s)	566, 745, 850
Tru1I	TTAA	2 cut(s)	303, 588
Tru9I	TTAA	2 cut(s)	303, 588
TscAI	CASTG	1 cut(s)	833
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	6 cut(s)	68, 361, 385, 442, 698, 940
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	6 cut(s)	16, 57, 130, 161, 612, 944
TspRI	CASTG	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	476, 718
XceI	RCATGY	2 cut(s)	679, 782
XcmI	CCANNNNNNNNNTGG	2 cut(s)	215, 731
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	2 cut(s)	426, 783
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.