AT3G01290

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005232
Physical Location & Seq
Reverse (-)
87684 .. 89593
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01290.1

Sequence Viewer

Length: 858 bp
ATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCGGTCAAGGAGAGATTTGGCAAATTCCAAAAAGTACTTAATCCAGGTCTCCAATTTGTTCCATGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATGACTGCTTATGGTTACGAAATCCTTCAAACCCTAATTATCGACATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAGTACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGACAGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCGAAGGATGTGTTGGACATGGTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAATCCTCTGCGGTGTTTATCCCTCACGGTCCAGGCGCCGTCTCTGACGTGGCAGCGCAGATTCGAAATGGATTATTACAGGCCAACAATGCCTCCTAA

Protein Analysis

285

Amino Acids

31.32

Weight (kDa)

5.67

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 10 - 182 3e-32 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 686
AccB1I GGYRCC 1 cut(s) 794
AccII CGCG 1 cut(s) 500
AciI CCGC 4 cut(s) 47, 498, 500, 770
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 2 cut(s) 683, 795
AfaI GTAC 4 cut(s) 81, 136, 590, 725
AfiI CCNNNNNNNGG 1 cut(s) 504
AgsI TTSAA 1 cut(s) 434
AhdI GACNNNNNGTC 1 cut(s) 147
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 3 cut(s) 88, 676, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 3 cut(s) 239, 334, 394
AluI AGCT 3 cut(s) 239, 334, 394
Alw26I GTCTC 4 cut(s) 98, 613, 639, 805
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 1 cut(s) 840
ApeKI GCWGC 2 cut(s) 518, 812
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 8 cut(s) 182, 214, 285, 317, 335, 367, 578, 610
Asp700I GAANNNNTTC 2 cut(s) 11, 429
AspLEI GCGC 2 cut(s) 797, 817
AspS9I GGNCC 1 cut(s) 788
AsuHPI GGTGA 3 cut(s) 131, 584, 721
AsuII TTCGAA 1 cut(s) 823
AvaII GGWCC 1 cut(s) 788
BanI GGYRCC 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 530, 824
BceAI ACGGC 1 cut(s) 782
BciT130I CCWGG 3 cut(s) 90, 678, 792
BclI TGATCA 2 cut(s) 312, 460
BcoDI GTCTC 4 cut(s) 98, 613, 639, 805
BfaI CTAG 2 cut(s) 395, 656
BfoI RGCGCY 1 cut(s) 798
BisI GCNGC 4 cut(s) 498, 501, 519, 813
BlsI GCNGC 4 cut(s) 499, 502, 520, 814
BmcAI AGTACT 2 cut(s) 81, 725
Bme1390I CCNGG 3 cut(s) 90, 678, 792
Bme18I GGWCC 1 cut(s) 788
BmeRI GACNNNNNGTC 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 788
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 3 cut(s) 90, 678, 792
BmsI GCATC 2 cut(s) 224, 244
BpiI GAAGAC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 823
BsaHI GRCGYC 2 cut(s) 683, 795
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 107, 498, 677
BsaXI ACNNNNNCTCC 1 cut(s) 836
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 3 cut(s) 90, 678, 792
BseDI CCNNGG 3 cut(s) 107, 498, 677
BseGI GGATG 3 cut(s) 215, 513, 700
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMII CTCAG 4 cut(s) 283, 531, 632, 734
BseXI GCAGC 2 cut(s) 530, 824
Bsh1236I CGCG 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 630
BshFI GGCC 1 cut(s) 842
BshNI GGYRCC 1 cut(s) 794
BsiEI CGRYCG 1 cut(s) 630
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 2 cut(s) 612, 694
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 4 cut(s) 98, 613, 639, 805
BsmBI CGTCTC 1 cut(s) 805
BsmFI GGGAC 2 cut(s) 612, 694
BsnI GGCC 1 cut(s) 842
Bso31I GGTCTC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 823
Bsp143I GATC 4 cut(s) 312, 460, 555, 627
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 4 cut(s) 47, 498, 500, 770
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 4 cut(s) 282, 532, 633, 733
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 796
BspQI GCTCTTC 1 cut(s) 384
BspT104I TTCGAA 1 cut(s) 823
BspT107I GGYRCC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 107, 498, 677
BssMI GATC 4 cut(s) 312, 460, 555, 627
BssNI GRCGYC 2 cut(s) 683, 795
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 3 cut(s) 90, 678, 792
Bst4CI ACNGT 4 cut(s) 208, 638, 650, 788
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 2 cut(s) 683, 795
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 823
BstC8I GCNNGC 2 cut(s) 23, 523
BstDEI CTNAG 5 cut(s) 235, 269, 540, 641, 720
BstDSI CCRYGG 2 cut(s) 107, 498
BstF5I GGATG 3 cut(s) 215, 513, 700
BstFNI CGCG 1 cut(s) 500
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 2 cut(s) 797, 817
BstKTI GATC 4 cut(s) 315, 463, 558, 630
BstMAI GTCTC 4 cut(s) 98, 613, 639, 805
BstMBI GATC 4 cut(s) 312, 460, 555, 627
BstMCI CGRYCG 1 cut(s) 630
BstMWI GCNNNNNNNGC 5 cut(s) 31, 245, 254, 410, 848
BstNI CCWGG 3 cut(s) 90, 678, 792
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 88, 676, 790
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 530, 824
BstV2I GAAGAC 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 382
BsuRI GGCC 1 cut(s) 842
BtgI CCRYGG 2 cut(s) 107, 498
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 3 cut(s) 215, 513, 700
BtsIMutI CAGTG 4 cut(s) 137, 176, 213, 655
Cac8I GCNNGC 2 cut(s) 23, 523
CaiI CAGNNNCTG 1 cut(s) 539
CfoI GCGC 2 cut(s) 797, 817
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 788
Cfr42I CCGCGG 1 cut(s) 501
Csp6I GTAC 4 cut(s) 80, 135, 589, 724
CviAII CATG 5 cut(s) 108, 321, 406, 481, 706
CviJI RGCY 8 cut(s) 239, 296, 334, 394, 404, 457, 539, 842
CviKI_1 RGCY 8 cut(s) 239, 296, 334, 394, 404, 457, 539, 842
CviQI GTAC 4 cut(s) 80, 135, 589, 724
DdeI CTNAG 5 cut(s) 235, 269, 540, 641, 720
DinI GGCGCC 1 cut(s) 796
DpnI GATC 4 cut(s) 314, 462, 557, 629
DpnII GATC 4 cut(s) 312, 460, 555, 627
DriI GACNNNNNGTC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 98
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 137
EcoRII CCWGG 3 cut(s) 88, 676, 790
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 107
EgeI GGCGCC 1 cut(s) 796
EheI GGCGCC 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 805
FaeI CATG 5 cut(s) 111, 324, 409, 484, 709
FaiI YATR 7 cut(s) 109, 221, 322, 407, 417, 482, 707
FalI AAGNNNNNCTT 4 cut(s) 241, 273, 323, 355
FaqI GGGAC 2 cut(s) 612, 694
FatI CATG 5 cut(s) 107, 320, 405, 480, 705
FbaI TGATCA 2 cut(s) 312, 460
Fnu4HI GCNGC 4 cut(s) 498, 501, 519, 813
FokI GGATG 3 cut(s) 202, 520, 707
Fsp4HI GCNGC 4 cut(s) 498, 501, 519, 813
FspBI CTAG 2 cut(s) 395, 656
GlaI GCGC 2 cut(s) 796, 816
GluI GCNGC 4 cut(s) 498, 501, 519, 813
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 1 cut(s) 842
HapII CCGG 1 cut(s) 132
HhaI GCGC 2 cut(s) 797, 817
Hin1I GRCGYC 2 cut(s) 683, 795
Hin1II CATG 5 cut(s) 111, 324, 409, 484, 709
Hin6I GCGC 2 cut(s) 795, 815
HinP1I GCGC 2 cut(s) 795, 815
HinfI GANTC 8 cut(s) 7, 231, 267, 581, 600, 606, 718, 820
HpaII CCGG 1 cut(s) 132
HphI GGTGA 3 cut(s) 131, 584, 721
Hpy166II GTNNAC 2 cut(s) 137, 634
Hpy188I TCNGA 7 cut(s) 40, 317, 555, 605, 642, 749, 805
Hpy188III TCNNGA 1 cut(s) 597
Hpy8I GTNNAC 2 cut(s) 137, 634
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 155, 440, 685
HpyCH4III ACNGT 4 cut(s) 208, 638, 650, 788
HpyCH4IV ACGT 6 cut(s) 126, 300, 475, 672, 683, 807
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 245, 254, 410, 848
HpyF3I CTNAG 5 cut(s) 235, 269, 540, 641, 720
HpySE526I ACGT 6 cut(s) 126, 300, 475, 672, 683, 807
Hsp92I GRCGYC 2 cut(s) 683, 795
Hsp92II CATG 5 cut(s) 111, 324, 409, 484, 709
HspAI GCGC 2 cut(s) 795, 815
KasI GGCGCC 1 cut(s) 794
Ksp22I TGATCA 2 cut(s) 312, 460
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 4 cut(s) 312, 460, 555, 627
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 749
Lsp1109I GCAGC 2 cut(s) 530, 824
LweI GCATC 2 cut(s) 224, 244
MaeI CTAG 2 cut(s) 395, 656
MaeII ACGT 6 cut(s) 126, 300, 475, 672, 683, 807
MaeIII GTNAC 2 cut(s) 202, 419
MalI GATC 4 cut(s) 314, 462, 557, 629
MboI GATC 4 cut(s) 312, 460, 555, 627
MboII GAAGA 4 cut(s) 143, 373, 398, 401
MluCI AATT 4 cut(s) 68, 98, 369, 441
Mly113I GGCGCC 1 cut(s) 795
MlyI GAGTC 5 cut(s) 240, 261, 590, 594, 712
MmeI TCCRAC 2 cut(s) 302, 681
MnlI CCTC 5 cut(s) 498, 529, 562, 775, 792
MroXI GAANNNNTTC 2 cut(s) 11, 429
MseI TTAA 2 cut(s) 84, 471
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 3 cut(s) 90, 678, 792
MvaI CCWGG 3 cut(s) 90, 678, 792
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 5 cut(s) 31, 245, 254, 410, 848
NarI GGCGCC 1 cut(s) 795
NcoI CCATGG 1 cut(s) 107
NdeII GATC 4 cut(s) 312, 460, 555, 627
NlaIII CATG 5 cut(s) 111, 324, 409, 484, 709
NlaIV GGNNCC 1 cut(s) 796
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 351, 669
PdmI GAANNNNTTC 2 cut(s) 11, 429
PfeI GAWTC 3 cut(s) 7, 606, 820
PkrI GCNGC 4 cut(s) 499, 502, 520, 814
Ple19I CGATCG 1 cut(s) 630
PleI GAGTC 5 cut(s) 239, 261, 589, 594, 712
PluTI GGCGCC 1 cut(s) 798
PpsI GAGTC 5 cut(s) 239, 261, 589, 594, 712
Psp6I CCWGG 3 cut(s) 88, 676, 790
PspGI CCWGG 3 cut(s) 88, 676, 790
PspN4I GGNNCC 1 cut(s) 796
PspPI GGNCC 1 cut(s) 788
PstNI CAGNNNCTG 1 cut(s) 539
PvuI CGATCG 1 cut(s) 630
RsaI GTAC 4 cut(s) 81, 136, 590, 725
RsaNI GTAC 4 cut(s) 80, 135, 589, 724
RseI CAYNNNNRTG 1 cut(s) 710
SacII CCGCGG 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 84, 471
SatI GCNGC 4 cut(s) 498, 501, 519, 813
Sau3AI GATC 4 cut(s) 312, 460, 555, 627
Sau96I GGNCC 1 cut(s) 788
ScaI AGTACT 2 cut(s) 81, 725
SchI GAGTC 5 cut(s) 240, 261, 590, 594, 712
ScrFI CCNGG 3 cut(s) 90, 678, 792
SfaNI GCATC 2 cut(s) 224, 244
SfoI GGCGCC 1 cut(s) 796
Sfr303I CCGCGG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 823
SgrBI CCGCGG 1 cut(s) 501
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 1 cut(s) 710
Sse9I AATT 4 cut(s) 68, 98, 369, 441
SsiI CCGC 4 cut(s) 47, 498, 500, 770
SspDI GGCGCC 1 cut(s) 794
SspMI CTAG 2 cut(s) 395, 656
StyD4I CCNGG 3 cut(s) 88, 676, 790
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 4 cut(s) 208, 638, 650, 788
TaiI ACGT 6 cut(s) 129, 303, 478, 675, 686, 810
TaqI TCGA 4 cut(s) 162, 354, 447, 823
TasI AATT 4 cut(s) 68, 98, 369, 441
TatI WGTACW 2 cut(s) 79, 723
TauI GCSGC 2 cut(s) 500, 503
TfiI GAWTC 3 cut(s) 7, 606, 820
Tru1I TTAA 2 cut(s) 84, 471
Tru9I TTAA 2 cut(s) 84, 471
TscAI CASTG 4 cut(s) 144, 176, 213, 655
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 518, 812
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 381, 497
TspRI CASTG 4 cut(s) 144, 176, 213, 655
VpaK11BI GGWCC 1 cut(s) 788
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 324
XmnI GAANNNNTTC 2 cut(s) 11, 429
XspI CTAG 2 cut(s) 395, 656
ZraI GACGTC 1 cut(s) 684
ZrmI AGTACT 2 cut(s) 81, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.