Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Forward (+)

25144902 .. 25147362

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G269900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATGGCCTTCCCACCTTGTCATAGTTTCATGTTCCAAACCCATGAAGATCCAGACCTCCACCTTGCTAATTCCTCCTCCCTCAACAACCTTCCCTCTTGCCCACCTCAGCACTTCCATGGTGGTGGAGTGCCTTTTATGATGAAGAGATCACTGTCATTTTCAGGTGTTGAGAACAATAAGTGCCATCATCATGAAGAAGTAGGACTGCATGGAGGAGGAGAGGATGATTTGTCTGATGATGGATCCCAGATTGGTGAGAAGAAGAAAAGGCTGAATCTTGAGCAGGTTAAGACTCTTGAGAAGAGCTTTGAGATGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCCAAGGCTCTTGGTCTGCAGCCAAGACAGATAGCCATATGGTTTCAGAACAGGAGGGCCAGGTGGAAGACCAAGCAATTGGAGAAAGACTATGATGTCTTGAAGAAAAAGTTTGATGCACTTAAGGCTGACAATGATGTTCTTCAGGATCACAATAACAAGCTTCAGGCTGAGTTATTGTCTATGAAAAGCAAGGATTCAAATGAAGCTGGGCTTAATAATAATCTCAAGAAAGAAACTGATCAGGGTTCTTGGAGCAATGGAAGTGAGAACAGTTCAGATCATCATCATCATCATCATCTCAACCTAGATATTTCAAGAACACCAGCAACAACCAACAGCTCACCATCTAATTCCCAGCAGATAAATGGAAAAAACCTCTTCCCATCCTCCCTCAGACCTACAAGCATAACCCAACTCCTCCAAGGGTCATCATCAAGATCAGATCTTCAGTGCCTCAAAGTTGATCAAATGATTCAAGATGAAAGCTTGTGCAGCATGTTCAATGGAATTGATCAAGAGCAGCAGCAAGGCTATTGGCCATGGCCTGAGCAGCACCACTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

308

Amino Acids

34.89

Weight (kDa)

6.43

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	277
AclWI	GGATC	4 cut(s)	44, 240, 253, 510
AcoI	YGGCCR	2 cut(s)	354, 893
AcuI	CTGAAG	3 cut(s)	482, 503, 788
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	5 cut(s)	457, 555, 672, 833, 859
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	7 cut(s)	309, 328, 352, 517, 563, 696, 843
AluI	AGCT	7 cut(s)	309, 328, 352, 517, 563, 696, 843
AlwI	GGATC	4 cut(s)	44, 240, 253, 510
AoxI	GGCC	5 cut(s)	6, 354, 411, 893, 899
ApeKI	GCWGC	6 cut(s)	349, 373, 849, 877, 880, 907
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	269, 690
BalI	TGGCCA	2 cut(s)	356, 895
BamHI	GGATCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	428
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	6 cut(s)	361, 385, 861, 889, 892, 919
BccI	CCATC	5 cut(s)	195, 236, 310, 709, 748
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	3 cut(s)	595, 820, 868
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	6 cut(s)	350, 374, 850, 878, 881, 908
BlsI	GCNGC	6 cut(s)	351, 375, 851, 879, 882, 909
Bme1390I	CCNGG	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	428
Bpu10I	CCTNAGC	2 cut(s)	108, 903
BpuEI	CTTGAG	4 cut(s)	302, 320, 350, 566
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	4 cut(s)	118, 357, 778, 896
Bse3DI	GCAATG	1 cut(s)	619
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	118, 357, 778, 896
BseGI	GGATG	2 cut(s)	232, 740
BseJI	GATNNNNATC	1 cut(s)	639
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	5 cut(s)	122, 327, 516, 763, 894
BseRI	GAGGAG	4 cut(s)	67, 231, 234, 764
BseXI	GCAGC	6 cut(s)	361, 385, 861, 889, 892, 919
BseYI	CCCAGC	2 cut(s)	563, 711
BsgI	GTGCAG	1 cut(s)	868
BshFI	GGCC	5 cut(s)	8, 356, 413, 895, 901
BsnI	GGCC	5 cut(s)	8, 356, 413, 895, 901
Bsp19I	CCATGG	2 cut(s)	118, 896
BspANI	GGCC	5 cut(s)	8, 356, 413, 895, 901
BspCNI	CTCAG	5 cut(s)	121, 328, 517, 762, 895
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	4 cut(s)	44, 240, 253, 510
BspQI	GCTCTTC	1 cut(s)	299
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	619
BssECI	CCNNGG	4 cut(s)	118, 357, 778, 896
BssT1I	CCWWGG	4 cut(s)	118, 357, 778, 896
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	156, 629
Bst6I	CTCTTC	3 cut(s)	140, 299, 740
BstAFI	CTTAAG	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	5 cut(s)	108, 336, 525, 749, 903
BstDSI	CCRYGG	2 cut(s)	118, 896
BstF5I	GGATG	2 cut(s)	232, 740
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 849, 907
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	6 cut(s)	361, 385, 861, 889, 892, 919
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	3 cut(s)	49, 245, 799
BstXI	CCANNNNNNTGG	2 cut(s)	125, 433
BstYI	RGATCY	3 cut(s)	49, 245, 799
BsuRI	GGCC	5 cut(s)	8, 356, 413, 895, 901
BtgI	CCRYGG	2 cut(s)	118, 896
BtsCI	GGATG	2 cut(s)	232, 740
BtsIMutI	CAGTG	2 cut(s)	152, 812
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	411
CviAII	CATG	7 cut(s)	31, 44, 119, 194, 212, 853, 897
DdeI	CTNAG	5 cut(s)	108, 336, 525, 749, 903
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	2 cut(s)	354, 893
Eam1104I	CTCTTC	3 cut(s)	140, 299, 740
EarI	CTCTTC	3 cut(s)	140, 299, 740
Eco130I	CCWWGG	4 cut(s)	118, 357, 778, 896
Eco57I	CTGAAG	3 cut(s)	482, 503, 788
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	4 cut(s)	118, 357, 778, 896
ErhI	CCWWGG	4 cut(s)	118, 357, 778, 896
FaeI	CATG	7 cut(s)	34, 47, 122, 197, 215, 856, 900
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	7 cut(s)	30, 43, 118, 193, 211, 852, 896
FauNDI	CATATG	1 cut(s)	392
FbaI	TGATCA	3 cut(s)	595, 820, 868
Fnu4HI	GCNGC	6 cut(s)	350, 374, 850, 878, 881, 908
FokI	GGATG	2 cut(s)	239, 727
Fsp4HI	GCNGC	6 cut(s)	350, 374, 850, 878, 881, 908
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	6 cut(s)	350, 374, 850, 878, 881, 908
GsaI	CCCAGC	2 cut(s)	567, 715
HaeIII	GGCC	5 cut(s)	8, 356, 413, 895, 901
Hin1II	CATG	7 cut(s)	34, 47, 122, 197, 215, 856, 900
HindIII	AAGCTT	3 cut(s)	326, 515, 841
HinfI	GANTC	4 cut(s)	277, 295, 551, 829
HphI	GGTGA	2 cut(s)	269, 690
Hpy188I	TCNGA	5 cut(s)	238, 402, 634, 752, 799
HpyAV	CCTTC	2 cut(s)	19, 101
HpyCH4III	ACNGT	2 cut(s)	156, 629
HpyCH4V	TGCA	5 cut(s)	211, 349, 373, 473, 849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 849, 907
HpyF3I	CTNAG	5 cut(s)	108, 336, 525, 749, 903
Hsp92II	CATG	7 cut(s)	34, 47, 122, 197, 215, 856, 900
Ksp22I	TGATCA	3 cut(s)	595, 820, 868
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	1 cut(s)	609
Lsp1109I	GCAGC	6 cut(s)	361, 385, 861, 889, 892, 919
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	662
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	3 cut(s)	49, 245, 799
MlsI	TGGCCA	2 cut(s)	356, 895
MluCI	AATT	4 cut(s)	70, 431, 706, 864
MluNI	TGGCCA	2 cut(s)	356, 895
MlyI	GAGTC	1 cut(s)	289
Mox20I	TGGCCA	2 cut(s)	356, 895
MscI	TGGCCA	2 cut(s)	356, 895
MseI	TTAA	4 cut(s)	291, 477, 570, 922
MslI	CAYNNNNRTG	3 cut(s)	117, 123, 192
Msp20I	TGGCCA	2 cut(s)	356, 895
MspA1I	CMGCKG	1 cut(s)	352
MspCI	CTTAAG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	479, 849, 907
NcoI	CCATGG	2 cut(s)	118, 896
NdeI	CATATG	1 cut(s)	392
NlaIII	CATG	7 cut(s)	34, 47, 122, 197, 215, 856, 900
NlaIV	GGNNCC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	277, 551, 829
PkrI	GCNGC	6 cut(s)	351, 375, 851, 879, 882, 909
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	2 cut(s)	563, 711
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	375
PsuI	RGATCY	3 cut(s)	49, 245, 799
PvuII	CAGCTG	1 cut(s)	352
RseI	CAYNNNNRTG	3 cut(s)	117, 123, 192
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	291, 477, 570, 922
SatI	GCNGC	6 cut(s)	350, 374, 850, 878, 881, 908
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	3 cut(s)	117, 123, 192
SmlI	CTYRAG	5 cut(s)	281, 299, 329, 476, 581
SmoI	CTYRAG	5 cut(s)	281, 299, 329, 476, 581
Sse9I	AATT	4 cut(s)	70, 431, 706, 864
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	4 cut(s)	118, 357, 778, 896
TaaI	ACNGT	2 cut(s)	156, 629
TasI	AATT	4 cut(s)	70, 431, 706, 864
TfiI	GAWTC	3 cut(s)	277, 551, 829
Tru1I	TTAA	4 cut(s)	291, 477, 570, 922
Tru9I	TTAA	4 cut(s)	291, 477, 570, 922
TscAI	CASTG	2 cut(s)	159, 812
TseI	GCWGC	6 cut(s)	349, 373, 849, 877, 880, 907
TspDTI	ATGAA	8 cut(s)	19, 60, 158, 210, 554, 573, 852, 908
TspRI	CASTG	2 cut(s)	159, 812
Vha464I	CTTAAG	1 cut(s)	476
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.