Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005232

Physical Location & Seq

Genomic Coordinates Reverse (-)

8745871 .. 8749913

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGTAATCTACTATGTTGTGTACAAGTTGATCAATCCACAGTCGCTATGAGGGAACAATTTGGTAAGTTTGTGGACGTAATGGAGCCAGGATGCCATTGCATGCCTTGGTTTCTTGGGCATCAGGTTGCTGGTCATCTCTCTCTGCGTTTGCAGCAGTTGGATGTGCGGTGTGAGACCAAGACAAAGGACAATGTCTTTGTCAATGTTGTTGCATCAATTCAATATCGTGCTCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTCAGCAACACTAGGTCTCAAATCCAGGCCTATGTGTTTGATGTGATTAGAGCCAGCGTTCCTAAGCTCCTTCTGGATGATGCTTTTGAGCAAAAGAATGAAATTGCAAAAGCTGTGGAAGATGAGTTGGAGAAGGCCATGTCTGCTTATGGTTATGAGATTGTACAAACTCTCATTGTTGACATAGAACCAGATGAGCATGTGAAACGTGCAATGAATGAAATCAATGCTGCTGCAAGAATGAGGGTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATTTTGCAAATTAAACGAGCTGAGGGTGAGGCTGAGTCTAAGTATCTGTCCGGGCTTGGTATAGCTCGTCAACGTCAAGCAATTGTAGATGGTTTGAGAGACAGTGTGCTGGGCTTTGCTGTTAATGTTCCAGGGACCACCGCGAAGGATGTCATGGACATGGTTCTTGTGACTCAGTATTTTGACACAATGAAGGAAATTGGTGCCAGCTCTAAATCCTCTGCTGTGTTCATTCCCCATGGACCTGGTGCCGTCCGCGATGTAGCTTCTCAGATCCGTGATGGACTTCTTCAGGGTTCTCAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

285

Amino Acids

31.36

Weight (kDa)

5.49

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	9 - 182	1.4e-27	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01290
fragaria_vesca	FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490
malus_domestica	MD06G1188200.v1.1 MD14G1194700.v1.1
prunus_persica	Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1
pyrus_communis	pycom14g16170
rosa_chinensis	RchiOBHm_Chr7g0180601
rosa_laevigata	RLG00000005251
rosa_multiflora	Rmu_co8451221.1_g000001 Rmu_sc0005690.1_g000020 Rmu_sc0023372.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272750
rosa_rugosa	Rorug06G0434100 Rorug06G0434200 Rorug06G0434300 Rorug06G0434400 Rorug06G0434500
rosa_samantha	Rh7AG035500 Rh7BG035400 Rh7DG035700
rosa_wichuraiana	Rw7G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	749, 794
AccII	CGCG	2 cut(s)	689, 804
AciI	CCGC	3 cut(s)	169, 687, 802
AclWI	GGATC	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	2 cut(s)	24, 432
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	4 cut(s)	88, 291, 676, 790
AluBI	AGCT	7 cut(s)	334, 380, 521, 566, 611, 756, 812
AluI	AGCT	7 cut(s)	334, 380, 521, 566, 611, 756, 812
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	3 cut(s)	170, 288, 639
AlwI	GGATC	1 cut(s)	814
AoxI	GGCC	2 cut(s)	294, 402
ApeKI	GCWGC	4 cut(s)	154, 497, 500, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspS9I	GGNCC	2 cut(s)	681, 788
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	2 cut(s)	681, 788
BanI	GGYRCC	2 cut(s)	749, 794
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	166, 484, 487, 530
BccI	CCATC	2 cut(s)	629, 821
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	4 cut(s)	90, 293, 678, 792
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	3 cut(s)	170, 288, 639
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	4 cut(s)	155, 498, 501, 519
BlsI	GCNGC	4 cut(s)	156, 499, 502, 520
Bme1390I	CCNGG	5 cut(s)	90, 293, 598, 678, 792
Bme18I	GGWCC	2 cut(s)	681, 788
BmgT120I	GGNCC	2 cut(s)	681, 788
BmiI	GGNNCC	4 cut(s)	87, 682, 751, 796
BmrFI	CCNGG	5 cut(s)	90, 293, 598, 678, 792
BmsI	GCATC	5 cut(s)	83, 130, 224, 244, 337
Bpu10I	CCTNAGC	2 cut(s)	330, 567
BpuMI	CCSGG	1 cut(s)	598
BsaI	GGTCTC	2 cut(s)	170, 288
BsaJI	CCNNGG	3 cut(s)	107, 677, 784
Bse3DI	GCAATG	2 cut(s)	97, 486
BseBI	CCWGG	4 cut(s)	90, 293, 678, 792
BseDI	CCNNGG	3 cut(s)	107, 677, 784
BseGI	GGATG	4 cut(s)	98, 169, 349, 700
BseMI	GCAATG	2 cut(s)	97, 486
BseMII	CTCAG	5 cut(s)	283, 558, 570, 734, 830
BseXI	GCAGC	4 cut(s)	166, 484, 487, 530
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	2 cut(s)	689, 804
BshFI	GGCC	2 cut(s)	296, 404
BshNI	GGYRCC	2 cut(s)	749, 794
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	694
BsmAI	GTCTC	3 cut(s)	170, 288, 639
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	296, 404
Bso31I	GGTCTC	2 cut(s)	170, 288
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1407I	TGTACA	2 cut(s)	22, 430
Bsp143I	GATC	2 cut(s)	31, 819
Bsp19I	CCATGG	1 cut(s)	784
BspACI	CCGC	3 cut(s)	169, 687, 802
BspANI	GGCC	2 cut(s)	296, 404
BspCNI	CTCAG	5 cut(s)	282, 559, 571, 733, 829
BspFNI	CGCG	2 cut(s)	689, 804
BspLI	GGNNCC	4 cut(s)	87, 682, 751, 796
BspPI	GGATC	1 cut(s)	814
BspT107I	GGYRCC	2 cut(s)	749, 794
BspTNI	GGTCTC	2 cut(s)	170, 288
BsrDI	GCAATG	2 cut(s)	97, 486
BsrGI	TGTACA	2 cut(s)	22, 430
BssECI	CCNNGG	3 cut(s)	107, 677, 784
BssMI	GATC	2 cut(s)	31, 819
BssT1I	CCWWGG	2 cut(s)	107, 784
Bst2UI	CCWGG	4 cut(s)	90, 293, 678, 792
Bst4CI	ACNGT	3 cut(s)	43, 650, 852
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	2 cut(s)	22, 430
BstC8I	GCNNGC	3 cut(s)	104, 322, 754
BstDEI	CTNAG	7 cut(s)	269, 330, 567, 579, 585, 720, 816
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	4 cut(s)	98, 169, 349, 700
BstFNI	CGCG	2 cut(s)	689, 804
BstKTI	GATC	2 cut(s)	34, 822
BstMAI	GTCTC	3 cut(s)	170, 288, 639
BstMBI	GATC	2 cut(s)	31, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 245, 254, 410
BstNI	CCWGG	4 cut(s)	90, 293, 678, 792
BstNSI	RCATGY	2 cut(s)	106, 470
BstSCI	CCNGG	5 cut(s)	88, 291, 596, 676, 790
BstUI	CGCG	2 cut(s)	689, 804
BstV1I	GCAGC	4 cut(s)	166, 484, 487, 530
BstX2I	RGATCY	1 cut(s)	819
BstXI	CCANNNNNNTGG	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	819
BsuRI	GGCC	2 cut(s)	296, 404
BtgI	CCRYGG	1 cut(s)	784
BtgZI	GCGATG	1 cut(s)	819
BtsCI	GGATG	4 cut(s)	98, 169, 349, 700
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	3 cut(s)	104, 322, 754
Cfr13I	GGNCC	2 cut(s)	681, 788
CsiI	ACCWGGT	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	23, 431
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	6 cut(s)	103, 406, 467, 700, 706, 785
CviQI	GTAC	2 cut(s)	23, 431
DdeI	CTNAG	7 cut(s)	269, 330, 567, 579, 585, 720, 816
DpnI	GATC	2 cut(s)	33, 821
DpnII	GATC	2 cut(s)	31, 819
Eco130I	CCWWGG	2 cut(s)	107, 784
Eco147I	AGGCCT	1 cut(s)	296
Eco31I	GGTCTC	2 cut(s)	170, 288
Eco47I	GGWCC	2 cut(s)	681, 788
Eco57I	CTGAAG	1 cut(s)	821
EcoRII	CCWGG	4 cut(s)	88, 291, 676, 790
EcoT14I	CCWWGG	2 cut(s)	107, 784
ErhI	CCWWGG	2 cut(s)	107, 784
FaeI	CATG	6 cut(s)	106, 409, 470, 703, 709, 788
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	6 cut(s)	102, 405, 466, 699, 705, 784
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	155, 498, 501, 519
FokI	GGATG	4 cut(s)	105, 176, 356, 707
Fsp4HI	GCNGC	4 cut(s)	155, 498, 501, 519
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	4 cut(s)	155, 498, 501, 519
GsaI	CCCAGC	1 cut(s)	659
HaeIII	GGCC	2 cut(s)	296, 404
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	6 cut(s)	106, 409, 470, 703, 709, 788
HincII	GTYRAC	2 cut(s)	448, 617
HindII	GTYRAC	2 cut(s)	448, 617
HinfI	GANTC	2 cut(s)	581, 718
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	4 cut(s)	23, 76, 448, 617
Hpy188I	TCNGA	1 cut(s)	819
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	4 cut(s)	23, 76, 448, 617
HpyAV	CCTTC	5 cut(s)	347, 394, 523, 685, 733
HpyCH4III	ACNGT	3 cut(s)	43, 650, 852
HpyCH4IV	ACGT	3 cut(s)	78, 475, 619
HpyCH4V	TGCA	7 cut(s)	102, 154, 215, 374, 479, 503, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 245, 254, 410
HpyF3I	CTNAG	7 cut(s)	269, 330, 567, 579, 585, 720, 816
HpySE526I	ACGT	3 cut(s)	78, 475, 619
Hsp92II	CATG	6 cut(s)	106, 409, 470, 703, 709, 788
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 819
LmnI	GCTCC	2 cut(s)	85, 339
Lsp1109I	GCAGC	4 cut(s)	166, 484, 487, 530
LweI	GCATC	5 cut(s)	83, 130, 224, 244, 337
MabI	ACCWGGT	1 cut(s)	790
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	3 cut(s)	78, 475, 619
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	2 cut(s)	33, 821
MboI	GATC	2 cut(s)	31, 819
MboII	GAAGA	3 cut(s)	398, 556, 827
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	1 cut(s)	819
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	6 cut(s)	59, 219, 369, 555, 627, 744
MlyI	GAGTC	2 cut(s)	590, 712
MmeI	TCCRAC	2 cut(s)	141, 375
MnlI	CCTC	6 cut(s)	45, 504, 529, 562, 568, 775
MseI	TTAA	2 cut(s)	558, 669
MslI	CAYNNNNRTG	1 cut(s)	704
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	5 cut(s)	90, 293, 598, 678, 792
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	4 cut(s)	90, 293, 678, 792
MvnI	CGCG	2 cut(s)	689, 804
MwoI	GCNNNNNNNGC	4 cut(s)	154, 245, 254, 410
NciI	CCSGG	1 cut(s)	598
NcoI	CCATGG	1 cut(s)	784
NdeII	GATC	2 cut(s)	31, 819
NlaIII	CATG	6 cut(s)	106, 409, 470, 703, 709, 788
NlaIV	GGNNCC	4 cut(s)	87, 682, 751, 796
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	2 cut(s)	106, 470
PaeI	GCATGC	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	156, 499, 502, 520
PleI	GAGTC	2 cut(s)	589, 712
PpsI	GAGTC	2 cut(s)	589, 712
Psp6I	CCWGG	4 cut(s)	88, 291, 676, 790
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	4 cut(s)	88, 291, 676, 790
PspN4I	GGNNCC	4 cut(s)	87, 682, 751, 796
PspPI	GGNCC	2 cut(s)	681, 788
PsuI	RGATCY	1 cut(s)	819
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	24, 432
RsaNI	GTAC	2 cut(s)	23, 431
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	558, 669
SatI	GCNGC	4 cut(s)	155, 498, 501, 519
Sau3AI	GATC	2 cut(s)	31, 819
Sau96I	GGNCC	2 cut(s)	681, 788
SchI	GAGTC	2 cut(s)	590, 712
ScrFI	CCNGG	5 cut(s)	90, 293, 598, 678, 792
SduI	GDGCHC	1 cut(s)	235
SexAI	ACCWGGT	1 cut(s)	790
SfaNI	GCATC	5 cut(s)	83, 130, 224, 244, 337
SinI	GGWCC	2 cut(s)	681, 788
SmiMI	CAYNNNNRTG	1 cut(s)	704
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	6 cut(s)	59, 219, 369, 555, 627, 744
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	169, 687, 802
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	5 cut(s)	88, 291, 596, 676, 790
StyI	CCWWGG	2 cut(s)	107, 784
TaaI	ACNGT	3 cut(s)	43, 650, 852
TaiI	ACGT	3 cut(s)	81, 478, 622
TasI	AATT	6 cut(s)	59, 219, 369, 555, 627, 744
TatI	WGTACW	2 cut(s)	22, 430
Tru1I	TTAA	2 cut(s)	558, 669
Tru9I	TTAA	2 cut(s)	558, 669
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	4 cut(s)	154, 497, 500, 518
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	381, 497, 501, 752, 766
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	1 cut(s)	655
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	681, 788
XceI	RCATGY	2 cut(s)	106, 470
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.