Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005232

Physical Location & Seq

Genomic Coordinates Reverse (-)

56947350 .. 56948755

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGGGCATGGCCAAACTCGTTTCTGCATTGGCAATCTTGCTTAGTGTTTCTACATATGTTAATGGATTCACGGCATCTGGGTTCACCAGAGGTCACGCCACATTTTATGGAGGAAGTGATGCCTCCGGAACTATGGGTGGAGCTTGTGGATATGGCGATCTGTATTCTGCAGGGTATGGGACTAGGACTGCGGCTCTGAGTACTGCTTTGTTCAACGATGGAGGTTCATGTGGGCAATGCTACAGGATCATCTGTGATTATGCAACAGATTCCAAATGGTGCATTAAGGGAGTATCCGTGACTGTGACAGCAACCAACTTTTGTCCTCCTAATTATGATCTTCCCAGCAACAACGGAGGCTGGTGCAACCCGCCTCTTCAGCATTTCGACATGGCTCAGCCCGCTTGGGAGAAGATTGCAATCTACAGAGGTGGCATTGTCCCCGTCTTGTTCCAAAGGGTTCCATGTAAGAAGCATGGAGGCGTCAGGTTCGCCATAAATGGGAGGGACTATTTTGAGCTTGTTCTGATTAGCAATGTGGGAGGAGCAGGATCTATTAAATCTGCCTACGTCAAAGGCTCGAACGCCGGTTGGATGGCAATGTCAAGAAATTGGGGAGCTAATTGGCAGTCCAATGCCTACCTCAATGGCCAATCTCTGTCCTTCAAAGTCACCACCACCGATGGAGAAACTAAACTCTTTACGAACATTGTGCCTTCAAGTTGGAATTTTGGCCAAACCTTCTCCAGTTTAGTACAGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

256

Amino Acids

27.27

Weight (kDa)

8.88

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	64 - 151	2.9e-21	Lytic transglycolase
Expansin_C	PF01357	163 - 240	8e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01290
fragaria_vesca	FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490
malus_domestica	MD06G1188200.v1.1 MD14G1194700.v1.1
prunus_persica	Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1
pyrus_communis	pycom14g16170
rosa_chinensis	RchiOBHm_Chr7g0180601
rosa_laevigata	RLG00000005251
rosa_multiflora	Rmu_co8451221.1_g000001 Rmu_sc0005690.1_g000020 Rmu_sc0023372.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272750
rosa_rugosa	Rorug06G0434100 Rorug06G0434200 Rorug06G0434300 Rorug06G0434400 Rorug06G0434500
rosa_samantha	Rh7AG035500 Rh7BG035400 Rh7DG035700
rosa_wichuraiana	Rw7G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	4 cut(s)	5, 194, 374, 405
AclWI	GGATC	2 cut(s)	257, 562
AcoI	YGGCCR	3 cut(s)	12, 652, 736
AcsI	RAATTY	1 cut(s)	730
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	2 cut(s)	205, 759
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	3 cut(s)	217, 670, 723
AluBI	AGCT	3 cut(s)	146, 523, 623
AluI	AGCT	3 cut(s)	146, 523, 623
AlwI	GGATC	2 cut(s)	257, 562
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	3 cut(s)	12, 652, 736
ApoI	RAATTY	1 cut(s)	730
AsuHPI	GGTGA	2 cut(s)	79, 667
BalI	TGGCCA	3 cut(s)	14, 654, 738
BccI	CCATC	3 cut(s)	215, 592, 680
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciVI	GTATCC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	3 cut(s)	171, 244, 427
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	195
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	2 cut(s)	86, 112
BpmI	CTGGAG	1 cut(s)	733
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	750
Bse3DI	GCAATG	3 cut(s)	245, 544, 609
Bse8I	GATNNNNATC	1 cut(s)	422
BseAI	TCCGGA	1 cut(s)	128
BseGI	GGATG	1 cut(s)	603
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	3 cut(s)	245, 544, 609
BseMII	CTCAG	2 cut(s)	191, 413
BseNI	ACTGG	1 cut(s)	750
BseRI	GAGGAG	1 cut(s)	561
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	3 cut(s)	14, 654, 738
BsiSI	CCGG	2 cut(s)	129, 591
BslFI	GGGAC	3 cut(s)	196, 428, 524
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmFI	GGGAC	3 cut(s)	196, 428, 524
BsnI	GGCC	3 cut(s)	14, 654, 738
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	160, 249, 340, 554
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	4 cut(s)	5, 194, 374, 405
BspANI	GGCC	3 cut(s)	14, 654, 738
BspCNI	CTCAG	2 cut(s)	192, 412
BspEI	TCCGGA	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	2 cut(s)	257, 562
BsrDI	GCAATG	3 cut(s)	245, 544, 609
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	750
BssAI	RCCGGY	1 cut(s)	590
BssMI	GATC	4 cut(s)	160, 249, 340, 554
BssNI	GRCGYC	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	307, 762
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	7, 405
BstDEI	CTNAG	3 cut(s)	44, 200, 399
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	4 cut(s)	163, 252, 343, 557
BstMBI	GATC	4 cut(s)	160, 249, 340, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 382, 404
BstSFI	CTRYAG	3 cut(s)	171, 244, 427
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	14, 654, 738
BtsCI	GGATG	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	7, 405
Cfr10I	RCCGGY	1 cut(s)	590
CseI	GACGC	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	204, 758
CviAII	CATG	5 cut(s)	10, 231, 394, 468, 479
CviQI	GTAC	2 cut(s)	204, 758
DdeI	CTNAG	3 cut(s)	44, 200, 399
DpnI	GATC	4 cut(s)	162, 251, 342, 556
DpnII	GATC	4 cut(s)	160, 249, 340, 554
EaeI	YGGCCR	3 cut(s)	12, 652, 736
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	365
FaeI	CATG	5 cut(s)	13, 234, 397, 471, 482
FaqI	GGGAC	3 cut(s)	196, 428, 524
FatI	CATG	5 cut(s)	9, 230, 393, 467, 478
FauI	CCCGC	2 cut(s)	381, 412
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	610
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	733
HaeIII	GGCC	3 cut(s)	14, 654, 738
HapII	CCGG	2 cut(s)	129, 591
HgaI	GACGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	5 cut(s)	13, 234, 397, 471, 482
HinfI	GANTC	2 cut(s)	69, 272
HpaII	CCGG	2 cut(s)	129, 591
HphI	GGTGA	2 cut(s)	79, 667
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	201, 531
Hpy188III	TCNNGA	2 cut(s)	129, 609
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	3 cut(s)	676, 729, 754
HpyCH4III	ACNGT	2 cut(s)	307, 762
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	6 cut(s)	29, 173, 266, 285, 369, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 382, 404
HpyF3I	CTNAG	3 cut(s)	44, 200, 399
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	5 cut(s)	13, 234, 397, 471, 482
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	160, 249, 340, 554
LmnI	GCTCC	3 cut(s)	143, 548, 620
LweI	GCATC	2 cut(s)	86, 112
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	4 cut(s)	95, 301, 307, 673
MalI	GATC	4 cut(s)	162, 251, 342, 556
MboI	GATC	4 cut(s)	160, 249, 340, 554
MboII	GAAGA	3 cut(s)	335, 371, 427
MflI	RGATCY	1 cut(s)	554
MlsI	TGGCCA	3 cut(s)	14, 654, 738
MluCI	AATT	4 cut(s)	334, 613, 625, 730
MluNI	TGGCCA	3 cut(s)	14, 654, 738
MmeI	TCCRAC	2 cut(s)	575, 707
Mox20I	TGGCCA	3 cut(s)	14, 654, 738
MroI	TCCGGA	1 cut(s)	128
MscI	TGGCCA	3 cut(s)	14, 654, 738
MseI	TTAA	4 cut(s)	63, 288, 561, 769
Msp20I	TGGCCA	3 cut(s)	14, 654, 738
MspI	CCGG	2 cut(s)	129, 591
MwoI	GCNNNNNNNGC	3 cut(s)	11, 382, 404
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	4 cut(s)	160, 249, 340, 554
NlaIII	CATG	5 cut(s)	13, 234, 397, 471, 482
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	4 cut(s)	95, 301, 307, 673
PfeI	GAWTC	2 cut(s)	69, 272
PkrI	GCNGC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	2 cut(s)	205, 759
RsaNI	GTAC	2 cut(s)	204, 758
SaqAI	TTAA	4 cut(s)	63, 288, 561, 769
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	160, 249, 340, 554
ScaI	AGTACT	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	86, 112
SfcI	CTRYAG	3 cut(s)	171, 244, 427
Sse9I	AATT	4 cut(s)	334, 613, 625, 730
SsiI	CCGC	4 cut(s)	5, 194, 374, 405
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	307, 762
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	390, 584
TasI	AATT	4 cut(s)	334, 613, 625, 730
TatI	WGTACW	2 cut(s)	203, 757
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	69, 272
Tru1I	TTAA	4 cut(s)	63, 288, 561, 769
Tru9I	TTAA	4 cut(s)	63, 288, 561, 769
TseFI	GTSAC	4 cut(s)	95, 301, 307, 673
Tsp45I	GTSAC	4 cut(s)	95, 301, 307, 673
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	2 cut(s)	289, 372
XapI	RAATTY	1 cut(s)	730
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.