Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

3227308 .. 3229709

Gene Structure 2402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1049000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATGGCCTTCCCTCCTTGTCACACTTTCATGTTTCAAAACCATGAAGATCCAGACCTCCACCTTGCTAATTCCTCTTGCCCCCCTCAACACTTCCATGGTGGTGGGATGCCTTTTATGATGAAGAGATCACTATCGTTTTCAGGTGTTGAGAACAATAAATGCCACCATCACGACCAAGAAGCGGCGCTGCATGGAGGAGGAGAGGATGATTTGTCGGACGACGGATCCCAGATGGGAGAAAAGAAGAAGAGGCTGAATCTTGAGCAGGTCAAGACTCTGGAGAAGAGCTTCGAAATCGGGAACAAGCTAGAACCGGAGAGAAAAATGCAGCTGGCTAAGGCGCTTGGTTTGCAACCGAGACAGGTTGCTATATGGTTTCAGAACAGGAGGGCGAGGTGGAAGACAAAGCAGTTGGAGAAAGACTATGATGTTTTGAAGAAAAAATTTGATGCTCTTAAGGCTGACAATGATGCTCTTCAGGCTCACAATAAGAAGCTTCAAGCTGAGTTATTGGCTCTAAAAAGCAAAGATTCATCAAATGAAGGGGGGTTTAATTTCAAGAAAGAAACTGACCAGGGTTCTTGGAGCAATGGAAGTGAGAACAGTTCAGGCCACCACCACCATCTCAACCTAGAAATTTCAAGAACACCGACAACCACCAGCAGCCCGCCTTCTGATTCTCCGCATGAGATGAATGGAAAAAACCTCTTCCCACCGTCCTCCTCCTCCCTCAGGTCTGCAAGCATAACCCAACCCCTCCAAGGATCATCACGGTCAGATCTTCAGTGCCTCAAAGTTGATCAGATGATTCAGGATGAAGGCTTGTGCAGCATGTTCAATGGGATTGATCAGGAGCATCAAGGGTTTTGGCCATGGCCTGAGCAGCACCATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

301

Amino Acids

33.92

Weight (kDa)

6.55

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	82 - 135	2.6e-16	Homeodomain
HALZ	PF02183	137 - 177	3.1e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AciI	CCGC	3 cut(s)	185, 671, 686
AclWI	GGATC	4 cut(s)	44, 222, 235, 775
AcoI	YGGCCR	1 cut(s)	872
AcsI	RAATTY	2 cut(s)	446, 639
AcuI	CTGAAG	2 cut(s)	464, 770
AfiI	CCNNNNNNNGG	3 cut(s)	184, 735, 764
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	6 cut(s)	38, 439, 503, 562, 645, 841
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	5 cut(s)	291, 310, 334, 499, 506
AluI	AGCT	5 cut(s)	291, 310, 334, 499, 506
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	4 cut(s)	44, 222, 235, 775
AoxI	GGCC	4 cut(s)	6, 613, 872, 878
ApeKI	GCWGC	5 cut(s)	190, 331, 666, 831, 886
ApoI	RAATTY	2 cut(s)	446, 639
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	190, 346
AsuII	TTCGAA	1 cut(s)	294
AxyI	CCTNAGG	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	874
BamHI	GGATCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	5 cut(s)	177, 343, 678, 843, 898
BccI	CCATC	3 cut(s)	177, 229, 633
BciT130I	CCWGG	1 cut(s)	578
BclI	TGATCA	2 cut(s)	802, 850
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	311, 635
BfoI	RGCGCY	2 cut(s)	191, 347
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	6 cut(s)	186, 191, 332, 667, 832, 887
BlsI	GCNGC	6 cut(s)	187, 192, 333, 668, 833, 888
Bme1390I	CCNGG	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	4 cut(s)	99, 442, 463, 868
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	2 cut(s)	339, 882
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	97, 577, 763, 875
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 735, 764
Bse21I	CCTNAGG	1 cut(s)	734
Bse3DI	GCAATG	1 cut(s)	598
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	4 cut(s)	97, 577, 763, 875
BseGI	GGATG	3 cut(s)	114, 214, 823
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	3 cut(s)	184, 735, 764
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	498, 748, 873
BseRI	GAGGAG	4 cut(s)	213, 216, 715, 718
BseXI	GCAGC	5 cut(s)	177, 343, 678, 843, 898
BsgI	GTGCAG	1 cut(s)	850
BshFI	GGCC	4 cut(s)	8, 615, 874, 880
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	184, 735, 764
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	4 cut(s)	8, 615, 874, 880
Bsp119I	TTCGAA	1 cut(s)	294
Bsp143I	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
Bsp19I	CCATGG	2 cut(s)	97, 875
BspACI	CCGC	3 cut(s)	185, 671, 686
BspANI	GGCC	4 cut(s)	8, 615, 874, 880
BspCNI	CTCAG	3 cut(s)	499, 747, 874
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	4 cut(s)	44, 222, 235, 775
BspQI	GCTCTTC	2 cut(s)	281, 483
BspT104I	TTCGAA	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	598
BssECI	CCNNGG	4 cut(s)	97, 577, 763, 875
BssMI	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
BssT1I	CCWWGG	3 cut(s)	97, 763, 875
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	3 cut(s)	608, 720, 777
Bst6I	CTCTTC	5 cut(s)	119, 245, 281, 483, 716
BstAFI	CTTAAG	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	336, 671, 745
BstDEI	CTNAG	4 cut(s)	339, 507, 734, 882
BstDSI	CCRYGG	2 cut(s)	97, 875
BstENI	CCTNNNNNAGG	1 cut(s)	733
BstF5I	GGATG	3 cut(s)	114, 214, 823
BstH2I	RGCGCY	2 cut(s)	191, 347
BstHHI	GCGC	2 cut(s)	190, 346
BstKTI	GATC	7 cut(s)	52, 131, 230, 770, 784, 805, 853
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
BstMWI	GCNNNNNNNGC	5 cut(s)	352, 461, 482, 831, 886
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	576
BstV1I	GCAGC	5 cut(s)	177, 343, 678, 843, 898
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	3 cut(s)	49, 227, 781
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	3 cut(s)	49, 227, 781
Bsu36I	CCTNAGG	1 cut(s)	734
BsuRI	GGCC	4 cut(s)	8, 615, 874, 880
BtgI	CCRYGG	2 cut(s)	97, 875
BtsCI	GGATG	3 cut(s)	114, 214, 823
BtsIMutI	CAGTG	1 cut(s)	794
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	336, 671, 745
CfoI	GCGC	2 cut(s)	190, 346
CviAII	CATG	7 cut(s)	31, 44, 98, 194, 689, 835, 876
DdeI	CTNAG	4 cut(s)	339, 507, 734, 882
DpnI	GATC	7 cut(s)	51, 130, 229, 769, 783, 804, 852
DpnII	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
EaeI	YGGCCR	1 cut(s)	872
Eam1104I	CTCTTC	5 cut(s)	119, 245, 281, 483, 716
EarI	CTCTTC	5 cut(s)	119, 245, 281, 483, 716
Eco130I	CCWWGG	3 cut(s)	97, 763, 875
Eco57I	CTGAAG	2 cut(s)	464, 770
Eco81I	CCTNAGG	1 cut(s)	734
EcoNI	CCTNNNNNAGG	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	576
EcoT14I	CCWWGG	3 cut(s)	97, 763, 875
ErhI	CCWWGG	3 cut(s)	97, 763, 875
FaeI	CATG	7 cut(s)	34, 47, 101, 197, 692, 838, 879
FatI	CATG	7 cut(s)	30, 43, 97, 193, 688, 834, 875
FauI	CCCGC	1 cut(s)	678
FbaI	TGATCA	2 cut(s)	802, 850
Fnu4HI	GCNGC	6 cut(s)	186, 191, 332, 667, 832, 887
FokI	GGATG	3 cut(s)	121, 221, 830
Fsp4HI	GCNGC	6 cut(s)	186, 191, 332, 667, 832, 887
FspBI	CTAG	2 cut(s)	311, 635
GlaI	GCGC	2 cut(s)	189, 345
GluI	GCNGC	6 cut(s)	186, 191, 332, 667, 832, 887
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	2 cut(s)	191, 347
HaeIII	GGCC	4 cut(s)	8, 615, 874, 880
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	2 cut(s)	190, 346
Hin1II	CATG	7 cut(s)	34, 47, 101, 197, 692, 838, 879
Hin6I	GCGC	2 cut(s)	188, 344
HinP1I	GCGC	2 cut(s)	188, 344
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	259, 277, 533, 680, 811
HpaII	CCGG	1 cut(s)	317
Hpy188I	TCNGA	5 cut(s)	220, 384, 679, 781, 807
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	4 cut(s)	19, 539, 684, 815
HpyCH4III	ACNGT	3 cut(s)	608, 720, 777
HpyCH4V	TGCA	5 cut(s)	193, 331, 355, 743, 831
HpyF10VI	GCNNNNNNNGC	5 cut(s)	352, 461, 482, 831, 886
HpyF3I	CTNAG	4 cut(s)	339, 507, 734, 882
Hsp92II	CATG	7 cut(s)	34, 47, 101, 197, 692, 838, 879
HspAI	GCGC	2 cut(s)	188, 344
Ksp22I	TGATCA	2 cut(s)	802, 850
Kzo9I	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
LguI	GCTCTTC	2 cut(s)	281, 483
LmnI	GCTCC	2 cut(s)	588, 856
Lsp1109I	GCAGC	5 cut(s)	177, 343, 678, 843, 898
LweI	GCATC	4 cut(s)	99, 442, 463, 868
MaeI	CTAG	2 cut(s)	311, 635
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	7 cut(s)	51, 130, 229, 769, 783, 804, 852
MboI	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
MflI	RGATCY	3 cut(s)	49, 227, 781
MlsI	TGGCCA	1 cut(s)	874
MluCI	AATT	4 cut(s)	70, 446, 556, 639
MluNI	TGGCCA	1 cut(s)	874
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	198, 396
Mox20I	TGGCCA	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	874
MseI	TTAA	3 cut(s)	459, 555, 901
MslI	CAYNNNNRTG	3 cut(s)	29, 96, 102
Msp20I	TGGCCA	1 cut(s)	874
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	5 cut(s)	352, 461, 482, 831, 886
NcoI	CCATGG	2 cut(s)	97, 875
NdeII	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
NlaIII	CATG	7 cut(s)	34, 47, 101, 197, 692, 838, 879
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	294
PciSI	GCTCTTC	2 cut(s)	281, 483
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	4 cut(s)	259, 533, 680, 811
PkrI	GCNGC	6 cut(s)	187, 192, 333, 668, 833, 888
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	3 cut(s)	49, 227, 781
PvuII	CAGCTG	1 cut(s)	334
RseI	CAYNNNNRTG	3 cut(s)	29, 96, 102
SapI	GCTCTTC	2 cut(s)	281, 483
SaqAI	TTAA	3 cut(s)	459, 555, 901
SatI	GCNGC	6 cut(s)	186, 191, 332, 667, 832, 887
Sau3AI	GATC	7 cut(s)	49, 128, 227, 767, 781, 802, 850
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	578
SfaNI	GCATC	4 cut(s)	99, 442, 463, 868
SfuI	TTCGAA	1 cut(s)	294
SmiMI	CAYNNNNRTG	3 cut(s)	29, 96, 102
SmlI	CTYRAG	2 cut(s)	263, 458
SmoI	CTYRAG	2 cut(s)	263, 458
Sse9I	AATT	4 cut(s)	70, 446, 556, 639
SsiI	CCGC	3 cut(s)	185, 671, 686
SspMI	CTAG	2 cut(s)	311, 635
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	3 cut(s)	97, 763, 875
TaaI	ACNGT	3 cut(s)	608, 720, 777
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	70, 446, 556, 639
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	259, 533, 680, 811
Tru1I	TTAA	3 cut(s)	459, 555, 901
Tru9I	TTAA	3 cut(s)	459, 555, 901
TscAI	CASTG	1 cut(s)	794
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	5 cut(s)	190, 331, 666, 831, 886
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	8 cut(s)	19, 60, 137, 525, 558, 710, 834, 887
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	794
Vha464I	CTTAAG	1 cut(s)	458
XagI	CCTNNNNNAGG	1 cut(s)	733
XapI	RAATTY	2 cut(s)	446, 639
XceI	RCATGY	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	2 cut(s)	311, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.