Rw7G002920

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005232
Physical Location & Seq
Forward (+)
2409318 .. 2410498
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002920.1

Sequence Viewer

Length: 774 bp
ATGGAGCCAGGATGCCATTGCATGCCTTGGTTTCTTGGGCATCAGGTTGCTGGTCATCTTTCTCTGCGTTTGCAGCAATTGGATGTGCGGTGTGAGACCAAGACAAAGGACAATGTCTTTGTCAATGTCGTTGCATCTATTCAATATCGTGCTCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTCAGCAACACTAGGTCTCAAATCCAGGCCTATGTTTTTGATGTGATTAGAGCCAGTGTTCCAAAGCTCCTCCTGGATGATGCTTTTGAGCAAAAGAATGAAATTGCAAAAGCTGTAGAAGATGAGCTTGAGAAGGCCATGTCTGCTTATGGTTATGAGATTGTACAAACTCTCATTGTTGACATAGAACCAGATGAGCATGTGAAACGTGCAATGAATGAAATCAATGCTGCTGCAAGAATGAGGGTGGCAGCTAATGAAAAGGCAGAGGCAGAGAAGATTTTGCAAATCAAACGGGCTGAGGGTGAGGCTGAGTCCAAGTATCTGTCTGGGCTGGGTATAGCTCGTCAACGTCAAGCAATTGTAGATGGTTTGAGAGACAGTGTGCTGGGCTTTGCTGTTAATGTTCCAGGGACCACCGCAAAGGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACAATGAAGGAAATTGGTGCCAGCTCTAAATCCTCTGCTGTTTTTATTCCCCATGGACCTGGTGCCGTCCGTGATGTAGCCTCTCAGATCCGTGATGGACTTCTTCAGGGTTCTCACCAGTAG

Protein Analysis

257

Amino Acids

28.37

Weight (kDa)

5.74

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 2 - 155 2.4e-22 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 668, 713
AciI CCGC 2 cut(s) 88, 606
AclWI GGATC 1 cut(s) 733
AcuI CTGAAG 1 cut(s) 740
AfaI GTAC 1 cut(s) 351
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 5 cut(s) 7, 210, 258, 595, 709
AluBI AGCT 6 cut(s) 253, 299, 313, 440, 530, 675
AluI AGCT 6 cut(s) 253, 299, 313, 440, 530, 675
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 3 cut(s) 89, 207, 558
AlwI GGATC 1 cut(s) 733
AoxI GGCC 2 cut(s) 213, 321
ApeKI GCWGC 4 cut(s) 73, 416, 419, 437
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 3 cut(s) 600, 628, 707
AsuHPI GGTGA 2 cut(s) 503, 758
AvaII GGWCC 3 cut(s) 600, 628, 707
BanI GGYRCC 2 cut(s) 668, 713
Bbv12I GWGCWC 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 486
BbvI GCAGC 4 cut(s) 85, 403, 406, 449
BccI CCATC 2 cut(s) 548, 740
BceAI ACGGC 1 cut(s) 701
BciT130I CCWGG 5 cut(s) 9, 212, 260, 597, 711
BcoDI GTCTC 3 cut(s) 89, 207, 558
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 4 cut(s) 74, 417, 420, 438
BlsI GCNGC 4 cut(s) 75, 418, 421, 439
Bme1390I CCNGG 5 cut(s) 9, 212, 260, 597, 711
Bme18I GGWCC 3 cut(s) 600, 628, 707
BmgT120I GGNCC 3 cut(s) 600, 628, 707
BmiI GGNNCC 4 cut(s) 6, 601, 670, 715
BmrFI CCNGG 5 cut(s) 9, 212, 260, 597, 711
BmsI GCATC 5 cut(s) 2, 49, 143, 163, 256
Bpu10I CCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 335
BsaI GGTCTC 2 cut(s) 89, 207
BsaJI CCNNGG 3 cut(s) 26, 596, 703
Bse1I ACTGG 2 cut(s) 240, 769
Bse3DI GCAATG 2 cut(s) 16, 405
BseBI CCWGG 5 cut(s) 9, 212, 260, 597, 711
BseDI CCNNGG 3 cut(s) 26, 596, 703
BseGI GGATG 4 cut(s) 17, 88, 268, 619
BseMI GCAATG 2 cut(s) 16, 405
BseMII CTCAG 5 cut(s) 202, 477, 489, 653, 749
BseNI ACTGG 2 cut(s) 240, 769
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 85, 403, 406, 449
BseYI CCCAGC 2 cut(s) 520, 574
BshFI GGCC 2 cut(s) 215, 323
BshNI GGYRCC 2 cut(s) 668, 713
BsiHKAI GWGCWC 1 cut(s) 154
BslFI GGGAC 1 cut(s) 613
BsmAI GTCTC 3 cut(s) 89, 207, 558
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 2 cut(s) 215, 323
Bso31I GGTCTC 2 cut(s) 89, 207
Bsp1286I GDGCHC 1 cut(s) 154
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 738
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 2 cut(s) 88, 606
BspANI GGCC 2 cut(s) 215, 323
BspCNI CTCAG 5 cut(s) 201, 478, 490, 652, 748
BspLI GGNNCC 4 cut(s) 6, 601, 670, 715
BspPI GGATC 1 cut(s) 733
BspT107I GGYRCC 2 cut(s) 668, 713
BspTNI GGTCTC 2 cut(s) 89, 207
BsrDI GCAATG 2 cut(s) 16, 405
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 2 cut(s) 240, 769
BssECI CCNNGG 3 cut(s) 26, 596, 703
BssMI GATC 1 cut(s) 738
BssT1I CCWWGG 2 cut(s) 26, 703
Bst2UI CCWGG 5 cut(s) 9, 212, 260, 597, 711
Bst4CI ACNGT 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 23, 673
BstDEI CTNAG 5 cut(s) 188, 486, 498, 639, 735
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 4 cut(s) 17, 88, 268, 619
BstKTI GATC 1 cut(s) 741
BstMAI GTCTC 3 cut(s) 89, 207, 558
BstMBI GATC 1 cut(s) 738
BstMWI GCNNNNNNNGC 4 cut(s) 73, 164, 173, 329
BstNI CCWGG 5 cut(s) 9, 212, 260, 597, 711
BstNSI RCATGY 2 cut(s) 25, 389
BstSCI CCNGG 5 cut(s) 7, 210, 258, 595, 709
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 4 cut(s) 85, 403, 406, 449
BstX2I RGATCY 1 cut(s) 738
BstXI CCANNNNNNTGG 1 cut(s) 710
BstYI RGATCY 1 cut(s) 738
BsuRI GGCC 2 cut(s) 215, 323
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 4 cut(s) 17, 88, 268, 619
BtsIMutI CAGTG 2 cut(s) 247, 574
Cac8I GCNNGC 2 cut(s) 23, 673
Cfr13I GGNCC 3 cut(s) 600, 628, 707
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 1 cut(s) 350
CviAII CATG 6 cut(s) 22, 325, 386, 619, 625, 704
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 5 cut(s) 188, 486, 498, 639, 735
DpnI GATC 1 cut(s) 740
DpnII GATC 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 26, 703
Eco147I AGGCCT 1 cut(s) 215
Eco31I GGTCTC 2 cut(s) 89, 207
Eco47I GGWCC 3 cut(s) 600, 628, 707
Eco57I CTGAAG 1 cut(s) 740
EcoRII CCWGG 5 cut(s) 7, 210, 258, 595, 709
EcoT14I CCWWGG 2 cut(s) 26, 703
ErhI CCWWGG 2 cut(s) 26, 703
FaeI CATG 6 cut(s) 25, 328, 389, 622, 628, 707
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 1 cut(s) 613
FatI CATG 6 cut(s) 21, 324, 385, 618, 624, 703
Fnu4HI GCNGC 4 cut(s) 74, 417, 420, 438
FokI GGATG 4 cut(s) 24, 95, 275, 626
Fsp4HI GCNGC 4 cut(s) 74, 417, 420, 438
FspBI CTAG 1 cut(s) 198
GluI GCNGC 4 cut(s) 74, 417, 420, 438
GsaI CCCAGC 2 cut(s) 524, 578
HaeIII GGCC 2 cut(s) 215, 323
Hin1II CATG 6 cut(s) 25, 328, 389, 622, 628, 707
HincII GTYRAC 2 cut(s) 367, 536
HindII GTYRAC 2 cut(s) 367, 536
HinfI GANTC 1 cut(s) 500
HphI GGTGA 2 cut(s) 503, 758
Hpy166II GTNNAC 2 cut(s) 367, 536
Hpy188I TCNGA 1 cut(s) 738
Hpy8I GTNNAC 2 cut(s) 367, 536
HpyAV CCTTC 2 cut(s) 313, 652
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 2 cut(s) 394, 538
HpyCH4V TGCA 7 cut(s) 21, 73, 134, 293, 398, 422, 472
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 164, 173, 329
HpyF3I CTNAG 5 cut(s) 188, 486, 498, 639, 735
HpySE526I ACGT 2 cut(s) 394, 538
Hsp92II CATG 6 cut(s) 25, 328, 389, 622, 628, 707
Kzo9I GATC 1 cut(s) 738
LmnI GCTCC 2 cut(s) 4, 258
Lsp1109I GCAGC 4 cut(s) 85, 403, 406, 449
LweI GCATC 5 cut(s) 2, 49, 143, 163, 256
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 394, 538
MaeIII GTNAC 1 cut(s) 634
MalI GATC 1 cut(s) 740
MboI GATC 1 cut(s) 738
MboII GAAGA 3 cut(s) 317, 475, 746
MfeI CAATTG 2 cut(s) 77, 546
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 77, 288, 546, 663
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 7 cut(s) 266, 423, 448, 481, 487, 694, 742
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 623
MspR9I CCNGG 5 cut(s) 9, 212, 260, 597, 711
MunI CAATTG 2 cut(s) 77, 546
MvaI CCWGG 5 cut(s) 9, 212, 260, 597, 711
MwoI GCNNNNNNNGC 4 cut(s) 73, 164, 173, 329
NcoI CCATGG 1 cut(s) 703
NdeII GATC 1 cut(s) 738
NlaIII CATG 6 cut(s) 25, 328, 389, 622, 628, 707
NlaIV GGNNCC 4 cut(s) 6, 601, 670, 715
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 2 cut(s) 25, 389
PaeI GCATGC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 215
PflFI GACNNNGTC 2 cut(s) 113, 626
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 4 cut(s) 75, 418, 421, 439
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 5 cut(s) 7, 210, 258, 595, 709
PspFI CCCAGC 2 cut(s) 520, 574
PspGI CCWGG 5 cut(s) 7, 210, 258, 595, 709
PspN4I GGNNCC 4 cut(s) 6, 601, 670, 715
PspPI GGNCC 3 cut(s) 600, 628, 707
PsuI RGATCY 1 cut(s) 738
PsyI GACNNNGTC 2 cut(s) 113, 626
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 4 cut(s) 74, 417, 420, 438
Sau3AI GATC 1 cut(s) 738
Sau96I GGNCC 3 cut(s) 600, 628, 707
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 5 cut(s) 9, 212, 260, 597, 711
SduI GDGCHC 1 cut(s) 154
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 5 cut(s) 2, 49, 143, 163, 256
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 3 cut(s) 600, 628, 707
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 25
Sse9I AATT 4 cut(s) 77, 288, 546, 663
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 2 cut(s) 88, 606
SspMI CTAG 1 cut(s) 198
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 5 cut(s) 7, 210, 258, 595, 709
StyI CCWWGG 2 cut(s) 26, 703
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 2 cut(s) 397, 541
TasI AATT 4 cut(s) 77, 288, 546, 663
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 247, 574
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 4 cut(s) 73, 416, 419, 437
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 5 cut(s) 300, 416, 420, 459, 671
TspGWI ACGGA 2 cut(s) 710, 731
TspRI CASTG 2 cut(s) 247, 574
Tth111I GACNNNGTC 2 cut(s) 113, 626
VpaK11BI GGWCC 3 cut(s) 600, 628, 707
XceI RCATGY 2 cut(s) 25, 389
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.