Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010812

Physical Location & Seq

Genomic Coordinates Reverse (-)

3573145 .. 3575543

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1049000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGATGGCCTTCCCTCCTTGTCACAGTTTCATGTTTCAAACCCATGAAGATCCAGACCTCCACCTTGCTAATTCCTCTTGCCCTCCTCAGCACTTCCATGGTGGTGGAATGCCTTTTATGATGAAGAGATCACTGTCGTTTTCAGGCGTTGAGAACAATAGATGCCACCATCACGACCAAGAAGCGGCGCTGCATGGAGGAGGAGGAGGGGATGATGATTTGTCGGACGACGGATCCCAGATGGGAGAGAAGAAGAAGAGGCTGAATCTTGAGCAGGTCAAGACTCTGGAGAAGAGCTTCGAAATGGGGAACAAGCTAGAACCGGAGAGAAAAATGCAGCTGGCTAAGGCACTCGGTTTGCAGCCGAGACAGATCGCTATATGGTTTCAGAACAGAAGGGCAAGGTGGAAGACAAAGCAGTTGGAGAAAGACTACGATGTTTTGAAGAACAAATTTGATGCCCTTAAGGCTGACAATGATGCCCTTCAGGCTCACAATAAGAAGCTTCAAGCTGAGTTATTGACTCTAAAAAGCAAAGATTCATCAAATGAAGGAGGGTTTAATTTCAAGAAAGAAATTGATCAGGGTTCTTGGAGCAATGGAAGTGAGAACAGTTTTGACCACCACCACCACCACCACCATCTCAACTTAGAAATTTCAAGAACAACGGCAACCACCAGCAGCCCACCTTCTGATTCTCCTCATATGAACGGAAAAAACCTCTTTCCACCGTCCTCCTCCTCCCTCATGTCTGCAAGCACAACCCAACTCCTCCAAGGATCATCGAGGTCAGATCTTCAGTCCCTCAAACTTGATCAGATGATTCAGGACGAAGGATTGTGCAGCATGTTCAATGGCATTGATCAAGAGCAGCAAGGGTTTTGGCCATGGCCTGAGCAGCAGCATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

305

Amino Acids

34.41

Weight (kDa)

6.36

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	84 - 137	3.7e-16	Homeodomain
HALZ	PF02183	139 - 179	2.5e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01220 AT5G15150
fragaria_vesca	FvH4_6g49000
malus_domestica	MD09G1049000.v1.1 MD17G1049000.v1.1
prunus_persica	Prupe.3G269900_v2.0.a1 Prupe.3G269900_v2.0.a1
pyrus_communis	pycom111g03990 pycom111g04000 pycom17g04400
rosa_chinensis	RchiOBHm_Chr2g0168851
rosa_laevigata	RLG00000021811
rosa_multiflora	Rmu_ssc0000393.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082630
rosa_rugosa	Rorug02G0535700
rosa_samantha	Rh2AG606700 Rh2BG619500 Rh2CG588100 Rh2DG630100
rosa_wichuraiana	Rw2G050300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	4 cut(s)	44, 228, 241, 787
AcoI	YGGCCR	1 cut(s)	884
AcsI	RAATTY	2 cut(s)	452, 654
AcuI	CTGAAG	2 cut(s)	470, 782
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	6 cut(s)	38, 445, 509, 568, 660, 853
AluBI	AGCT	5 cut(s)	297, 316, 340, 505, 512
AluI	AGCT	5 cut(s)	297, 316, 340, 505, 512
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	4 cut(s)	44, 228, 241, 787
AoxI	GGCC	3 cut(s)	6, 884, 890
ApeKI	GCWGC	8 cut(s)	190, 337, 361, 681, 843, 871, 898, 901
ApoI	RAATTY	2 cut(s)	452, 654
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	886
BamHI	GGATCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	7 cut(s)	177, 349, 373, 693, 855, 883, 910
BccI	CCATC	3 cut(s)	177, 235, 648
BceAI	ACGGC	1 cut(s)	684
BclI	TGATCA	3 cut(s)	580, 814, 862
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	265
BglI	GCCNNNNNGGC	2 cut(s)	467, 488
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	9 cut(s)	186, 191, 338, 362, 682, 844, 872, 899, 902
BlsI	GCNGC	9 cut(s)	187, 192, 339, 363, 683, 845, 873, 900, 903
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	3 cut(s)	152, 448, 469
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	3 cut(s)	87, 345, 894
Bpu14I	TTCGAA	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	97, 775, 887
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	604
BseDI	CCNNGG	3 cut(s)	97, 775, 887
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	3 cut(s)	101, 504, 885
BseRI	GAGGAG	8 cut(s)	75, 213, 216, 219, 690, 727, 730, 761
BseXI	GCAGC	7 cut(s)	177, 349, 373, 693, 855, 883, 910
BsgI	GTGCAG	1 cut(s)	862
BshFI	GGCC	3 cut(s)	8, 886, 892
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	3 cut(s)	8, 886, 892
Bsp119I	TTCGAA	1 cut(s)	300
Bsp143I	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
Bsp19I	CCATGG	2 cut(s)	97, 887
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	3 cut(s)	8, 886, 892
BspCNI	CTCAG	3 cut(s)	100, 505, 886
BspLI	GGNNCC	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	4 cut(s)	44, 228, 241, 787
BspQI	GCTCTTC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	604
BssECI	CCNNGG	3 cut(s)	97, 775, 887
BssMI	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
BssT1I	CCWWGG	3 cut(s)	97, 775, 887
Bst4CI	ACNGT	4 cut(s)	26, 135, 614, 732
Bst6I	CTCTTC	3 cut(s)	119, 251, 287
BstAFI	CTTAAG	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	342, 757
BstDEI	CTNAG	5 cut(s)	87, 345, 513, 649, 894
BstDSI	CCRYGG	2 cut(s)	97, 887
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	9 cut(s)	52, 131, 236, 375, 583, 782, 796, 817, 865
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 488, 898
BstNSI	RCATGY	1 cut(s)	850
BstV1I	GCAGC	7 cut(s)	177, 349, 373, 693, 855, 883, 910
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	3 cut(s)	49, 233, 793
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	3 cut(s)	49, 233, 793
BsuRI	GGCC	3 cut(s)	8, 886, 892
BtgI	CCRYGG	2 cut(s)	97, 887
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	342, 757
CfoI	GCGC	1 cut(s)	190
CviAII	CATG	7 cut(s)	31, 44, 98, 194, 748, 847, 888
DdeI	CTNAG	5 cut(s)	87, 345, 513, 649, 894
DpnI	GATC	9 cut(s)	51, 130, 235, 374, 582, 781, 795, 816, 864
DpnII	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
EaeI	YGGCCR	1 cut(s)	884
Eam1104I	CTCTTC	3 cut(s)	119, 251, 287
EarI	CTCTTC	3 cut(s)	119, 251, 287
Eco130I	CCWWGG	3 cut(s)	97, 775, 887
Eco57I	CTGAAG	2 cut(s)	470, 782
EcoT14I	CCWWGG	3 cut(s)	97, 775, 887
ErhI	CCWWGG	3 cut(s)	97, 775, 887
FaeI	CATG	7 cut(s)	34, 47, 101, 197, 751, 850, 891
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	7 cut(s)	30, 43, 97, 193, 747, 846, 887
FauNDI	CATATG	1 cut(s)	705
FbaI	TGATCA	3 cut(s)	580, 814, 862
Fnu4HI	GCNGC	9 cut(s)	186, 191, 338, 362, 682, 844, 872, 899, 902
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	9 cut(s)	186, 191, 338, 362, 682, 844, 872, 899, 902
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	9 cut(s)	186, 191, 338, 362, 682, 844, 872, 899, 902
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	8, 886, 892
HapII	CCGG	1 cut(s)	323
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	7 cut(s)	34, 47, 101, 197, 751, 850, 891
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	6 cut(s)	265, 283, 523, 539, 695, 823
HpaII	CCGG	1 cut(s)	323
Hpy188I	TCNGA	5 cut(s)	226, 390, 694, 793, 819
Hpy188III	TCNNGA	9 cut(s)	53, 173, 269, 280, 287, 568, 660, 827, 866
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	6 cut(s)	19, 390, 494, 545, 699, 827
HpyCH4III	ACNGT	4 cut(s)	26, 135, 614, 732
HpyCH4V	TGCA	5 cut(s)	193, 337, 361, 755, 843
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 488, 898
HpyF3I	CTNAG	5 cut(s)	87, 345, 513, 649, 894
Hsp92II	CATG	7 cut(s)	34, 47, 101, 197, 751, 850, 891
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	3 cut(s)	580, 814, 862
Kzo9I	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	7 cut(s)	177, 349, 373, 693, 855, 883, 910
LweI	GCATC	3 cut(s)	152, 448, 469
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	9 cut(s)	51, 130, 235, 374, 582, 781, 795, 816, 864
MboI	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
MboII	GAAGA	9 cut(s)	59, 136, 262, 265, 268, 304, 421, 457, 788
MflI	RGATCY	3 cut(s)	49, 233, 793
MlsI	TGGCCA	1 cut(s)	886
MluCI	AATT	5 cut(s)	70, 452, 562, 576, 654
MluNI	TGGCCA	1 cut(s)	886
MlyI	GAGTC	2 cut(s)	277, 517
MmeI	TCCRAC	2 cut(s)	204, 402
Mox20I	TGGCCA	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	886
MseI	TTAA	3 cut(s)	465, 561, 913
MslI	CAYNNNNRTG	2 cut(s)	96, 102
Msp20I	TGGCCA	1 cut(s)	886
MspA1I	CMGCKG	1 cut(s)	340
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	467, 488, 898
NcoI	CCATGG	2 cut(s)	97, 887
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
NlaIII	CATG	7 cut(s)	34, 47, 101, 197, 751, 850, 891
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	850
NspV	TTCGAA	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	287
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	265, 539, 695, 823
PkrI	GCNGC	9 cut(s)	187, 192, 339, 363, 683, 845, 873, 900, 903
PleI	GAGTC	2 cut(s)	277, 517
PpsI	GAGTC	2 cut(s)	277, 517
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	49, 233, 793
PvuII	CAGCTG	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	96, 102
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	465, 561, 913
SatI	GCNGC	9 cut(s)	186, 191, 338, 362, 682, 844, 872, 899, 902
Sau3AI	GATC	9 cut(s)	49, 128, 233, 372, 580, 779, 793, 814, 862
SchI	GAGTC	2 cut(s)	277, 517
SfaNI	GCATC	3 cut(s)	152, 448, 469
SfuI	TTCGAA	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	96, 102
SmlI	CTYRAG	2 cut(s)	269, 464
SmoI	CTYRAG	2 cut(s)	269, 464
Sse9I	AATT	5 cut(s)	70, 452, 562, 576, 654
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	3 cut(s)	97, 775, 887
TaaI	ACNGT	4 cut(s)	26, 135, 614, 732
TaqI	TCGA	2 cut(s)	300, 785
TasI	AATT	5 cut(s)	70, 452, 562, 576, 654
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	265, 539, 695, 823
Tru1I	TTAA	3 cut(s)	465, 561, 913
Tru9I	TTAA	3 cut(s)	465, 561, 913
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	8 cut(s)	190, 337, 361, 681, 843, 871, 898, 901
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	7 cut(s)	19, 60, 137, 531, 564, 722, 899
TspGWI	ACGGA	2 cut(s)	246, 726
TspRI	CASTG	1 cut(s)	138
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	2 cut(s)	452, 654
XceI	RCATGY	1 cut(s)	850
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.