Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005232

Physical Location & Seq

Genomic Coordinates Forward (+)

32531950 .. 32535865

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1188200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAAACTATCGGAGAGAACATGGGTAATCTATTCTGTTGTGTTCAAGTTGATCAATCCACGGTAGCTATAAGGGAAAGATTTGGAAAGTTTGTGGATGTTCTTGAGCCAGGATGTCATTGCCTGCCTTGGTTTCTTGGGCATCAGCTTGCTGGTCATCTCTCTCTTCGTTTGCAGCAATTGGACGTGCGTTGTGAGACCAAGACAAAGGACAACGTATTTGTTAACGTCGTTGCATCTATTCAATATCGTGCTCTAGCAAACAAAGCAGATGATGCTTTCTACAAACTCACCAACACGAGGTCTCAAATCCAGGCCTATGTCTTCGACGTGATTAGAGCTAGTGTTCCAAAGCTGAATCTGGATGCTGCTTTTGAGCAGAAGAATGAAATTGCAAAAGCAGTGGAAGATGAGCTCGAAAAAGCTATGTCTGCATACGGTTATGAGATTGTGCAAACGCTCATTGTTGACATAGAACCAGATGTGCATGTGAAACGGGCAATGAATGAAATCAATGCTGCTGCAAGAATGAGAGTGGCAACTAATGAGAAGGCAGAGGCTGAGAAGATTTTGCAAATTAAACGAGCTGAAGGTGAGGCTGAGTCAAAGTATCTCTCTGGGCTGGGTATAGCTCGCCAGCGTCAAGCAATTGTAGATGGTTTGAGAGACAGTGTGCTGGGGTTCTCCGTCAATGTTCCAGGGACGACTGCAAAGGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACCATGAAGGAGATCGGCGCTGCCTCTAAATCCTCCACCGTGTTTATTCCCCATGGACCTGGTGCTGTACGGGATGTAGCTTCTCAGATTCGTGATGGACTTCTTCAGGGTTCTTATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

292

Amino Acids

32.19

Weight (kDa)

6.01

Isoelectric Point (pI)

28.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	16 - 189	2e-27	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01290
fragaria_vesca	FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490
malus_domestica	MD06G1188200.v1.1 MD14G1194700.v1.1
prunus_persica	Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1
pyrus_communis	pycom14g16170
rosa_chinensis	RchiOBHm_Chr7g0180601
rosa_laevigata	RLG00000005251
rosa_multiflora	Rmu_co8451221.1_g000001 Rmu_sc0005690.1_g000020 Rmu_sc0023372.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272750
rosa_rugosa	Rorug06G0434100 Rorug06G0434200 Rorug06G0434300 Rorug06G0434400 Rorug06G0434500
rosa_samantha	Rh7AG035500 Rh7BG035400 Rh7DG035700
rosa_wichuraiana	Rw7G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	609, 842
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	47, 245
AjiI	CACGTC	2 cut(s)	187, 331
AjnI	CCWGG	4 cut(s)	109, 312, 697, 811
AluBI	AGCT	9 cut(s)	68, 148, 341, 355, 415, 425, 587, 632, 833
AluI	AGCT	9 cut(s)	68, 148, 341, 355, 415, 425, 587, 632, 833
Alw21I	GWGCWC	2 cut(s)	256, 417
Alw26I	GTCTC	3 cut(s)	191, 309, 660
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	5 cut(s)	175, 368, 518, 521, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	2 cut(s)	730, 809
AsuHPI	GGTGA	2 cut(s)	283, 605
AvaII	GGWCC	2 cut(s)	730, 809
BanII	GRGCYC	1 cut(s)	417
BauI	CACGAG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	256, 417
BbvI	GCAGC	5 cut(s)	187, 355, 505, 508, 760
BccI	CCATC	2 cut(s)	650, 842
BciT130I	CCWGG	4 cut(s)	111, 314, 699, 813
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	3 cut(s)	191, 309, 660
BfaI	CTAG	2 cut(s)	257, 342
BfoI	RGCGCY	1 cut(s)	774
BisI	GCNGC	5 cut(s)	176, 369, 519, 522, 774
BlsI	GCNGC	5 cut(s)	177, 370, 520, 523, 775
Bme1390I	CCNGG	4 cut(s)	111, 314, 699, 813
Bme18I	GGWCC	2 cut(s)	730, 809
BmgBI	CACGTC	2 cut(s)	187, 331
BmgT120I	GGNCC	2 cut(s)	730, 809
BmrFI	CCNGG	4 cut(s)	111, 314, 699, 813
BmsI	GCATC	4 cut(s)	151, 245, 265, 355
BpiI	GAAGAC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	191, 309
BsaJI	CCNNGG	4 cut(s)	60, 128, 698, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	118, 507
BseBI	CCWGG	4 cut(s)	111, 314, 699, 813
BseDI	CCNNGG	4 cut(s)	60, 128, 698, 805
BseGI	GGATG	5 cut(s)	103, 119, 370, 721, 832
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	2 cut(s)	118, 507
BseMII	CTCAG	4 cut(s)	552, 591, 755, 851
BseXI	GCAGC	5 cut(s)	187, 355, 505, 508, 760
BseYI	CCCAGC	2 cut(s)	622, 676
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	256, 417
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	3 cut(s)	191, 309, 660
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	317
Bso31I	GGTCTC	2 cut(s)	191, 309
Bsp1286I	GDGCHC	2 cut(s)	256, 417
Bsp143I	GATC	2 cut(s)	52, 765
Bsp19I	CCATGG	1 cut(s)	805
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	4 cut(s)	553, 592, 754, 850
BspTNI	GGTCTC	2 cut(s)	191, 309
BsrDI	GCAATG	2 cut(s)	118, 507
BssECI	CCNNGG	4 cut(s)	60, 128, 698, 805
BssMI	GATC	2 cut(s)	52, 765
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	128, 805
Bst2BI	CACGAG	1 cut(s)	298
Bst2UI	CCWGG	4 cut(s)	111, 314, 699, 813
Bst4CI	ACNGT	4 cut(s)	64, 440, 671, 793
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	4 cut(s)	125, 150, 634, 638
BstDEI	CTNAG	4 cut(s)	561, 600, 741, 837
BstDSI	CCRYGG	2 cut(s)	60, 805
BstF5I	GGATG	5 cut(s)	103, 119, 370, 721, 832
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	2 cut(s)	55, 768
BstMAI	GTCTC	3 cut(s)	191, 309, 660
BstMBI	GATC	2 cut(s)	52, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 431
BstNI	CCWGG	4 cut(s)	111, 314, 699, 813
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	4 cut(s)	109, 312, 697, 811
BstV1I	GCAGC	5 cut(s)	187, 355, 505, 508, 760
BstV2I	GAAGAC	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	812
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	2 cut(s)	60, 805
BtrI	CACGTC	2 cut(s)	187, 331
BtsCI	GGATG	5 cut(s)	103, 119, 370, 721, 832
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	408, 676
Cac8I	GCNNGC	4 cut(s)	125, 150, 634, 638
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	2 cut(s)	730, 809
CseI	GACGC	1 cut(s)	629
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	821
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	6 cut(s)	22, 488, 721, 727, 757, 806
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	4 cut(s)	561, 600, 741, 837
DpnI	GATC	2 cut(s)	54, 767
DpnII	GATC	2 cut(s)	52, 765
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	128, 805
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	417
Eco31I	GGTCTC	2 cut(s)	191, 309
Eco47I	GGWCC	2 cut(s)	730, 809
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	609, 842
EcoICRI	GAGCTC	1 cut(s)	415
EcoRII	CCWGG	4 cut(s)	109, 312, 697, 811
EcoT14I	CCWWGG	2 cut(s)	128, 805
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	128, 805
FaeI	CATG	6 cut(s)	25, 491, 724, 730, 760, 809
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	6 cut(s)	21, 487, 720, 726, 756, 805
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	176, 369, 519, 522, 774
FokI	GGATG	5 cut(s)	110, 126, 377, 728, 839
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	5 cut(s)	176, 369, 519, 522, 774
FspBI	CTAG	2 cut(s)	257, 342
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	5 cut(s)	176, 369, 519, 522, 774
GsaI	CCCAGC	2 cut(s)	626, 680
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	6 cut(s)	25, 491, 724, 730, 760, 809
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	2 cut(s)	226, 469
HindII	GTYRAC	2 cut(s)	226, 469
HinfI	GANTC	3 cut(s)	358, 602, 841
HpaI	GTTAAC	1 cut(s)	226
HphI	GGTGA	2 cut(s)	283, 605
Hpy166II	GTNNAC	2 cut(s)	226, 469
Hpy188I	TCNGA	2 cut(s)	14, 840
Hpy188III	TCNNGA	3 cut(s)	104, 362, 845
Hpy8I	GTNNAC	2 cut(s)	226, 469
Hpy99I	CGWCG	2 cut(s)	233, 332
HpyAV	CCTTC	3 cut(s)	544, 584, 754
HpyCH4III	ACNGT	4 cut(s)	64, 440, 671, 793
HpyCH4IV	ACGT	4 cut(s)	186, 216, 228, 330
HpyCH4V	TGCA	9 cut(s)	175, 236, 395, 434, 454, 487, 524, 574, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 431
HpyF3I	CTNAG	4 cut(s)	561, 600, 741, 837
HpySE526I	ACGT	4 cut(s)	186, 216, 228, 330
Hsp92II	CATG	6 cut(s)	25, 491, 724, 730, 760, 809
HspAI	GCGC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	52, 765
Lsp1109I	GCAGC	5 cut(s)	187, 355, 505, 508, 760
LweI	GCATC	4 cut(s)	151, 245, 265, 355
MabI	ACCWGGT	1 cut(s)	811
MaeI	CTAG	2 cut(s)	257, 342
MaeII	ACGT	4 cut(s)	186, 216, 228, 330
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	2 cut(s)	54, 767
MboI	GATC	2 cut(s)	52, 765
MboII	GAAGA	6 cut(s)	158, 316, 394, 419, 577, 848
MfeI	CAATTG	2 cut(s)	179, 648
MhlI	GDGCHC	2 cut(s)	256, 417
MluCI	AATT	4 cut(s)	179, 390, 576, 648
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	5 cut(s)	294, 550, 589, 787, 796
MseI	TTAA	2 cut(s)	225, 579
MslI	CAYNNNNRTG	1 cut(s)	725
MspR9I	CCNGG	4 cut(s)	111, 314, 699, 813
MunI	CAATTG	2 cut(s)	179, 648
MvaI	CCWGG	4 cut(s)	111, 314, 699, 813
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 431
NcoI	CCATGG	1 cut(s)	805
NdeII	GATC	2 cut(s)	52, 765
NlaIII	CATG	6 cut(s)	25, 491, 724, 730, 760, 809
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	358, 841
PflFI	GACNNNGTC	1 cut(s)	728
PkrI	GCNGC	5 cut(s)	177, 370, 520, 523, 775
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	4 cut(s)	109, 312, 697, 811
PspFI	CCCAGC	2 cut(s)	622, 676
PspGI	CCWGG	4 cut(s)	109, 312, 697, 811
PspPI	GGNCC	2 cut(s)	730, 809
PstNI	CAGNNNCTG	1 cut(s)	560
PsyI	GACNNNGTC	1 cut(s)	728
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
RseI	CAYNNNNRTG	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	225, 579
SatI	GCNGC	5 cut(s)	176, 369, 519, 522, 774
Sau3AI	GATC	2 cut(s)	52, 765
Sau96I	GGNCC	2 cut(s)	730, 809
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	4 cut(s)	111, 314, 699, 813
SduI	GDGCHC	2 cut(s)	256, 417
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	4 cut(s)	151, 245, 265, 355
SinI	GGWCC	2 cut(s)	730, 809
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	179, 390, 576, 648
SseBI	AGGCCT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	257, 342
SstI	GAGCTC	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	109, 312, 697, 811
StyI	CCWWGG	2 cut(s)	128, 805
TaaI	ACNGT	4 cut(s)	64, 440, 671, 793
TaiI	ACGT	4 cut(s)	189, 219, 231, 333
TaqI	TCGA	2 cut(s)	327, 417
TasI	AATT	4 cut(s)	179, 390, 576, 648
TfiI	GAWTC	2 cut(s)	358, 841
Tru1I	TTAA	2 cut(s)	225, 579
Tru9I	TTAA	2 cut(s)	225, 579
TscAI	CASTG	2 cut(s)	408, 676
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	5 cut(s)	175, 368, 518, 521, 773
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	5 cut(s)	17, 402, 518, 522, 773
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	2 cut(s)	408, 676
Tth111I	GACNNNGTC	1 cut(s)	728
VpaK11BI	GGWCC	2 cut(s)	730, 809
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	2 cut(s)	257, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.